Wall clock time and date at job start Tue Mar 31 2020 15:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46905 * 109.46957 * 291.70558 * 3 2 1 5 5 C 1.46898 * 111.00321 * 286.22536 * 4 3 2 6 6 C 1.47205 * 109.47102 * 66.04461 * 5 4 3 7 7 C 3.00896 * 74.37988 * 252.82408 * 2 1 3 8 8 C 3.89707 * 54.75579 * 250.45548 * 2 1 3 9 9 C 1.38576 * 110.99876 * 162.26649 * 4 3 2 10 10 N 1.31223 * 126.47079 * 68.08222 * 9 4 3 11 11 N 1.28523 * 109.85828 * 180.02562 * 10 9 4 12 12 C 1.30288 * 110.05636 * 359.72176 * 11 10 9 13 13 C 1.50708 * 126.35194 * 180.31423 * 12 11 10 14 14 H 1.08999 * 109.47382 * 180.14936 * 13 12 11 15 15 C 1.53002 * 109.46845 * 300.15176 * 13 12 11 16 16 C 1.53000 * 109.47016 * 60.14815 * 13 12 11 17 17 C 1.50700 * 109.46979 * 175.00516 * 16 13 12 18 18 H 1.07994 * 119.99989 * 359.97438 * 17 16 13 19 19 C 1.37883 * 119.99704 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00043 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99523 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47234 * 89.99966 * 21 19 17 23 23 H 1.48502 * 109.46769 * 209.99741 * 21 19 17 24 24 H 1.48495 * 109.47153 * 329.99279 * 21 19 17 25 25 N 1.36456 * 126.47811 * 248.12535 * 9 4 3 26 26 C 1.46500 * 127.13055 * 359.96483 * 25 9 4 27 27 C 1.50701 * 109.47069 * 94.29686 * 26 25 9 28 28 C 1.30997 * 119.99984 * 125.25002 * 27 26 25 29 29 H 4.40889 * 5.52195 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.46511 * 171.71521 * 3 2 1 31 31 H 1.08992 * 109.47439 * 51.70895 * 3 2 1 32 32 H 1.08998 * 109.46937 * 186.04444 * 5 4 3 33 33 H 1.09000 * 109.47191 * 306.04685 * 5 4 3 34 34 H 1.09005 * 109.47219 * 263.32120 * 8 7 6 35 35 H 1.08997 * 109.47820 * 23.32539 * 8 7 6 36 36 H 1.09004 * 109.47225 * 143.33234 * 8 7 6 37 37 H 1.09004 * 109.47003 * 59.99427 * 15 13 12 38 38 H 1.08994 * 109.47095 * 179.97438 * 15 13 12 39 39 H 1.08998 * 109.47026 * 299.99722 * 15 13 12 40 40 H 1.09002 * 109.47181 * 295.00218 * 16 13 12 41 41 H 1.09003 * 109.47259 * 55.00142 * 16 13 12 42 42 H 0.96997 * 119.99937 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.47229 * 334.29225 * 26 25 9 44 44 H 1.09005 * 109.46779 * 214.29048 * 26 25 9 45 45 H 1.07993 * 120.00037 * 305.24553 * 27 26 25 46 46 H 1.07998 * 120.00429 * 359.97438 * 28 27 26 47 47 H 1.08001 * 120.00220 * 179.72631 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1359 -0.5114 1.2868 5 6 2.9497 0.4811 2.3537 6 6 1.5108 0.6893 2.5845 7 6 0.3638 0.8557 2.7686 8 6 -1.0749 1.0648 2.9994 9 6 4.4634 -0.8981 1.1945 10 7 5.4955 -0.1078 1.0154 11 7 6.5760 -0.8026 0.9770 12 6 6.3004 -2.0663 1.1340 13 6 7.2922 -3.2008 1.1563 14 1 6.7635 -4.1428 1.3016 15 6 8.0508 -3.2412 -0.1718 16 6 8.2828 -2.9898 2.3032 17 6 9.1977 -4.1831 2.4027 18 1 9.0838 -5.0095 1.7169 19 6 10.1796 -4.2202 3.3700 20 7 10.3180 -3.2140 4.2054 21 14 11.3132 -5.6998 3.4937 22 1 12.5089 -5.4799 2.6411 23 1 11.7381 -5.8811 4.9051 24 1 10.5936 -6.9145 3.0336 25 7 4.9442 -2.1728 1.2718 26 6 4.1688 -3.4001 1.4684 27 6 3.8542 -4.0155 0.1292 28 6 4.1836 -5.2599 -0.1134 29 1 -1.0499 0.0001 0.0002 30 1 3.0088 1.0178 -0.1481 31 1 3.0097 -0.6359 -0.8065 32 1 3.4163 0.1209 3.2705 33 1 3.4102 1.4236 2.0576 34 1 -1.2888 0.9751 4.0644 35 1 -1.3576 2.0593 2.6545 36 1 -1.6437 0.3144 2.4502 37 1 8.5794 -2.2991 -0.3171 38 1 8.7684 -4.0614 -0.1555 39 1 7.3451 -3.3915 -0.9888 40 1 8.8737 -2.0938 2.1127 41 1 7.7359 -2.8722 3.2387 42 1 11.0089 -3.2400 4.8857 43 1 3.2397 -3.1637 1.9869 44 1 4.7486 -4.1046 2.0647 45 1 3.3572 -3.4305 -0.6305 46 1 4.6809 -5.8448 0.6461 47 1 3.9542 -5.7023 -1.0716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121501753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:06 Heat of formation + Delta-G solvation = 212.087471 kcal Electronic energy + Delta-G solvation = -27276.844017 eV Core-core repulsion = 23658.217851 eV Total energy + Delta-G solvation = -3618.626166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.72084 -38.37936 -36.15832 -35.17236 -34.10514 -33.14902 -32.63004 -32.16767 -29.97451 -28.70327 -27.20070 -26.90222 -26.70803 -24.87755 -24.09405 -22.01412 -21.12681 -19.97928 -19.18428 -18.49350 -17.48583 -16.87685 -16.60455 -16.16770 -15.88604 -15.15514 -15.10116 -14.61850 -14.43119 -14.08933 -13.91846 -13.80474 -13.61974 -13.50479 -13.37785 -13.10601 -12.72796 -12.44532 -12.34003 -11.78388 -11.63972 -11.34751 -11.13767 -11.00669 -10.92152 -10.88320 -10.64665 -10.48390 -10.35867 -10.03231 -9.97922 -9.89791 -9.67725 -9.60636 -9.53638 -9.13452 -8.95635 -8.49541 -8.37286 -6.01627 -4.05325 1.76429 1.94032 2.10868 2.57660 2.74310 2.87787 2.91253 3.24244 3.30707 3.37491 3.38941 3.79701 4.13756 4.24256 4.42601 4.66214 4.73068 4.83385 4.97999 5.07026 5.08559 5.21827 5.27579 5.33882 5.35578 5.37306 5.40703 5.44895 5.50758 5.64356 5.67971 5.70101 5.78760 6.02359 6.06973 6.20743 6.22835 6.37212 6.38417 6.50624 6.68117 6.76652 6.87772 7.02573 7.34421 7.48868 7.55927 7.60473 7.76724 7.97270 8.33280 9.00104 9.09665 9.58329 11.09443 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017405 B = 0.002891 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.306260 B = 9684.203507 C =10200.148194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.171 4.171 3 C 0.177 3.823 4 N -0.454 5.454 5 C 0.183 3.817 6 C -0.177 4.177 7 C -0.170 4.170 8 C -0.037 4.037 9 C 0.311 3.689 10 N -0.305 5.305 11 N -0.285 5.285 12 C 0.228 3.772 13 C -0.002 4.002 14 H 0.073 0.927 15 C -0.125 4.125 16 C 0.038 3.962 17 C -0.520 4.520 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 N -0.461 5.461 26 C 0.139 3.861 27 C -0.177 4.177 28 C -0.159 4.159 29 H 0.214 0.786 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.014 0.986 42 H 0.261 0.739 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.105 0.895 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.361 2.839 -7.081 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.051 3.949 4 N -0.178 5.178 5 C 0.057 3.943 6 C -0.178 4.178 7 C -0.172 4.172 8 C -0.093 4.093 9 C -0.045 4.045 10 N -0.149 5.149 11 N -0.124 5.124 12 C -0.038 4.038 13 C -0.023 4.023 14 H 0.091 0.909 15 C -0.183 4.183 16 C 0.000 4.000 17 C -0.559 4.559 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.199 1.199 25 N -0.153 5.153 26 C 0.016 3.984 27 C -0.196 4.196 28 C -0.197 4.197 29 H 0.231 0.769 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.032 0.968 42 H 0.071 0.929 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.129 0.871 46 H 0.124 0.876 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.712 3.757 -6.999 23.120 hybrid contribution -0.030 -1.313 0.255 1.338 sum -21.742 2.444 -6.744 22.895 Atomic orbital electron populations 1.24655 0.95594 1.01184 0.99516 1.22472 0.93715 1.00133 1.00807 1.18962 0.85379 1.00697 0.89877 1.58257 1.11392 1.41929 1.06230 1.18931 0.86811 0.94261 0.94285 1.21677 0.93476 1.01115 1.01488 1.22170 0.93640 1.00946 1.00431 1.18838 0.85616 1.02425 1.02430 1.21838 0.90943 0.83132 1.08538 1.74564 0.95047 1.26566 1.18746 1.74089 1.18358 1.00483 1.19464 1.25720 0.81266 0.97393 0.99450 1.20025 0.92484 0.89729 1.00069 0.90910 1.21662 0.99422 1.03486 0.93733 1.19121 0.92307 0.98276 0.90321 1.21122 1.15540 1.03433 1.15766 0.92324 1.25000 0.97477 0.96081 0.95680 1.69976 1.33409 1.30733 1.18745 0.86612 0.81219 0.83020 0.77252 1.20574 1.21294 1.19893 1.46401 1.07727 1.07103 1.54031 1.20933 0.96921 0.84069 0.96443 1.22992 1.01882 0.97185 0.97506 1.23990 0.97861 0.96281 1.01535 0.76871 0.90411 0.88513 0.88062 0.90233 0.90360 0.90413 0.90244 0.92057 0.90633 0.94930 0.94911 0.96804 0.92903 0.87588 0.87984 0.87141 0.87640 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.82 17.24 29.55 0.51 -1.31 16 2 C -0.17 -1.93 11.13 -37.12 -0.41 -2.34 16 3 C 0.18 2.11 5.41 -6.61 -0.04 2.08 16 4 N -0.45 -6.08 4.51 -181.18 -0.82 -6.89 16 5 C 0.18 2.35 5.30 -6.61 -0.04 2.31 16 6 C -0.18 -2.18 11.16 -37.13 -0.41 -2.59 16 7 C -0.17 -1.83 12.01 -37.13 -0.45 -2.28 16 8 C -0.04 -0.24 10.28 34.37 0.35 0.11 16 9 C 0.31 5.04 6.33 -318.87 -2.02 3.02 16 10 N -0.30 -5.83 12.12 30.32 0.37 -5.47 16 11 N -0.28 -6.07 12.18 32.99 0.40 -5.67 16 12 C 0.23 4.44 6.58 -154.02 -1.01 3.43 16 13 C 0.00 -0.04 2.71 -91.77 -0.25 -0.29 16 14 H 0.07 1.34 7.04 -51.93 -0.37 0.98 16 15 C -0.12 -2.32 8.99 37.16 0.33 -1.99 16 16 C 0.04 0.95 4.43 -27.88 -0.12 0.83 16 17 C -0.52 -13.90 8.41 -34.44 -0.29 -14.19 16 18 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 21 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 N -0.46 -7.50 2.79 -115.37 -0.32 -7.82 16 26 C 0.14 1.78 6.25 -5.19 -0.03 1.74 16 27 C -0.18 -1.98 9.85 -36.02 -0.35 -2.34 16 28 C -0.16 -1.58 14.32 29.02 0.42 -1.17 16 29 H 0.21 1.27 7.80 -54.09 -0.42 0.85 16 30 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16 31 H 0.10 1.14 7.94 -51.93 -0.41 0.72 16 32 H 0.10 1.34 8.05 -51.93 -0.42 0.92 16 33 H 0.08 1.01 7.97 -51.93 -0.41 0.59 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.07 1.42 6.95 -51.93 -0.36 1.05 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.11 1.24 8.13 -51.93 -0.42 0.82 16 44 H 0.10 1.29 7.06 -51.93 -0.37 0.92 16 45 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.11 1.03 7.84 -52.49 -0.41 0.61 16 47 H 0.10 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 406.76 15.07 6.13 6.13 Total: -1.00 -32.78 406.76 -9.75 -42.53 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.31 Total: 0.30 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.91 Total: -13.40 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.37 Total: -51.56 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.78 -9.75 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121501753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.621 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 221.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 212.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds