Wall clock time and date at job start Tue Mar 31 2020 15:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.12783 * 2 1 4 4 C 1.50623 * 109.31230 * 119.46056 * 2 1 3 5 5 C 1.38735 * 118.42198 * 317.69907 * 4 2 1 6 6 C 1.38011 * 120.37626 * 180.37898 * 5 4 2 7 7 C 1.38268 * 119.86753 * 359.96038 * 6 5 4 8 8 C 1.38025 * 119.83159 * 359.92767 * 7 6 5 9 9 C 1.37831 * 121.84905 * 137.87969 * 4 2 1 10 10 C 1.50718 * 121.66048 * 359.54527 * 9 4 2 11 11 C 1.52896 * 109.95934 * 16.89207 * 10 9 4 12 12 N 1.46631 * 109.30538 * 240.51122 * 2 1 3 13 13 C 1.38580 * 110.99975 * 310.55048 * 12 2 1 14 14 N 1.31217 * 126.47451 * 310.85035 * 13 12 2 15 15 N 1.28522 * 109.86136 * 180.02562 * 14 13 12 16 16 C 1.30287 * 110.05618 * 0.02562 * 15 14 13 17 17 C 1.50700 * 126.35105 * 179.97438 * 16 15 14 18 18 C 1.53003 * 109.47405 * 90.01965 * 17 16 15 19 19 C 1.50699 * 109.47028 * 180.02562 * 18 17 16 20 20 H 1.07991 * 120.00320 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99570 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00033 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47667 * 179.97438 * 23 21 19 25 25 H 1.48505 * 109.46958 * 59.99981 * 23 21 19 26 26 H 1.48499 * 109.47324 * 300.00730 * 23 21 19 27 27 N 1.36456 * 126.47486 * 131.14648 * 13 12 2 28 28 C 1.46503 * 127.13557 * 359.97438 * 27 13 12 29 29 H 1.09000 * 109.47162 * 179.48287 * 1 2 3 30 30 H 1.09000 * 109.47415 * 299.48675 * 1 2 3 31 31 H 1.09004 * 109.46812 * 59.49128 * 1 2 3 32 32 H 1.08000 * 119.81459 * 0.34072 * 5 4 2 33 33 H 1.07998 * 120.07001 * 179.97438 * 6 5 4 34 34 H 1.08002 * 120.08190 * 179.97438 * 7 6 5 35 35 H 1.08003 * 119.83235 * 180.02562 * 8 7 6 36 36 H 1.08994 * 109.38637 * 256.74528 * 10 9 4 37 37 H 1.09001 * 109.31131 * 136.99509 * 10 9 4 38 38 H 1.09000 * 109.63065 * 189.91102 * 11 10 9 39 39 H 1.09002 * 109.79413 * 69.42140 * 11 10 9 40 40 H 1.09001 * 109.46679 * 330.02293 * 17 16 15 41 41 H 1.08997 * 109.47075 * 210.02246 * 17 16 15 42 42 H 1.09002 * 109.47071 * 59.99950 * 18 17 16 43 43 H 1.09004 * 109.46716 * 300.00556 * 18 17 16 44 44 H 0.96998 * 120.00347 * 359.97438 * 22 21 19 45 45 H 1.08995 * 109.47450 * 265.00272 * 28 27 13 46 46 H 1.08999 * 109.47067 * 25.00365 * 28 27 13 47 47 H 1.09006 * 109.46805 * 145.00220 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8871 1.0299 0.0000 4 6 2.0281 -0.6991 1.2377 5 6 1.3948 -0.4374 2.4440 6 6 1.8231 -1.0497 3.6043 7 6 2.8888 -1.9299 3.5655 8 6 3.5185 -2.1932 2.3658 9 6 3.0882 -1.5792 1.1990 10 6 3.8037 -1.8998 -0.0882 11 6 3.4760 -0.8440 -1.1444 12 7 2.0147 -0.6812 -1.2046 13 6 1.3851 -1.9045 -1.3707 14 7 1.2383 -2.8364 -0.4587 15 7 0.6069 -3.8391 -0.9567 16 6 0.3163 -3.6085 -2.2056 17 6 -0.4183 -4.5371 -3.1379 18 6 -1.9209 -4.2611 -3.0531 19 6 -2.6555 -5.1901 -3.9849 20 1 -2.1058 -5.9055 -4.5785 21 6 -4.0296 -5.1268 -4.0796 22 7 -4.6991 -4.2553 -3.3571 23 14 -4.9403 -6.2778 -5.2351 24 1 -6.3987 -6.0110 -5.1519 25 1 -4.6721 -7.6853 -4.8447 26 1 -4.4740 -6.0529 -6.6270 27 7 0.8056 -2.3698 -2.5151 28 6 0.7228 -1.6834 -3.8068 29 1 -0.3633 -1.0276 -0.0093 30 1 -0.3634 0.5058 0.8945 31 1 -0.3633 0.5217 -0.8854 32 1 0.5623 0.2499 2.4754 33 1 1.3268 -0.8421 4.5407 34 1 3.2271 -2.4107 4.4715 35 1 4.3506 -2.8810 2.3354 36 1 3.4853 -2.8793 -0.4447 37 1 4.8789 -1.9116 0.0904 38 1 3.8485 -1.1697 -2.1156 39 1 3.9394 0.1049 -0.8740 40 1 -0.2219 -5.5701 -2.8509 41 1 -0.0757 -4.3722 -4.1594 42 1 -2.1174 -3.2281 -3.3400 43 1 -2.2635 -4.4259 -2.0315 44 1 -4.2262 -3.6574 -2.7573 45 1 -0.2322 -1.1634 -3.8813 46 1 1.5364 -0.9626 -3.8881 47 1 0.8026 -2.4138 -4.6121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121495341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:50 Heat of formation + Delta-G solvation = 92.963955 kcal Electronic energy + Delta-G solvation = -28482.135651 eV Core-core repulsion = 24858.343901 eV Total energy + Delta-G solvation = -3623.791749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.16031 -41.43537 -38.42113 -36.57421 -35.78905 -34.79011 -33.75680 -32.33267 -30.76431 -30.10552 -28.68817 -28.26643 -26.83794 -25.18287 -24.43191 -23.97753 -22.70985 -22.26365 -21.61400 -20.51032 -19.00568 -18.07012 -17.80616 -17.46222 -17.08065 -16.45856 -16.01390 -15.77204 -15.63800 -15.55873 -15.15135 -15.01804 -14.99013 -14.43563 -14.19414 -14.12563 -13.82704 -13.62089 -13.47834 -13.40235 -13.04953 -12.84777 -12.73042 -12.65867 -12.52881 -12.39105 -12.33175 -12.16719 -12.05958 -11.89996 -11.60852 -11.43584 -11.06952 -10.81314 -10.56401 -10.11616 -9.77114 -9.64129 -9.39094 -8.70779 -6.42727 0.47629 0.53003 0.70877 1.26331 1.54994 1.63669 1.77590 1.82413 2.57385 2.64515 2.85631 3.15271 3.41107 3.63770 3.66772 3.74226 3.80467 3.89874 4.00820 4.06994 4.21327 4.24676 4.25649 4.29771 4.38727 4.47746 4.49557 4.56313 4.58656 4.60112 4.65254 4.70420 4.73096 4.79802 4.87815 4.93693 5.04815 5.06788 5.14361 5.20293 5.22845 5.35019 5.45210 5.52948 5.63756 5.65321 5.76116 5.91379 6.14473 6.16016 6.21385 6.50700 7.40867 7.72786 8.69222 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019002 B = 0.003145 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.173745 B = 8900.977397 C = 9256.264002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.136 3.864 3 H 0.138 0.862 4 C -0.110 4.110 5 C -0.122 4.122 6 C -0.137 4.137 7 C -0.127 4.127 8 C -0.134 4.134 9 C -0.057 4.057 10 C -0.112 4.112 11 C 0.060 3.940 12 N -0.445 5.445 13 C 0.342 3.658 14 N -0.317 5.317 15 N -0.338 5.338 16 C 0.190 3.810 17 C -0.006 4.006 18 C 0.030 3.970 19 C -0.616 4.616 20 H 0.064 0.936 21 C -0.038 4.038 22 N -0.937 5.937 23 Si 1.120 2.880 24 H -0.287 1.287 25 H -0.270 1.270 26 H -0.261 1.261 27 N -0.466 5.466 28 C 0.075 3.925 29 H 0.017 0.983 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.053 0.947 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.096 0.904 42 H -0.010 1.010 43 H -0.025 1.025 44 H 0.251 0.749 45 H 0.075 0.925 46 H 0.121 0.879 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.219 12.686 5.096 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.156 0.844 4 C -0.112 4.112 5 C -0.141 4.141 6 C -0.155 4.155 7 C -0.144 4.144 8 C -0.152 4.152 9 C -0.057 4.057 10 C -0.150 4.150 11 C -0.067 4.067 12 N -0.169 5.169 13 C -0.014 4.014 14 N -0.160 5.160 15 N -0.179 5.179 16 C -0.078 4.078 17 C -0.046 4.046 18 C -0.008 4.008 19 C -0.653 4.653 20 H 0.082 0.918 21 C -0.235 4.235 22 N -0.574 5.574 23 Si 0.940 3.060 24 H -0.213 1.213 25 H -0.195 1.195 26 H -0.186 1.186 27 N -0.158 5.158 28 C -0.066 4.066 29 H 0.036 0.964 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.142 0.858 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.009 0.991 43 H -0.006 1.006 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.140 0.860 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.728 11.901 5.401 22.838 hybrid contribution 1.095 0.363 0.463 1.243 sum 19.824 12.264 5.864 24.037 Atomic orbital electron populations 1.21961 0.94142 1.00611 1.03480 1.20695 0.95083 0.98088 0.83239 0.84448 1.20137 0.96191 0.98972 0.95879 1.21272 0.99699 1.00807 0.92291 1.21306 0.97576 0.97842 0.98784 1.21323 0.96457 0.98366 0.98305 1.21226 1.01223 1.00144 0.92614 1.19456 0.95533 0.95656 0.95095 1.21119 1.01167 0.99499 0.93224 1.22492 0.83534 1.01032 0.99610 1.59644 1.06643 1.11775 1.38874 1.22456 1.00658 0.94177 0.84114 1.74696 1.17112 0.98658 1.25569 1.73983 1.15800 1.21338 1.06756 1.25215 1.00469 0.87125 0.95028 1.19942 0.93440 0.95661 0.95575 1.18968 0.91483 0.95516 0.94858 1.22402 0.94779 1.21595 1.26540 0.91780 1.27510 0.96833 0.99473 0.99716 1.70926 1.39437 1.21287 1.25773 0.82916 0.74622 0.73969 0.74485 1.21298 1.19484 1.18579 1.46354 1.41950 1.14688 1.12828 1.22291 1.05146 0.98789 0.80394 0.96359 0.89347 0.91374 0.85054 0.84519 0.84522 0.85590 0.92841 0.87984 0.88646 0.85833 0.89760 0.88583 0.99142 1.00629 0.93956 0.90630 0.86047 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.40 71.98 0.60 -3.14 16 2 C 0.14 3.04 2.82 44.20 0.12 3.16 16 3 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.11 -2.76 4.52 -19.87 -0.09 -2.85 16 5 C -0.12 -2.92 9.08 22.33 0.20 -2.72 16 6 C -0.14 -3.10 10.05 22.22 0.22 -2.88 16 7 C -0.13 -2.87 10.05 22.23 0.22 -2.65 16 8 C -0.13 -3.26 9.66 22.33 0.22 -3.05 16 9 C -0.06 -1.45 4.65 -19.85 -0.09 -1.54 16 10 C -0.11 -2.47 5.14 29.82 0.15 -2.32 16 11 C 0.06 1.06 6.02 86.22 0.52 1.58 16 12 N -0.45 -10.38 4.91 -686.58 -3.37 -13.75 16 13 C 0.34 10.88 4.27 260.11 1.11 12.00 16 14 N -0.32 -12.33 7.69 -58.00 -0.45 -12.78 16 15 N -0.34 -15.08 12.18 -49.54 -0.60 -15.68 16 16 C 0.19 7.68 7.32 137.64 1.01 8.68 16 17 C -0.01 -0.27 5.53 29.85 0.17 -0.10 16 18 C 0.03 1.58 4.27 29.85 0.13 1.71 16 19 C -0.62 -34.48 9.11 25.60 0.23 -34.25 16 20 H 0.06 3.38 7.74 -2.92 -0.02 3.35 16 21 C -0.04 -2.20 5.46 84.65 0.46 -1.73 16 22 N -0.94 -58.91 13.65 21.45 0.29 -58.61 16 23 Si 1.12 49.42 29.90 68.60 2.05 51.47 16 24 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 27 N -0.47 -15.24 3.21 -538.18 -1.73 -16.96 16 28 C 0.08 1.76 11.01 127.77 1.41 3.17 16 29 H 0.02 0.63 6.53 -2.39 -0.02 0.61 16 30 H 0.09 1.89 6.43 -2.39 -0.02 1.88 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.13 2.66 6.40 -2.91 -0.02 2.64 16 33 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.05 1.58 6.52 -2.39 -0.02 1.56 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 39 H 0.12 1.48 8.05 -2.39 -0.02 1.46 16 40 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 41 H 0.10 3.46 7.38 -2.39 -0.02 3.44 16 42 H -0.01 -0.53 8.01 -2.39 -0.02 -0.55 16 43 H -0.02 -1.49 8.01 -2.38 -0.02 -1.51 16 44 H 0.25 16.25 7.22 -92.71 -0.67 15.58 16 45 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.12 2.04 8.11 -2.39 -0.02 2.02 16 47 H 0.10 2.09 7.41 -2.38 -0.02 2.07 16 Total: -1.00 -76.99 371.04 3.86 -73.13 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 1.06 Total: 20.12 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 6.60 Total: -26.94 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -5.86 Total: -117.79 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.05 Total: 51.47 kcal Total: -76.99 3.86 -73.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121495341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.094 kcal (2) G-P(sol) polarization free energy of solvation -76.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds