Wall clock time and date at job start Tue Mar 31 2020 14:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38295 * 120.08636 * 2 1 4 4 C 1.37831 * 120.23214 * 180.02562 * 3 2 1 5 5 C 1.39678 * 120.27601 * 359.95643 * 4 3 2 6 6 C 1.38609 * 119.03259 * 0.20857 * 5 4 3 7 7 C 1.38160 * 120.47172 * 0.08047 * 6 5 4 8 8 C 1.51224 * 108.53721 * 180.25211 * 6 5 4 9 9 C 1.53739 * 104.55514 * 359.76094 * 8 6 5 10 10 N 1.39662 * 129.32905 * 180.02562 * 5 4 3 11 11 C 1.38671 * 124.96376 * 0.02671 * 10 5 4 12 12 N 1.31221 * 126.47253 * 354.38073 * 11 10 5 13 13 N 1.28533 * 109.85358 * 179.97438 * 12 11 10 14 14 C 1.30324 * 110.05124 * 359.97438 * 13 12 11 15 15 C 1.50691 * 126.34183 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.47085 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47008 * 60.02765 * 15 14 13 18 18 C 1.52998 * 109.47706 * 300.02875 * 15 14 13 19 19 C 1.50700 * 109.47662 * 185.00049 * 18 15 14 20 20 H 1.08003 * 119.99516 * 0.02562 * 19 18 15 21 21 C 1.37870 * 120.00302 * 179.97438 * 19 18 15 22 22 N 1.31517 * 120.00286 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 119.99855 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46932 * 90.00457 * 23 21 19 25 25 H 1.48501 * 109.46781 * 210.00060 * 23 21 19 26 26 H 1.48494 * 109.47128 * 330.00128 * 23 21 19 27 27 N 1.36482 * 126.47499 * 174.37923 * 11 10 5 28 28 C 1.46500 * 127.13490 * 0.02562 * 27 11 10 29 29 H 1.08992 * 109.47089 * 89.99378 * 1 2 3 30 30 H 1.08994 * 109.47508 * 210.00306 * 1 2 3 31 31 H 1.09004 * 109.46695 * 330.00167 * 1 2 3 32 32 H 1.08001 * 119.88565 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.86292 * 179.97438 * 4 3 2 34 34 H 1.08003 * 119.92292 * 180.24424 * 7 6 5 35 35 H 1.08995 * 110.41674 * 240.98953 * 8 6 5 36 36 H 1.09005 * 110.41213 * 118.53027 * 8 6 5 37 37 H 1.09001 * 110.30100 * 241.06432 * 9 8 6 38 38 H 1.09005 * 110.29831 * 118.93010 * 9 8 6 39 39 H 1.09002 * 109.47245 * 59.99780 * 17 15 14 40 40 H 1.09001 * 109.47162 * 179.97438 * 17 15 14 41 41 H 1.09003 * 109.47498 * 299.99561 * 17 15 14 42 42 H 1.09001 * 109.46732 * 305.00069 * 18 15 14 43 43 H 1.08996 * 109.47387 * 64.99322 * 18 15 14 44 44 H 0.97001 * 120.00075 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.47027 * 274.74689 * 28 27 11 46 46 H 1.09002 * 109.46989 * 34.75219 * 28 27 11 47 47 H 1.09001 * 109.46767 * 154.75158 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2003 1.1966 0.0000 4 6 3.5786 1.2001 -0.0005 5 6 4.2859 -0.0043 -0.0002 6 6 3.5815 -1.1981 -0.0037 7 6 2.1999 -1.1963 -0.0091 8 6 4.5719 -2.3408 0.0039 9 6 5.9494 -1.6582 0.0061 10 7 5.6657 -0.2206 -0.0001 11 6 6.6267 0.7791 0.0001 12 7 6.4103 2.0692 -0.1030 13 7 7.5276 2.7036 -0.0663 14 6 8.5149 1.8626 0.0619 15 6 9.9790 2.2100 0.1426 16 1 10.5640 1.2961 0.2467 17 6 10.2231 3.1125 1.3537 18 6 10.4004 2.9429 -1.1326 19 6 11.8882 3.1815 -1.1066 20 1 12.4746 2.8438 -0.2649 21 6 12.5008 3.8300 -2.1578 22 7 13.7993 4.0378 -2.1354 23 14 11.4868 4.4122 -3.6147 24 1 11.0094 5.7958 -3.3641 25 1 12.3247 4.3921 -4.8406 26 1 10.3204 3.5115 -3.7975 27 7 7.9764 0.6070 0.1077 28 6 8.6983 -0.6604 0.2447 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6599 2.1317 -0.0004 33 1 4.1140 2.1381 -0.0009 34 1 1.6599 -2.1316 -0.0078 35 1 4.4525 -2.9534 -0.8897 36 1 4.4463 -2.9468 0.9012 37 1 6.5109 -1.9367 -0.8857 38 1 6.5048 -1.9301 0.9037 39 1 9.9229 2.5904 2.2623 40 1 11.2822 3.3634 1.4123 41 1 9.6381 4.0264 1.2497 42 1 10.1448 2.3364 -2.0015 43 1 9.8800 3.8988 -1.1912 44 1 14.2302 4.4944 -2.8748 45 1 8.7311 -0.9481 1.2955 46 1 8.1864 -1.4338 -0.3280 47 1 9.7144 -0.5422 -0.1315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121513937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:42 Heat of formation + Delta-G solvation = 96.782898 kcal Electronic energy + Delta-G solvation = -27363.447632 eV Core-core repulsion = 23739.821485 eV Total energy + Delta-G solvation = -3623.626147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.06475 -41.51785 -38.22754 -37.20655 -35.91924 -34.47870 -33.73947 -32.58581 -30.70487 -29.91932 -29.08569 -28.47510 -27.42139 -25.78659 -23.99504 -23.83544 -23.53644 -21.78363 -21.53249 -20.56806 -19.10751 -18.54779 -17.84437 -17.56158 -16.99553 -16.53205 -16.29528 -15.91418 -15.62165 -15.49321 -15.13127 -14.71219 -14.58213 -14.53889 -14.39143 -14.15330 -13.87597 -13.78368 -13.45012 -13.15581 -13.07973 -13.01363 -12.96718 -12.84202 -12.66575 -12.53804 -12.31425 -11.95751 -11.90737 -11.77112 -11.72056 -11.52884 -11.37126 -11.20055 -11.01464 -10.76940 -9.93474 -9.72022 -8.30157 -8.28400 -6.30796 0.26869 0.44505 0.83083 0.98478 1.31030 1.34337 1.44453 1.84178 1.91784 2.33387 2.80922 3.05880 3.31248 3.40654 3.48730 3.62743 3.84258 3.97619 4.03419 4.10192 4.16019 4.21462 4.26030 4.33669 4.40530 4.45520 4.51933 4.52535 4.58899 4.72624 4.83437 4.88785 4.92085 4.94535 4.98185 4.99911 5.08926 5.14550 5.22287 5.22909 5.32622 5.36537 5.44885 5.52710 5.56213 5.69600 5.72237 5.78582 6.16821 6.26443 6.31012 6.74843 7.33129 7.74974 8.85623 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020259 B = 0.002793 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.739451 B =10024.270864 C =10525.772387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.121 4.121 3 C -0.097 4.097 4 C -0.166 4.166 5 C 0.143 3.857 6 C -0.145 4.145 7 C -0.073 4.073 8 C -0.071 4.071 9 C 0.100 3.900 10 N -0.530 5.530 11 C 0.429 3.571 12 N -0.368 5.368 13 N -0.317 5.317 14 C 0.196 3.804 15 C 0.019 3.981 16 H 0.098 0.902 17 C -0.120 4.120 18 C 0.008 3.992 19 C -0.512 4.512 20 H 0.058 0.942 21 C 0.019 3.981 22 N -0.940 5.940 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.265 1.265 27 N -0.494 5.494 28 C 0.054 3.946 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.134 0.866 33 H 0.110 0.890 34 H 0.157 0.843 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.006 0.994 43 H 0.011 0.989 44 H 0.266 0.734 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.363 -20.271 6.628 32.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.122 4.122 3 C -0.116 4.116 4 C -0.188 4.188 5 C 0.046 3.954 6 C -0.149 4.149 7 C -0.091 4.091 8 C -0.108 4.108 9 C -0.021 4.021 10 N -0.242 5.242 11 C 0.073 3.927 12 N -0.213 5.213 13 N -0.154 5.154 14 C -0.074 4.074 15 C -0.002 4.002 16 H 0.116 0.884 17 C -0.178 4.178 18 C -0.030 4.030 19 C -0.550 4.550 20 H 0.077 0.923 21 C -0.179 4.179 22 N -0.581 5.581 23 Si 0.755 3.245 24 H -0.198 1.198 25 H -0.205 1.205 26 H -0.190 1.190 27 N -0.192 5.192 28 C -0.086 4.086 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.152 0.848 33 H 0.129 0.871 34 H 0.174 0.826 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.024 0.976 43 H 0.029 0.971 44 H 0.075 0.925 45 H 0.122 0.878 46 H 0.131 0.869 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.801 -18.950 6.388 31.859 hybrid contribution 1.049 0.043 -0.794 1.317 sum -23.752 -18.907 5.594 30.869 Atomic orbital electron populations 1.20733 0.88798 1.03632 1.02908 1.20104 0.97597 0.92290 1.02232 1.20946 0.92141 0.99198 0.99270 1.20913 0.95081 0.96781 1.06039 1.18392 0.81177 0.95897 0.99899 1.20196 0.94464 0.93401 1.06847 1.20543 0.91015 0.98904 0.98665 1.21166 0.88132 0.95264 1.06221 1.22679 1.00333 0.75108 1.03948 1.43082 1.00748 1.04050 1.76331 1.20754 0.80393 0.89794 1.01732 1.74423 1.19146 1.00090 1.27689 1.73915 0.94633 1.27149 1.19699 1.25078 0.98588 0.79915 1.03800 1.19529 0.82374 1.00410 0.97856 0.88353 1.21596 1.02390 0.98673 0.95143 1.19435 0.95211 0.95376 0.93028 1.21259 0.91848 1.36621 1.05276 0.92338 1.25664 0.95569 0.95902 1.00770 1.70001 1.10520 1.44043 1.33561 0.85969 0.79184 0.79480 0.79830 1.19830 1.20459 1.18981 1.46188 1.04790 1.09806 1.58422 1.22730 0.98915 0.81314 1.05666 0.90663 0.90018 0.91323 0.84829 0.87145 0.82584 0.86789 0.86397 0.89106 0.88334 0.92011 0.91363 0.93556 0.97565 0.97094 0.92468 0.87763 0.86917 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.02 71.24 0.71 -0.39 16 2 C -0.12 -2.08 5.88 -19.85 -0.12 -2.19 16 3 C -0.10 -2.19 9.68 22.19 0.21 -1.97 16 4 C -0.17 -4.84 9.62 22.52 0.22 -4.63 16 5 C 0.14 3.78 6.65 38.33 0.25 4.03 16 6 C -0.14 -2.64 6.23 -19.63 -0.12 -2.76 16 7 C -0.07 -1.12 9.70 22.25 0.22 -0.90 16 8 C -0.07 -0.72 6.94 30.26 0.21 -0.51 16 9 C 0.10 1.41 5.54 86.62 0.48 1.89 16 10 N -0.53 -13.85 3.24 -515.39 -1.67 -15.52 16 11 C 0.43 14.54 8.55 260.05 2.22 16.76 16 12 N -0.37 -15.39 10.22 -57.93 -0.59 -15.98 16 13 N -0.32 -14.15 12.18 -49.56 -0.60 -14.76 16 14 C 0.20 7.59 6.57 137.64 0.90 8.49 16 15 C 0.02 0.76 2.70 -11.54 -0.03 0.73 16 16 H 0.10 3.42 6.83 -2.38 -0.02 3.40 16 17 C -0.12 -4.50 8.98 71.98 0.65 -3.85 16 18 C 0.01 0.39 3.50 29.85 0.10 0.49 16 19 C -0.51 -28.41 8.96 25.60 0.23 -28.18 16 20 H 0.06 3.40 7.30 -2.91 -0.02 3.38 16 21 C 0.02 1.09 5.47 84.65 0.46 1.55 16 22 N -0.94 -57.70 13.96 21.44 0.30 -57.40 16 23 Si 0.93 46.26 27.47 68.60 1.88 48.15 16 24 H -0.27 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.27 -13.02 6.54 99.48 0.65 -12.37 16 27 N -0.49 -15.26 3.21 -538.08 -1.73 -16.99 16 28 C 0.05 0.99 9.85 127.77 1.26 2.24 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 31 H 0.07 0.68 8.09 -2.39 -0.02 0.67 16 32 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.11 3.90 6.44 -2.91 -0.02 3.88 16 34 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.09 1.04 7.00 -2.39 -0.02 1.03 16 38 H 0.10 0.98 7.48 -2.38 -0.02 0.96 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.70 6.95 -2.39 -0.02 2.68 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.01 0.30 7.20 -2.39 -0.02 0.28 16 43 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.11 1.39 5.29 -2.39 -0.01 1.38 16 47 H 0.10 1.89 7.03 -2.39 -0.02 1.87 16 Total: -1.00 -79.67 374.42 6.38 -73.29 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.92 Total: 8.40 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 7.87 Total: -9.20 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -4.29 Total: -120.64 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.88 Total: 48.15 kcal Total: -79.67 6.38 -73.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121513937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.072 kcal (2) G-P(sol) polarization free energy of solvation -79.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds