Wall clock time and date at job start Tue Mar 31 2020 14:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38295 * 120.08636 * 2 1 4 4 C 1.37831 * 120.23214 * 180.02562 * 3 2 1 5 5 C 1.39678 * 120.27601 * 359.95643 * 4 3 2 6 6 C 1.38609 * 119.03259 * 0.20857 * 5 4 3 7 7 C 1.38160 * 120.47172 * 0.08047 * 6 5 4 8 8 C 1.51224 * 108.53721 * 180.25211 * 6 5 4 9 9 C 1.53739 * 104.55514 * 359.76094 * 8 6 5 10 10 N 1.39662 * 129.32905 * 180.02562 * 5 4 3 11 11 C 1.38671 * 124.96376 * 0.02671 * 10 5 4 12 12 N 1.31221 * 126.47253 * 354.38073 * 11 10 5 13 13 N 1.28533 * 109.85358 * 179.97438 * 12 11 10 14 14 C 1.30324 * 110.05124 * 359.97438 * 13 12 11 15 15 C 1.50691 * 126.34183 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.47085 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47008 * 60.02765 * 15 14 13 18 18 C 1.52998 * 109.47706 * 300.02875 * 15 14 13 19 19 C 1.50700 * 109.47662 * 185.00049 * 18 15 14 20 20 H 1.08003 * 119.99516 * 0.02562 * 19 18 15 21 21 C 1.37870 * 120.00302 * 179.97438 * 19 18 15 22 22 N 1.31517 * 120.00286 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 119.99855 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46932 * 90.00457 * 23 21 19 25 25 H 1.48501 * 109.46781 * 210.00060 * 23 21 19 26 26 H 1.48494 * 109.47128 * 330.00128 * 23 21 19 27 27 N 1.36482 * 126.47499 * 174.37923 * 11 10 5 28 28 C 1.46500 * 127.13490 * 0.02562 * 27 11 10 29 29 H 1.08992 * 109.47089 * 89.99378 * 1 2 3 30 30 H 1.08994 * 109.47508 * 210.00306 * 1 2 3 31 31 H 1.09004 * 109.46695 * 330.00167 * 1 2 3 32 32 H 1.08001 * 119.88565 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.86292 * 179.97438 * 4 3 2 34 34 H 1.08003 * 119.92292 * 180.24424 * 7 6 5 35 35 H 1.08995 * 110.41674 * 240.98953 * 8 6 5 36 36 H 1.09005 * 110.41213 * 118.53027 * 8 6 5 37 37 H 1.09001 * 110.30100 * 241.06432 * 9 8 6 38 38 H 1.09005 * 110.29831 * 118.93010 * 9 8 6 39 39 H 1.09002 * 109.47245 * 59.99780 * 17 15 14 40 40 H 1.09001 * 109.47162 * 179.97438 * 17 15 14 41 41 H 1.09003 * 109.47498 * 299.99561 * 17 15 14 42 42 H 1.09001 * 109.46732 * 305.00069 * 18 15 14 43 43 H 1.08996 * 109.47387 * 64.99322 * 18 15 14 44 44 H 0.97001 * 120.00075 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.47027 * 274.74689 * 28 27 11 46 46 H 1.09002 * 109.46989 * 34.75219 * 28 27 11 47 47 H 1.09001 * 109.46767 * 154.75158 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2003 1.1966 0.0000 4 6 3.5786 1.2001 -0.0005 5 6 4.2859 -0.0043 -0.0002 6 6 3.5815 -1.1981 -0.0037 7 6 2.1999 -1.1963 -0.0091 8 6 4.5719 -2.3408 0.0039 9 6 5.9494 -1.6582 0.0061 10 7 5.6657 -0.2206 -0.0001 11 6 6.6267 0.7791 0.0001 12 7 6.4103 2.0692 -0.1030 13 7 7.5276 2.7036 -0.0663 14 6 8.5149 1.8626 0.0619 15 6 9.9790 2.2100 0.1426 16 1 10.5640 1.2961 0.2467 17 6 10.2231 3.1125 1.3537 18 6 10.4004 2.9429 -1.1326 19 6 11.8882 3.1815 -1.1066 20 1 12.4746 2.8438 -0.2649 21 6 12.5008 3.8300 -2.1578 22 7 13.7993 4.0378 -2.1354 23 14 11.4868 4.4122 -3.6147 24 1 11.0094 5.7958 -3.3641 25 1 12.3247 4.3921 -4.8406 26 1 10.3204 3.5115 -3.7975 27 7 7.9764 0.6070 0.1077 28 6 8.6983 -0.6604 0.2447 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6599 2.1317 -0.0004 33 1 4.1140 2.1381 -0.0009 34 1 1.6599 -2.1316 -0.0078 35 1 4.4525 -2.9534 -0.8897 36 1 4.4463 -2.9468 0.9012 37 1 6.5109 -1.9367 -0.8857 38 1 6.5048 -1.9301 0.9037 39 1 9.9229 2.5904 2.2623 40 1 11.2822 3.3634 1.4123 41 1 9.6381 4.0264 1.2497 42 1 10.1448 2.3364 -2.0015 43 1 9.8800 3.8988 -1.1912 44 1 14.2302 4.4944 -2.8748 45 1 8.7311 -0.9481 1.2955 46 1 8.1864 -1.4338 -0.3280 47 1 9.7144 -0.5422 -0.1315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121513937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:43 Heat of formation + Delta-G solvation = 113.301517 kcal Electronic energy + Delta-G solvation = -27362.731331 eV Core-core repulsion = 23739.821485 eV Total energy + Delta-G solvation = -3622.909846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.76229 -40.68098 -37.38222 -35.56912 -34.70843 -33.07989 -32.20040 -31.74886 -29.70851 -28.55595 -27.54250 -27.43803 -26.68490 -24.12964 -23.17320 -22.84917 -21.94341 -20.81811 -20.50293 -19.16988 -17.55350 -17.02086 -16.79999 -16.40064 -16.01462 -15.62336 -15.10533 -14.63629 -14.33022 -14.05718 -13.86217 -13.78019 -13.54718 -13.51006 -13.26311 -13.04809 -12.86721 -12.59822 -12.42735 -12.39208 -12.11889 -11.94238 -11.72288 -11.42645 -11.21994 -11.11401 -10.84806 -10.82024 -10.67880 -10.27050 -10.07974 -9.86470 -9.83949 -9.79150 -9.19557 -8.91733 -8.74428 -8.55291 -7.28314 -6.07262 -4.05932 1.17385 1.28817 1.92692 2.20604 2.89765 3.22651 3.34027 3.40926 3.47664 3.63270 4.06397 4.17921 4.45370 4.45569 4.59804 4.75071 4.77730 4.82024 4.88185 4.94414 5.01427 5.11111 5.18832 5.27197 5.28875 5.30098 5.39574 5.40942 5.43327 5.53307 5.68269 5.75429 5.83810 5.93120 6.01882 6.11280 6.15146 6.24344 6.31604 6.50236 6.61264 6.62643 6.69293 6.79404 6.98774 7.04399 7.18962 7.35558 7.41094 7.73220 8.46674 8.94934 9.10961 9.55345 11.05230 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020259 B = 0.002793 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.739451 B =10024.270864 C =10525.772387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.125 4.125 3 C -0.084 4.084 4 C -0.137 4.137 5 C 0.183 3.817 6 C -0.153 4.153 7 C -0.073 4.073 8 C -0.079 4.079 9 C 0.112 3.888 10 N -0.527 5.527 11 C 0.418 3.582 12 N -0.324 5.324 13 N -0.278 5.278 14 C 0.208 3.792 15 C 0.010 3.990 16 H 0.078 0.922 17 C -0.127 4.127 18 C 0.000 4.000 19 C -0.519 4.519 20 H 0.077 0.923 21 C 0.071 3.929 22 N -0.901 5.901 23 Si 0.875 3.125 24 H -0.274 1.274 25 H -0.288 1.288 26 H -0.267 1.267 27 N -0.499 5.499 28 C 0.067 3.933 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.144 0.856 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.013 0.987 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.996 -16.482 6.412 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.103 4.103 4 C -0.159 4.159 5 C 0.085 3.915 6 C -0.157 4.157 7 C -0.091 4.091 8 C -0.116 4.116 9 C -0.010 4.010 10 N -0.238 5.238 11 C 0.064 3.936 12 N -0.170 5.170 13 N -0.114 5.114 14 C -0.060 4.060 15 C -0.011 4.011 16 H 0.096 0.904 17 C -0.185 4.185 18 C -0.038 4.038 19 C -0.556 4.556 20 H 0.095 0.905 21 C -0.131 4.131 22 N -0.540 5.540 23 Si 0.703 3.297 24 H -0.200 1.200 25 H -0.215 1.215 26 H -0.191 1.191 27 N -0.197 5.197 28 C -0.076 4.076 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.144 0.856 33 H 0.162 0.838 34 H 0.140 0.860 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.410 -15.110 6.166 27.723 hybrid contribution 0.459 -1.037 -0.788 1.381 sum -21.951 -16.147 5.377 27.776 Atomic orbital electron populations 1.20668 0.91110 1.02438 1.01992 1.19693 0.95917 0.92813 1.04244 1.20773 0.92983 0.97696 0.98807 1.20947 0.93834 0.97406 1.03720 1.18047 0.80841 0.94923 0.97672 1.19750 0.93685 0.93379 1.08915 1.20098 0.91251 0.97710 1.00050 1.21027 0.90508 0.96289 1.03806 1.22236 0.98660 0.77844 1.02279 1.42677 1.01252 1.03092 1.76782 1.20537 0.79383 0.89717 1.03965 1.74517 1.19329 0.98076 1.25046 1.74034 0.93607 1.25197 1.18573 1.25442 0.99362 0.78519 1.02641 1.19751 0.81457 0.99973 0.99899 0.90395 1.21694 1.03580 0.99066 0.94185 1.19604 0.97638 0.95724 0.90823 1.21013 0.90331 1.37970 1.06330 0.90543 1.24940 0.94715 0.95293 0.98104 1.69898 1.09092 1.42545 1.32441 0.86842 0.80505 0.80043 0.82354 1.19954 1.21452 1.19142 1.46082 1.05123 1.09301 1.59227 1.22269 0.99067 0.83002 1.03281 0.91582 0.91916 0.91723 0.85614 0.83792 0.86044 0.89097 0.89113 0.90391 0.90435 0.94740 0.90119 0.92051 0.96838 0.95408 0.92670 0.90390 0.89718 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.02 36.01 0.36 -0.35 16 2 C -0.12 -1.21 5.88 -104.59 -0.62 -1.82 16 3 C -0.08 -0.94 9.68 -39.71 -0.38 -1.32 16 4 C -0.14 -1.90 9.62 -39.19 -0.38 -2.28 16 5 C 0.18 2.47 6.65 -83.62 -0.56 1.91 16 6 C -0.15 -1.61 6.23 -104.26 -0.65 -2.26 16 7 C -0.07 -0.68 9.70 -39.61 -0.38 -1.06 16 8 C -0.08 -0.58 6.94 -27.24 -0.19 -0.77 16 9 C 0.11 0.99 5.54 -3.64 -0.02 0.97 16 10 N -0.53 -7.20 3.24 -114.25 -0.37 -7.57 16 11 C 0.42 7.08 8.55 -318.70 -2.73 4.36 16 12 N -0.32 -6.48 10.22 30.34 0.31 -6.17 16 13 N -0.28 -5.95 12.18 32.99 0.40 -5.55 16 14 C 0.21 4.00 6.57 -154.04 -1.01 2.99 16 15 C 0.01 0.20 2.70 -91.78 -0.25 -0.05 16 16 H 0.08 1.39 6.83 -51.93 -0.35 1.04 16 17 C -0.13 -2.36 8.98 37.16 0.33 -2.03 16 18 C 0.00 0.01 3.50 -27.88 -0.10 -0.09 16 19 C -0.52 -14.14 8.96 -34.44 -0.31 -14.45 16 20 H 0.08 2.17 7.30 -52.48 -0.38 1.79 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 23 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 24 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.27 -6.68 6.54 56.52 0.37 -6.31 16 27 N -0.50 -7.95 3.21 -121.43 -0.39 -8.34 16 28 C 0.07 0.70 9.85 59.85 0.59 1.29 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.14 2.29 6.44 -52.49 -0.34 1.95 16 34 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.61 7.00 -51.93 -0.36 0.24 16 38 H 0.08 0.56 7.48 -51.93 -0.39 0.17 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.57 6.95 -51.93 -0.36 1.21 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 43 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.68 5.29 -51.93 -0.27 0.41 16 47 H 0.10 1.06 7.03 -51.93 -0.36 0.70 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -34.62 374.42 -11.67 -46.29 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -6.98 Total: -2.30 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -6.38 Total: -13.03 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.73 Total: -54.05 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.62 -11.67 -46.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121513937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.593 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds