Wall clock time and date at job start Tue Mar 31 2020 14:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38309 * 120.08035 * 2 1 4 4 C 1.37824 * 120.22746 * 180.02562 * 3 2 1 5 5 C 1.39674 * 120.28147 * 359.97438 * 4 3 2 6 6 C 1.38611 * 119.03414 * 0.20489 * 5 4 3 7 7 C 1.38166 * 120.46838 * 0.08833 * 6 5 4 8 8 C 1.51221 * 108.54201 * 180.31349 * 6 5 4 9 9 C 1.53743 * 104.55669 * 359.73457 * 8 6 5 10 10 N 1.39674 * 129.33309 * 180.02562 * 5 4 3 11 11 C 1.38665 * 124.95905 * 359.95769 * 10 5 4 12 12 N 1.31221 * 126.47737 * 354.36915 * 11 10 5 13 13 N 1.28527 * 109.85353 * 179.97438 * 12 11 10 14 14 C 1.30318 * 110.05277 * 359.97438 * 13 12 11 15 15 C 1.50701 * 126.33961 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.46646 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47404 * 300.02531 * 15 14 13 18 18 C 1.52997 * 109.47415 * 60.03074 * 15 14 13 19 19 C 1.50701 * 109.47423 * 174.99648 * 18 15 14 20 20 H 1.07995 * 119.99766 * 359.72464 * 19 18 15 21 21 C 1.37879 * 119.99677 * 180.02562 * 19 18 15 22 22 N 1.31509 * 120.00050 * 359.72162 * 21 19 18 23 23 Si 1.86801 * 119.99303 * 179.72631 * 21 19 18 24 24 H 1.48497 * 109.47301 * 59.99998 * 23 21 19 25 25 H 1.48502 * 109.46768 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47049 * 299.99358 * 23 21 19 27 27 N 1.36486 * 126.47247 * 174.63218 * 11 10 5 28 28 C 1.46502 * 127.13583 * 0.03861 * 27 11 10 29 29 H 1.09003 * 109.46897 * 89.99856 * 1 2 3 30 30 H 1.09000 * 109.46963 * 209.99541 * 1 2 3 31 31 H 1.09001 * 109.47140 * 329.99727 * 1 2 3 32 32 H 1.07995 * 119.88445 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.86314 * 180.02562 * 4 3 2 34 34 H 1.07996 * 119.92467 * 180.29050 * 7 6 5 35 35 H 1.09005 * 110.42034 * 240.96826 * 8 6 5 36 36 H 1.08995 * 110.41695 * 118.50793 * 8 6 5 37 37 H 1.08998 * 110.30255 * 241.06840 * 9 8 6 38 38 H 1.09001 * 110.29652 * 118.92343 * 9 8 6 39 39 H 1.09004 * 109.47029 * 180.02562 * 17 15 14 40 40 H 1.08996 * 109.47437 * 300.00617 * 17 15 14 41 41 H 1.09002 * 109.47153 * 60.00023 * 17 15 14 42 42 H 1.09003 * 109.47256 * 54.99517 * 18 15 14 43 43 H 1.09009 * 109.46981 * 294.99884 * 18 15 14 44 44 H 0.97005 * 119.99370 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.46895 * 275.89833 * 28 27 11 46 46 H 1.09000 * 109.46690 * 35.89526 * 28 27 11 47 47 H 1.08995 * 109.46837 * 155.89648 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1968 0.0000 4 6 3.5785 1.2004 -0.0005 5 6 4.2859 -0.0040 -0.0005 6 6 3.5816 -1.1979 -0.0043 7 6 2.1999 -1.1962 -0.0099 8 6 4.5721 -2.3405 0.0044 9 6 5.9496 -1.6578 0.0069 10 7 5.6658 -0.2202 -0.0005 11 6 6.6266 0.7796 -0.0014 12 7 6.4101 2.0696 -0.1058 13 7 7.5273 2.7040 -0.0698 14 6 8.5146 1.8633 0.0593 15 6 9.9788 2.2109 0.1395 16 1 10.5639 1.2972 0.2445 17 6 10.4001 2.9424 -1.1365 18 6 10.2230 3.1146 1.3497 19 6 11.7017 3.3621 1.5017 20 1 12.3981 2.9155 0.8075 21 6 12.1659 4.1536 2.5309 22 7 11.3179 4.6970 3.3764 23 14 13.9995 4.4541 2.7238 24 1 14.5247 5.1117 1.5003 25 1 14.2363 5.3323 3.8977 26 1 14.6949 3.1578 2.9265 27 7 7.9767 0.6074 0.1013 28 6 8.6992 -0.6603 0.2328 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6597 2.1318 0.0004 33 1 4.1138 2.1383 -0.0001 34 1 1.6600 -2.1315 -0.0081 35 1 4.4532 -2.9537 -0.8890 36 1 4.4461 -2.9461 0.9018 37 1 6.5116 -1.9367 -0.8845 38 1 6.5044 -1.9291 0.9050 39 1 11.4592 3.1934 -1.0786 40 1 10.2261 2.2987 -1.9987 41 1 9.8150 3.8561 -1.2415 42 1 9.8415 2.6295 2.2482 43 1 9.7087 4.0645 1.2035 44 1 11.6445 5.2542 4.1002 45 1 8.7178 -0.9608 1.2804 46 1 8.1969 -1.4275 -0.3564 47 1 9.7202 -0.5356 -0.1277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121513938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:46 Heat of formation + Delta-G solvation = 93.585639 kcal Electronic energy + Delta-G solvation = -27282.112517 eV Core-core repulsion = 23658.347726 eV Total energy + Delta-G solvation = -3623.764791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -44.03857 -41.51058 -38.21766 -37.13378 -35.90476 -34.45490 -33.68589 -32.57176 -30.63159 -29.66867 -28.79415 -28.46467 -27.41273 -25.94481 -24.00947 -23.87267 -23.73509 -21.79989 -21.52451 -20.57775 -18.66218 -18.53298 -17.82008 -17.50081 -16.97857 -16.59198 -16.37899 -15.91043 -15.61891 -15.44465 -14.95653 -14.58928 -14.56176 -14.40174 -14.34357 -14.16832 -13.80671 -13.68637 -13.39434 -13.12087 -13.07512 -12.93808 -12.83817 -12.77881 -12.64090 -12.48266 -12.30420 -12.27926 -11.95115 -11.73370 -11.65599 -11.44253 -11.28840 -11.14632 -10.98713 -10.54410 -9.91280 -9.71908 -8.28681 -8.15900 -6.28732 0.27800 0.44579 0.83414 1.02017 1.43452 1.47327 1.54607 1.87745 1.93350 2.43762 2.81052 3.17402 3.33883 3.42087 3.52839 3.64059 3.88292 3.97805 4.04241 4.10609 4.16191 4.20923 4.28737 4.40332 4.42307 4.48752 4.52312 4.54779 4.59532 4.75212 4.85216 4.89194 4.92849 4.95228 4.99082 5.08673 5.15294 5.16355 5.23250 5.35536 5.39764 5.44690 5.45719 5.63958 5.69875 5.72456 5.78841 5.83110 6.17390 6.19630 6.32160 6.87241 7.40613 7.78273 8.96013 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.002580 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.268273 B =10848.693663 C =11365.591268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.121 4.121 3 C -0.097 4.097 4 C -0.169 4.169 5 C 0.143 3.857 6 C -0.145 4.145 7 C -0.072 4.072 8 C -0.070 4.070 9 C 0.100 3.900 10 N -0.530 5.530 11 C 0.426 3.574 12 N -0.370 5.370 13 N -0.322 5.322 14 C 0.198 3.802 15 C 0.012 3.988 16 H 0.100 0.900 17 C -0.118 4.118 18 C 0.050 3.950 19 C -0.528 4.528 20 H 0.079 0.921 21 C -0.005 4.005 22 N -0.939 5.939 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.291 1.291 26 H -0.260 1.260 27 N -0.495 5.495 28 C 0.056 3.944 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.107 0.893 34 H 0.158 0.842 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.037 0.963 42 H -0.023 1.023 43 H -0.013 1.013 44 H 0.261 0.739 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.058 -22.340 -9.174 29.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.122 4.122 3 C -0.115 4.115 4 C -0.191 4.191 5 C 0.046 3.954 6 C -0.149 4.149 7 C -0.090 4.090 8 C -0.107 4.107 9 C -0.021 4.021 10 N -0.242 5.242 11 C 0.071 3.929 12 N -0.215 5.215 13 N -0.159 5.159 14 C -0.071 4.071 15 C -0.009 4.009 16 H 0.118 0.882 17 C -0.176 4.176 18 C 0.012 3.988 19 C -0.566 4.566 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.579 5.579 23 Si 0.793 3.207 24 H -0.189 1.189 25 H -0.217 1.217 26 H -0.185 1.185 27 N -0.193 5.193 28 C -0.084 4.084 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.126 0.874 34 H 0.176 0.824 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.056 0.944 42 H -0.005 1.005 43 H 0.006 0.994 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.137 0.863 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.650 -20.988 -9.180 28.319 hybrid contribution 1.599 0.147 0.808 1.798 sum -15.051 -20.841 -8.372 27.036 Atomic orbital electron populations 1.20732 0.88712 1.03588 1.02985 1.20109 0.97639 0.92239 1.02250 1.20939 0.92064 0.99253 0.99293 1.20918 0.95182 0.96800 1.06200 1.18406 0.81218 0.95903 0.99843 1.20208 0.94496 0.93339 1.06859 1.20548 0.90968 0.98908 0.98588 1.21167 0.88037 0.95205 1.06282 1.22687 1.00404 0.75033 1.03937 1.43088 1.00712 1.04055 1.76374 1.20775 0.80469 0.89796 1.01882 1.74408 1.19229 1.00155 1.27747 1.73924 0.94729 1.27143 1.20073 1.25210 0.98907 0.79767 1.03256 1.19750 0.82350 1.00413 0.98345 0.88216 1.21596 1.02236 0.99381 0.94396 1.18851 0.96236 0.93067 0.90639 1.21549 0.92405 1.30067 1.12555 0.90278 1.26062 1.03049 0.95563 0.95523 1.70162 1.36741 1.33886 1.17117 0.85443 0.79042 0.78558 0.77654 1.18878 1.21734 1.18480 1.46200 1.04749 1.09781 1.58611 1.22708 0.99244 0.81346 1.05138 0.90467 0.89994 0.91459 0.84920 0.87441 0.82410 0.86327 0.86669 0.88442 0.88973 0.90506 0.91866 0.94358 1.00480 0.99420 0.92997 0.89238 0.86338 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.02 71.24 0.71 -0.50 16 2 C -0.12 -2.25 5.88 -19.85 -0.12 -2.37 16 3 C -0.10 -2.38 9.68 22.19 0.21 -2.16 16 4 C -0.17 -5.34 9.62 22.52 0.22 -5.12 16 5 C 0.14 4.07 6.65 38.33 0.25 4.33 16 6 C -0.14 -2.84 6.23 -19.63 -0.12 -2.97 16 7 C -0.07 -1.18 9.70 22.25 0.22 -0.97 16 8 C -0.07 -0.79 6.94 30.26 0.21 -0.58 16 9 C 0.10 1.54 5.56 86.62 0.48 2.02 16 10 N -0.53 -14.96 3.24 -515.37 -1.67 -16.63 16 11 C 0.43 15.62 8.55 260.05 2.22 17.85 16 12 N -0.37 -16.75 10.22 -57.93 -0.59 -17.35 16 13 N -0.32 -15.71 12.18 -49.55 -0.60 -16.31 16 14 C 0.20 8.34 6.57 137.65 0.91 9.25 16 15 C 0.01 0.51 2.70 -11.54 -0.03 0.48 16 16 H 0.10 3.54 6.81 -2.38 -0.02 3.52 16 17 C -0.12 -4.48 8.98 71.98 0.65 -3.84 16 18 C 0.05 2.74 4.43 29.85 0.13 2.87 16 19 C -0.53 -29.01 8.40 25.60 0.22 -28.79 16 20 H 0.08 3.93 7.07 -2.91 -0.02 3.91 16 21 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 22 N -0.94 -58.86 13.29 21.45 0.28 -58.57 16 23 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 24 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 27 N -0.50 -16.57 3.21 -538.09 -1.73 -18.30 16 28 C 0.06 1.11 9.82 127.77 1.25 2.36 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.67 8.09 -2.39 -0.02 0.65 16 31 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 32 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 33 H 0.11 4.13 6.44 -2.91 -0.02 4.11 16 34 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 35 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 1.09 6.97 -2.39 -0.02 1.07 16 38 H 0.09 1.16 7.51 -2.39 -0.02 1.14 16 39 H 0.08 2.86 6.96 -2.38 -0.02 2.84 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 43 H -0.01 -0.80 8.14 -2.38 -0.02 -0.81 16 44 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 45 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.12 1.46 5.38 -2.39 -0.01 1.44 16 47 H 0.11 1.93 6.99 -2.39 -0.02 1.91 16 Total: -1.00 -83.88 378.05 6.57 -77.31 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.97 Total: 12.14 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 7.88 Total: -7.94 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -4.31 Total: -127.16 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -83.88 6.57 -77.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121513938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.896 kcal (2) G-P(sol) polarization free energy of solvation -83.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds