Wall clock time and date at job start Tue Mar 31 2020 14:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38309 * 120.08035 * 2 1 4 4 C 1.37824 * 120.22746 * 180.02562 * 3 2 1 5 5 C 1.39674 * 120.28147 * 359.97438 * 4 3 2 6 6 C 1.38611 * 119.03414 * 0.20489 * 5 4 3 7 7 C 1.38166 * 120.46838 * 0.08833 * 6 5 4 8 8 C 1.51221 * 108.54201 * 180.31349 * 6 5 4 9 9 C 1.53743 * 104.55669 * 359.73457 * 8 6 5 10 10 N 1.39674 * 129.33309 * 180.02562 * 5 4 3 11 11 C 1.38665 * 124.95905 * 359.95769 * 10 5 4 12 12 N 1.31221 * 126.47737 * 354.36915 * 11 10 5 13 13 N 1.28527 * 109.85353 * 179.97438 * 12 11 10 14 14 C 1.30318 * 110.05277 * 359.97438 * 13 12 11 15 15 C 1.50701 * 126.33961 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.46646 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47404 * 300.02531 * 15 14 13 18 18 C 1.52997 * 109.47415 * 60.03074 * 15 14 13 19 19 C 1.50701 * 109.47423 * 174.99648 * 18 15 14 20 20 H 1.07995 * 119.99766 * 359.72464 * 19 18 15 21 21 C 1.37879 * 119.99677 * 180.02562 * 19 18 15 22 22 N 1.31509 * 120.00050 * 359.72162 * 21 19 18 23 23 Si 1.86801 * 119.99303 * 179.72631 * 21 19 18 24 24 H 1.48497 * 109.47301 * 59.99998 * 23 21 19 25 25 H 1.48502 * 109.46768 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47049 * 299.99358 * 23 21 19 27 27 N 1.36486 * 126.47247 * 174.63218 * 11 10 5 28 28 C 1.46502 * 127.13583 * 0.03861 * 27 11 10 29 29 H 1.09003 * 109.46897 * 89.99856 * 1 2 3 30 30 H 1.09000 * 109.46963 * 209.99541 * 1 2 3 31 31 H 1.09001 * 109.47140 * 329.99727 * 1 2 3 32 32 H 1.07995 * 119.88445 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.86314 * 180.02562 * 4 3 2 34 34 H 1.07996 * 119.92467 * 180.29050 * 7 6 5 35 35 H 1.09005 * 110.42034 * 240.96826 * 8 6 5 36 36 H 1.08995 * 110.41695 * 118.50793 * 8 6 5 37 37 H 1.08998 * 110.30255 * 241.06840 * 9 8 6 38 38 H 1.09001 * 110.29652 * 118.92343 * 9 8 6 39 39 H 1.09004 * 109.47029 * 180.02562 * 17 15 14 40 40 H 1.08996 * 109.47437 * 300.00617 * 17 15 14 41 41 H 1.09002 * 109.47153 * 60.00023 * 17 15 14 42 42 H 1.09003 * 109.47256 * 54.99517 * 18 15 14 43 43 H 1.09009 * 109.46981 * 294.99884 * 18 15 14 44 44 H 0.97005 * 119.99370 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.46895 * 275.89833 * 28 27 11 46 46 H 1.09000 * 109.46690 * 35.89526 * 28 27 11 47 47 H 1.08995 * 109.46837 * 155.89648 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1968 0.0000 4 6 3.5785 1.2004 -0.0005 5 6 4.2859 -0.0040 -0.0005 6 6 3.5816 -1.1979 -0.0043 7 6 2.1999 -1.1962 -0.0099 8 6 4.5721 -2.3405 0.0044 9 6 5.9496 -1.6578 0.0069 10 7 5.6658 -0.2202 -0.0005 11 6 6.6266 0.7796 -0.0014 12 7 6.4101 2.0696 -0.1058 13 7 7.5273 2.7040 -0.0698 14 6 8.5146 1.8633 0.0593 15 6 9.9788 2.2109 0.1395 16 1 10.5639 1.2972 0.2445 17 6 10.4001 2.9424 -1.1365 18 6 10.2230 3.1146 1.3497 19 6 11.7017 3.3621 1.5017 20 1 12.3981 2.9155 0.8075 21 6 12.1659 4.1536 2.5309 22 7 11.3179 4.6970 3.3764 23 14 13.9995 4.4541 2.7238 24 1 14.5247 5.1117 1.5003 25 1 14.2363 5.3323 3.8977 26 1 14.6949 3.1578 2.9265 27 7 7.9767 0.6074 0.1013 28 6 8.6992 -0.6603 0.2328 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6597 2.1318 0.0004 33 1 4.1138 2.1383 -0.0001 34 1 1.6600 -2.1315 -0.0081 35 1 4.4532 -2.9537 -0.8890 36 1 4.4461 -2.9461 0.9018 37 1 6.5116 -1.9367 -0.8845 38 1 6.5044 -1.9291 0.9050 39 1 11.4592 3.1934 -1.0786 40 1 10.2261 2.2987 -1.9987 41 1 9.8150 3.8561 -1.2415 42 1 9.8415 2.6295 2.2482 43 1 9.7087 4.0645 1.2035 44 1 11.6445 5.2542 4.1002 45 1 8.7178 -0.9608 1.2804 46 1 8.1969 -1.4275 -0.3564 47 1 9.7202 -0.5356 -0.1277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121513938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:48 Heat of formation + Delta-G solvation = 110.280596 kcal Electronic energy + Delta-G solvation = -27281.388569 eV Core-core repulsion = 23658.347726 eV Total energy + Delta-G solvation = -3623.040843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.65092 -40.60961 -37.31096 -35.42733 -34.60866 -33.02567 -32.17284 -31.67398 -29.61958 -28.34238 -27.44840 -26.94606 -26.61434 -24.17089 -23.11784 -22.76733 -22.13664 -20.81747 -20.41701 -19.13855 -17.45228 -16.75711 -16.65545 -16.25034 -15.85758 -15.53498 -15.03932 -14.57936 -14.48757 -14.06842 -13.81560 -13.70752 -13.50357 -13.29264 -13.16865 -12.98875 -12.77347 -12.41334 -12.39127 -12.24403 -12.08556 -11.76623 -11.65405 -11.31517 -11.10841 -10.93108 -10.79834 -10.72488 -10.62726 -10.47451 -10.15295 -9.90228 -9.75458 -9.53482 -9.13229 -8.85353 -8.62933 -8.36690 -7.19695 -6.00463 -4.04456 1.24318 1.35471 2.01248 2.31612 2.98599 3.31678 3.34516 3.37318 3.38709 3.69840 4.12556 4.24004 4.43121 4.50227 4.65974 4.82838 4.85631 4.87726 4.96154 5.02648 5.08291 5.17371 5.26342 5.34720 5.34808 5.37563 5.44565 5.46760 5.49174 5.61327 5.74250 5.82849 5.90580 6.03873 6.10422 6.20179 6.24326 6.31365 6.39511 6.56806 6.68298 6.70481 6.83468 6.92484 7.05148 7.12666 7.49153 7.62243 7.78480 7.98753 8.34285 9.00968 9.23279 9.58970 11.10509 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.002580 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.268273 B =10848.693663 C =11365.591268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.126 4.126 3 C -0.083 4.083 4 C -0.137 4.137 5 C 0.184 3.816 6 C -0.154 4.154 7 C -0.073 4.073 8 C -0.079 4.079 9 C 0.113 3.887 10 N -0.527 5.527 11 C 0.415 3.585 12 N -0.324 5.324 13 N -0.276 5.276 14 C 0.213 3.787 15 C 0.000 4.000 16 H 0.071 0.929 17 C -0.126 4.126 18 C 0.039 3.961 19 C -0.522 4.522 20 H 0.058 0.942 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.892 3.108 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.278 1.278 27 N -0.500 5.500 28 C 0.070 3.930 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.145 0.855 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.061 0.939 42 H 0.013 0.987 43 H 0.033 0.967 44 H 0.262 0.738 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.151 -17.828 -8.116 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.128 4.128 3 C -0.102 4.102 4 C -0.159 4.159 5 C 0.086 3.914 6 C -0.159 4.159 7 C -0.091 4.091 8 C -0.116 4.116 9 C -0.010 4.010 10 N -0.238 5.238 11 C 0.061 3.939 12 N -0.169 5.169 13 N -0.112 5.112 14 C -0.055 4.055 15 C -0.021 4.021 16 H 0.090 0.910 17 C -0.184 4.184 18 C 0.001 3.999 19 C -0.560 4.560 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.529 5.529 23 Si 0.720 3.280 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.203 1.203 27 N -0.199 5.199 28 C -0.074 4.074 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.144 0.856 33 H 0.163 0.837 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.728 -16.410 -8.103 24.795 hybrid contribution 1.851 -1.181 0.470 2.245 sum -14.877 -17.592 -7.633 24.271 Atomic orbital electron populations 1.20664 0.91148 1.02442 1.01917 1.19687 0.95888 0.92823 1.04375 1.20774 0.92989 0.97682 0.98764 1.20959 0.93840 0.97469 1.03644 1.18048 0.80870 0.94898 0.97537 1.19744 0.93679 0.93374 1.09064 1.20085 0.91246 0.97674 1.00113 1.21021 0.90558 0.96290 1.03731 1.22221 0.98616 0.77937 1.02198 1.42664 1.01254 1.03059 1.76822 1.20534 0.79359 0.89722 1.04270 1.74516 1.19437 0.97990 1.24932 1.74050 0.93518 1.24938 1.18678 1.25449 0.99457 0.78305 1.02267 1.19986 0.81404 1.00406 1.00276 0.91043 1.21685 1.02858 0.99901 0.93965 1.19107 0.96997 0.94314 0.89518 1.21096 0.91725 1.30609 1.12558 0.92393 1.25008 0.97637 0.95797 0.95839 1.69973 1.34057 1.32670 1.16154 0.86660 0.85577 0.78114 0.77643 1.20131 1.21319 1.20336 1.46088 1.05118 1.09239 1.59433 1.22218 0.98606 0.83015 1.03528 0.91639 0.91946 0.91718 0.85614 0.83737 0.86099 0.89185 0.89136 0.90532 0.90438 0.90640 0.95027 0.91980 0.96848 0.94882 0.92843 0.90281 0.89914 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.02 36.01 0.36 -0.40 16 2 C -0.13 -1.28 5.88 -104.59 -0.62 -1.90 16 3 C -0.08 -0.99 9.68 -39.71 -0.38 -1.37 16 4 C -0.14 -2.00 9.62 -39.20 -0.38 -2.38 16 5 C 0.18 2.61 6.65 -83.61 -0.56 2.05 16 6 C -0.15 -1.71 6.23 -104.26 -0.65 -2.36 16 7 C -0.07 -0.72 9.70 -39.61 -0.38 -1.10 16 8 C -0.08 -0.62 6.94 -27.24 -0.19 -0.81 16 9 C 0.11 1.05 5.56 -3.64 -0.02 1.03 16 10 N -0.53 -7.55 3.24 -114.25 -0.37 -7.92 16 11 C 0.41 7.37 8.55 -318.70 -2.73 4.64 16 12 N -0.32 -6.77 10.22 30.34 0.31 -6.46 16 13 N -0.28 -6.22 12.18 32.99 0.40 -5.82 16 14 C 0.21 4.30 6.57 -154.04 -1.01 3.29 16 15 C 0.00 0.01 2.70 -91.77 -0.25 -0.24 16 16 H 0.07 1.32 6.81 -51.93 -0.35 0.96 16 17 C -0.13 -2.38 8.98 37.16 0.33 -2.05 16 18 C 0.04 1.00 4.43 -27.88 -0.12 0.87 16 19 C -0.52 -14.13 8.40 -34.44 -0.29 -14.42 16 20 H 0.06 1.48 7.07 -52.49 -0.37 1.11 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 23 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 N -0.50 -8.37 3.21 -121.43 -0.39 -8.76 16 28 C 0.07 0.77 9.82 59.85 0.59 1.36 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.14 2.42 6.44 -52.49 -0.34 2.08 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.59 6.97 -51.93 -0.36 0.23 16 38 H 0.08 0.63 7.51 -51.93 -0.39 0.24 16 39 H 0.07 1.43 6.96 -51.93 -0.36 1.07 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.03 0.95 8.14 -51.92 -0.42 0.52 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.08 0.67 5.38 -51.93 -0.28 0.39 16 47 H 0.10 1.00 6.99 -51.93 -0.36 0.64 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -34.66 378.05 -12.05 -46.70 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.02 Total: -1.37 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -6.39 Total: -12.21 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.69 Total: -55.00 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.66 -12.05 -46.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121513938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.985 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds