Wall clock time and date at job start Tue Mar 31 2020 15:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46905 * 109.46957 * 291.70558 * 3 2 1 5 5 C 1.46898 * 111.00321 * 286.22536 * 4 3 2 6 6 C 1.47205 * 109.47102 * 66.04461 * 5 4 3 7 7 C 3.00896 * 74.37988 * 252.82408 * 2 1 3 8 8 C 3.89707 * 54.75579 * 250.45548 * 2 1 3 9 9 C 1.38576 * 110.99876 * 162.26649 * 4 3 2 10 10 N 1.31223 * 126.47079 * 68.08222 * 9 4 3 11 11 N 1.28523 * 109.85828 * 180.02562 * 10 9 4 12 12 C 1.30288 * 110.05636 * 359.72176 * 11 10 9 13 13 C 1.50708 * 126.35194 * 180.31423 * 12 11 10 14 14 H 1.08999 * 109.47382 * 180.14936 * 13 12 11 15 15 C 1.53002 * 109.46845 * 300.15176 * 13 12 11 16 16 C 1.53000 * 109.47016 * 60.14815 * 13 12 11 17 17 C 1.50700 * 109.46979 * 175.00516 * 16 13 12 18 18 H 1.07994 * 119.99989 * 359.97438 * 17 16 13 19 19 C 1.37883 * 119.99704 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00043 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99523 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47234 * 89.99966 * 21 19 17 23 23 H 1.48502 * 109.46769 * 209.99741 * 21 19 17 24 24 H 1.48495 * 109.47153 * 329.99279 * 21 19 17 25 25 N 1.36456 * 126.47811 * 248.12535 * 9 4 3 26 26 C 1.46500 * 127.13055 * 359.96483 * 25 9 4 27 27 C 1.50701 * 109.47069 * 94.29686 * 26 25 9 28 28 C 1.30997 * 119.99984 * 125.25002 * 27 26 25 29 29 H 4.40889 * 5.52195 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.46511 * 171.71521 * 3 2 1 31 31 H 1.08992 * 109.47439 * 51.70895 * 3 2 1 32 32 H 1.08998 * 109.46937 * 186.04444 * 5 4 3 33 33 H 1.09000 * 109.47191 * 306.04685 * 5 4 3 34 34 H 1.09005 * 109.47219 * 263.32120 * 8 7 6 35 35 H 1.08997 * 109.47820 * 23.32539 * 8 7 6 36 36 H 1.09004 * 109.47225 * 143.33234 * 8 7 6 37 37 H 1.09004 * 109.47003 * 59.99427 * 15 13 12 38 38 H 1.08994 * 109.47095 * 179.97438 * 15 13 12 39 39 H 1.08998 * 109.47026 * 299.99722 * 15 13 12 40 40 H 1.09002 * 109.47181 * 295.00218 * 16 13 12 41 41 H 1.09003 * 109.47259 * 55.00142 * 16 13 12 42 42 H 0.96997 * 119.99937 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.47229 * 334.29225 * 26 25 9 44 44 H 1.09005 * 109.46779 * 214.29048 * 26 25 9 45 45 H 1.07993 * 120.00037 * 305.24553 * 27 26 25 46 46 H 1.07998 * 120.00429 * 359.97438 * 28 27 26 47 47 H 1.08001 * 120.00220 * 179.72631 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1359 -0.5114 1.2868 5 6 2.9497 0.4811 2.3537 6 6 1.5108 0.6893 2.5845 7 6 0.3638 0.8557 2.7686 8 6 -1.0749 1.0648 2.9994 9 6 4.4634 -0.8981 1.1945 10 7 5.4955 -0.1078 1.0154 11 7 6.5760 -0.8026 0.9770 12 6 6.3004 -2.0663 1.1340 13 6 7.2922 -3.2008 1.1563 14 1 6.7635 -4.1428 1.3016 15 6 8.0508 -3.2412 -0.1718 16 6 8.2828 -2.9898 2.3032 17 6 9.1977 -4.1831 2.4027 18 1 9.0838 -5.0095 1.7169 19 6 10.1796 -4.2202 3.3700 20 7 10.3180 -3.2140 4.2054 21 14 11.3132 -5.6998 3.4937 22 1 12.5089 -5.4799 2.6411 23 1 11.7381 -5.8811 4.9051 24 1 10.5936 -6.9145 3.0336 25 7 4.9442 -2.1728 1.2718 26 6 4.1688 -3.4001 1.4684 27 6 3.8542 -4.0155 0.1292 28 6 4.1836 -5.2599 -0.1134 29 1 -1.0499 0.0001 0.0002 30 1 3.0088 1.0178 -0.1481 31 1 3.0097 -0.6359 -0.8065 32 1 3.4163 0.1209 3.2705 33 1 3.4102 1.4236 2.0576 34 1 -1.2888 0.9751 4.0644 35 1 -1.3576 2.0593 2.6545 36 1 -1.6437 0.3144 2.4502 37 1 8.5794 -2.2991 -0.3171 38 1 8.7684 -4.0614 -0.1555 39 1 7.3451 -3.3915 -0.9888 40 1 8.8737 -2.0938 2.1127 41 1 7.7359 -2.8722 3.2387 42 1 11.0089 -3.2400 4.8857 43 1 3.2397 -3.1637 1.9869 44 1 4.7486 -4.1046 2.0647 45 1 3.3572 -3.4305 -0.6305 46 1 4.6809 -5.8448 0.6461 47 1 3.9542 -5.7023 -1.0716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121501753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:06 Heat of formation + Delta-G solvation = 196.226120 kcal Electronic energy + Delta-G solvation = -27277.531817 eV Core-core repulsion = 23658.217851 eV Total energy + Delta-G solvation = -3619.313966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.12567 -39.46051 -37.39252 -36.78496 -34.98672 -34.27833 -33.97553 -33.61795 -30.96794 -29.94919 -28.87332 -28.05204 -27.73340 -25.98933 -25.81716 -23.74974 -22.31390 -21.03626 -20.64475 -19.32554 -18.70300 -18.46568 -17.86967 -17.51038 -17.02196 -16.51092 -16.18574 -16.03370 -15.59976 -15.53575 -15.01800 -14.67147 -14.65702 -14.36221 -14.27033 -14.23160 -14.10243 -13.71857 -13.64345 -13.39958 -12.97737 -12.76611 -12.71476 -12.60902 -12.45609 -12.26320 -12.07282 -11.80222 -11.68582 -11.50865 -11.29743 -11.17601 -11.13241 -10.81359 -10.54897 -10.52108 -10.40872 -10.13029 -9.95706 -8.15084 -6.26508 0.58414 0.74525 1.23263 1.45018 1.46541 1.56702 1.68328 1.72734 1.81350 1.95458 2.11812 2.44843 2.78931 3.19324 3.30651 3.37332 3.45206 3.66348 3.77269 3.85762 3.91222 4.08629 4.15661 4.27896 4.36070 4.42447 4.47067 4.51121 4.53810 4.68585 4.75964 4.86352 4.87535 4.92399 4.98214 5.03722 5.09688 5.10912 5.17353 5.32937 5.35763 5.46176 5.47819 5.57085 5.65518 5.69933 5.84827 6.08828 6.21600 6.70744 6.72540 6.89257 7.42648 7.64482 8.97468 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017405 B = 0.002891 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.306260 B = 9684.203507 C =10200.148194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.215 4.215 3 C 0.180 3.820 4 N -0.447 5.447 5 C 0.187 3.813 6 C -0.224 4.224 7 C -0.148 4.148 8 C -0.043 4.043 9 C 0.333 3.667 10 N -0.335 5.335 11 N -0.324 5.324 12 C 0.216 3.784 13 C 0.010 3.990 14 H 0.094 0.906 15 C -0.117 4.117 16 C 0.049 3.951 17 C -0.526 4.526 18 H 0.078 0.922 19 C -0.002 4.002 20 N -0.937 5.937 21 Si 0.965 3.035 22 H -0.275 1.275 23 H -0.289 1.289 24 H -0.254 1.254 25 N -0.455 5.455 26 C 0.134 3.866 27 C -0.191 4.191 28 C -0.142 4.142 29 H 0.251 0.749 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.061 0.939 40 H -0.009 1.009 41 H -0.021 1.021 42 H 0.261 0.739 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.336 0.766 -8.222 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.215 4.215 3 C 0.055 3.945 4 N -0.172 5.172 5 C 0.061 3.939 6 C -0.225 4.225 7 C -0.149 4.149 8 C -0.099 4.099 9 C -0.024 4.024 10 N -0.180 5.180 11 N -0.163 5.163 12 C -0.053 4.053 13 C -0.010 4.010 14 H 0.112 0.888 15 C -0.175 4.175 16 C 0.011 3.989 17 C -0.564 4.564 18 H 0.096 0.904 19 C -0.200 4.200 20 N -0.577 5.577 21 Si 0.789 3.211 22 H -0.201 1.201 23 H -0.215 1.215 24 H -0.178 1.178 25 N -0.146 5.146 26 C 0.013 3.987 27 C -0.210 4.210 28 C -0.179 4.179 29 H 0.267 0.733 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.010 0.990 41 H -0.003 1.003 42 H 0.070 0.930 43 H 0.133 0.867 44 H 0.122 0.878 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -24.714 1.666 -8.160 26.080 hybrid contribution 0.691 -0.610 0.637 1.120 sum -24.023 1.056 -7.523 25.196 Atomic orbital electron populations 1.25497 0.96294 0.98828 0.97165 1.22448 0.93832 1.02303 1.02944 1.18862 0.86609 1.00258 0.88800 1.58519 1.09060 1.42339 1.07275 1.18765 0.88012 0.93635 0.93456 1.21596 0.93682 1.03477 1.03737 1.23135 0.94576 0.98806 0.98389 1.19171 0.82786 1.04123 1.03789 1.22118 0.91596 0.82943 1.05736 1.74481 0.95396 1.27340 1.20734 1.73987 1.19930 1.01694 1.20703 1.25425 0.82542 0.96706 1.00596 1.19766 0.91764 0.90852 0.98665 0.88798 1.21576 0.99732 1.02417 0.93780 1.18867 0.92683 0.96406 0.90922 1.21558 1.15278 1.03934 1.15606 0.90430 1.26003 0.99436 0.99160 0.95358 1.70149 1.34481 1.33327 1.19792 0.85446 0.78957 0.79625 0.77026 1.20057 1.21526 1.17762 1.46555 1.06893 1.08192 1.53003 1.21213 0.96735 0.82784 0.97974 1.22854 1.03674 0.97829 0.96673 1.24219 0.95860 0.95561 1.02297 0.73313 0.90915 0.88708 0.89382 0.90907 0.89005 0.88605 0.88079 0.94000 0.90577 0.92017 0.99031 1.00258 0.93011 0.86678 0.87841 0.87097 0.87247 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 17.24 74.32 1.28 -1.27 16 2 C -0.21 -4.58 11.13 31.13 0.35 -4.23 16 3 C 0.18 4.38 5.41 84.50 0.46 4.83 16 4 N -0.45 -12.28 4.51 -727.12 -3.28 -15.56 16 5 C 0.19 5.05 5.30 84.50 0.45 5.50 16 6 C -0.22 -5.45 11.16 31.13 0.35 -5.10 16 7 C -0.15 -2.88 12.01 31.13 0.37 -2.50 16 8 C -0.04 -0.40 10.28 70.18 0.72 0.32 16 9 C 0.33 11.21 6.33 260.11 1.65 12.86 16 10 N -0.34 -13.59 12.12 -58.00 -0.70 -14.29 16 11 N -0.32 -14.60 12.18 -49.54 -0.60 -15.20 16 12 C 0.22 8.67 6.58 137.64 0.91 9.58 16 13 C 0.01 0.43 2.71 -11.54 -0.03 0.39 16 14 H 0.09 3.38 7.04 -2.39 -0.02 3.36 16 15 C -0.12 -4.32 8.99 71.98 0.65 -3.67 16 16 C 0.05 2.61 4.43 29.85 0.13 2.74 16 17 C -0.53 -28.37 8.41 25.60 0.22 -28.15 16 18 H 0.08 3.81 7.06 -2.91 -0.02 3.79 16 19 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 20 N -0.94 -57.68 13.29 21.45 0.28 -57.40 16 21 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 24 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 25 N -0.46 -15.10 2.79 -518.90 -1.45 -16.55 16 26 C 0.13 3.34 6.25 85.63 0.53 3.87 16 27 C -0.19 -3.96 9.85 25.65 0.25 -3.71 16 28 C -0.14 -2.42 14.32 67.78 0.97 -1.45 16 29 H 0.25 1.74 7.80 -4.42 -0.03 1.71 16 30 H 0.07 1.79 7.91 -2.39 -0.02 1.78 16 31 H 0.09 2.27 7.94 -2.39 -0.02 2.25 16 32 H 0.09 2.52 8.05 -2.39 -0.02 2.50 16 33 H 0.07 2.00 7.97 -2.39 -0.02 1.98 16 34 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.08 2.77 6.95 -2.39 -0.02 2.75 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 41 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 42 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.12 2.62 8.13 -2.39 -0.02 2.61 16 44 H 0.10 2.54 7.06 -2.38 -0.02 2.52 16 45 H 0.11 2.30 8.06 -2.91 -0.02 2.28 16 46 H 0.11 1.80 7.84 -2.91 -0.02 1.78 16 47 H 0.12 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -74.83 406.76 6.93 -67.90 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.94 Total: 15.61 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 9.71 Total: -9.65 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -5.75 Total: -119.00 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -74.83 6.93 -67.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121501753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 264.122 kcal (2) G-P(sol) polarization free energy of solvation -74.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds