Wall clock time and date at job start Tue Mar 31 2020 15:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99525 * 2 1 4 4 N 1.46500 * 109.46787 * 126.64702 * 3 2 1 5 5 C 1.36483 * 127.14003 * 85.61266 * 4 3 2 6 6 N 1.38668 * 126.47235 * 359.97074 * 5 4 3 7 7 C 1.46505 * 120.00060 * 355.39212 * 6 5 4 8 8 C 1.39758 * 120.00167 * 175.38635 * 6 5 4 9 9 C 1.38917 * 120.07578 * 6.32432 * 8 6 5 10 10 C 1.38096 * 119.92620 * 179.74026 * 9 8 6 11 11 C 1.38296 * 120.07495 * 0.53605 * 10 9 8 12 12 C 1.38291 * 120.14979 * 359.71673 * 11 10 9 13 13 C 1.38102 * 120.07460 * 0.02562 * 12 11 10 14 14 N 1.31219 * 107.05538 * 180.25564 * 5 4 3 15 15 N 1.28530 * 109.85072 * 359.73667 * 14 5 4 16 16 C 1.30317 * 110.05338 * 0.02562 * 15 14 5 17 17 C 1.50700 * 126.34514 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47042 * 237.20678 * 17 16 15 19 19 C 1.52995 * 109.47326 * 117.20180 * 17 16 15 20 20 C 1.50701 * 109.46995 * 357.20207 * 17 16 15 21 21 H 1.08007 * 120.00297 * 245.34167 * 20 17 16 22 22 C 1.37877 * 119.99968 * 65.33873 * 20 17 16 23 23 N 1.31515 * 120.00087 * 177.64971 * 22 20 17 24 24 Si 1.86800 * 120.00103 * 357.92369 * 22 20 17 25 25 H 1.48497 * 109.47150 * 95.32091 * 24 22 20 26 26 H 1.48498 * 109.47137 * 215.32105 * 24 22 20 27 27 H 1.48505 * 109.47099 * 335.32361 * 24 22 20 28 28 H 1.08003 * 119.99600 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00464 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.00464 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47223 * 6.64576 * 3 2 1 32 32 H 1.08992 * 109.46928 * 246.64038 * 3 2 1 33 33 H 1.08993 * 109.47405 * 85.53691 * 7 6 5 34 34 H 1.09002 * 109.47317 * 205.54270 * 7 6 5 35 35 H 1.09001 * 109.46810 * 325.53971 * 7 6 5 36 36 H 1.08002 * 120.03280 * 359.97401 * 9 8 6 37 37 H 1.08002 * 119.96606 * 180.23043 * 10 9 8 38 38 H 1.07998 * 119.92263 * 179.70055 * 11 10 9 39 39 H 1.07996 * 119.96230 * 180.02562 * 12 11 10 40 40 H 1.07996 * 120.03741 * 179.97438 * 13 12 11 41 41 H 1.09003 * 109.47089 * 183.83555 * 18 17 16 42 42 H 1.09001 * 109.47193 * 303.82886 * 18 17 16 43 43 H 1.08992 * 109.47489 * 63.83460 * 18 17 16 44 44 H 1.08999 * 109.47638 * 305.58684 * 19 17 16 45 45 H 1.08998 * 109.46978 * 65.58908 * 19 17 16 46 46 H 1.09002 * 109.47116 * 185.59074 * 19 17 16 47 47 H 0.97007 * 120.00171 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0215 1.3159 1.1082 5 6 4.2894 0.8106 1.1063 6 7 4.9246 0.1819 0.0460 7 6 4.1917 -0.0816 -1.1948 8 6 6.2640 -0.2001 0.1610 9 6 6.9227 -0.0714 1.3773 10 6 8.2446 -0.4550 1.4889 11 6 8.9160 -0.9563 0.3886 12 6 8.2648 -1.0809 -0.8250 13 6 6.9413 -0.7042 -0.9422 14 7 4.7915 1.0264 2.2993 15 7 3.9277 1.6323 3.0333 16 6 2.8322 1.8368 2.3578 17 6 1.5857 2.5170 2.8623 18 6 0.3926 1.5707 2.7137 19 6 1.3332 3.7878 2.0486 20 6 1.7630 2.8775 4.3148 21 1 1.1479 2.4062 5.0672 22 6 2.7105 3.8089 4.6832 23 7 2.8338 4.1577 5.9452 24 14 3.8138 4.5812 3.3887 25 1 3.2336 5.8767 2.9527 26 1 5.1639 4.8116 3.9626 27 1 3.9211 3.6691 2.2217 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3610 2.1302 0.1189 32 1 2.5979 1.4161 -0.9434 33 1 4.2360 0.7981 -1.8369 34 1 4.6420 -0.9303 -1.7097 35 1 3.1515 -0.3087 -0.9612 36 1 6.4003 0.3246 2.2357 37 1 8.7562 -0.3586 2.4351 38 1 9.9512 -1.2510 0.4774 39 1 8.7919 -1.4732 -1.6821 40 1 6.4336 -0.8014 -1.8904 41 1 -0.5195 2.0860 3.0148 42 1 0.3057 1.2561 1.6737 43 1 0.5415 0.6960 3.3467 44 1 2.2222 4.4179 2.0734 45 1 1.1068 3.5194 1.0167 46 1 0.4906 4.3314 2.4759 47 1 3.5002 4.8133 6.2044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121561061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:57 Heat of formation + Delta-G solvation = 194.546320 kcal Electronic energy + Delta-G solvation = -29210.868574 eV Core-core repulsion = 25591.481767 eV Total energy + Delta-G solvation = -3619.386807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.51006 -39.42763 -36.93395 -36.52403 -35.01927 -32.59818 -31.67306 -31.04477 -29.74534 -29.05193 -27.29950 -26.67426 -25.62470 -25.05843 -22.79232 -22.26822 -21.58542 -20.86974 -19.80847 -19.28247 -17.48884 -17.09968 -16.41650 -16.10074 -15.73786 -15.51158 -15.18814 -14.81293 -14.47094 -14.11797 -13.94218 -13.88230 -13.73742 -13.38728 -12.94869 -12.82654 -12.56780 -12.42669 -12.27335 -11.86672 -11.63120 -11.56178 -11.50648 -11.09523 -11.00613 -10.78384 -10.53072 -10.33007 -10.17514 -9.92634 -9.63631 -9.49255 -9.43013 -9.26232 -9.06285 -8.75509 -8.51285 -8.29274 -6.98199 -6.04549 -4.08669 1.52170 1.63251 1.80642 2.40786 2.64503 3.26025 3.39253 3.49131 3.58747 3.80881 4.05867 4.48169 4.52457 4.62864 4.69081 4.87465 4.98524 5.05468 5.08468 5.11866 5.21857 5.28086 5.42888 5.44469 5.53528 5.58726 5.66677 5.72927 5.83803 5.93744 6.05554 6.10347 6.20172 6.22850 6.25126 6.30063 6.45513 6.51237 6.51894 6.58758 6.60514 6.65135 6.79636 6.96958 7.08761 7.10504 7.43614 7.47742 7.63043 7.79511 8.48095 8.95214 9.59111 9.67199 11.06992 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.005411 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.201788 B = 5172.956522 C = 6772.929308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.188 4.188 3 C 0.121 3.879 4 N -0.496 5.496 5 C 0.393 3.607 6 N -0.528 5.528 7 C 0.066 3.934 8 C 0.193 3.807 9 C -0.173 4.173 10 C -0.086 4.086 11 C -0.165 4.165 12 C -0.094 4.094 13 C -0.181 4.181 14 N -0.332 5.332 15 N -0.263 5.263 16 C 0.232 3.768 17 C 0.117 3.883 18 C -0.135 4.135 19 C -0.145 4.145 20 C -0.502 4.502 21 H 0.082 0.918 22 C 0.099 3.901 23 N -0.886 5.886 24 Si 0.908 3.092 25 H -0.302 1.302 26 H -0.300 1.300 27 H -0.265 1.265 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.185 0.815 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.043 0.957 45 H 0.030 0.970 46 H 0.071 0.929 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 -9.461 -18.740 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.207 4.207 3 C -0.001 4.001 4 N -0.194 5.194 5 C 0.040 3.960 6 N -0.238 5.238 7 C -0.077 4.077 8 C 0.096 3.904 9 C -0.195 4.195 10 C -0.105 4.105 11 C -0.185 4.185 12 C -0.113 4.113 13 C -0.203 4.203 14 N -0.177 5.177 15 N -0.097 5.097 16 C -0.035 4.035 17 C 0.113 3.887 18 C -0.193 4.193 19 C -0.203 4.203 20 C -0.539 4.539 21 H 0.100 0.900 22 C -0.106 4.106 23 N -0.522 5.522 24 Si 0.742 3.258 25 H -0.231 1.231 26 H -0.228 1.228 27 H -0.191 1.191 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.201 0.799 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.490 -9.320 -17.467 19.854 hybrid contribution 0.013 0.348 -1.886 1.918 sum 1.502 -8.972 -19.354 21.385 Atomic orbital electron populations 1.23968 0.95442 1.02727 0.96577 1.23135 0.96523 0.97853 1.03187 1.21288 0.92002 0.97778 0.89067 1.46502 1.11144 1.47972 1.13794 1.21026 0.83954 0.99966 0.91101 1.42541 1.08928 1.60686 1.11684 1.22400 0.98236 1.01757 0.85269 1.17714 0.81705 0.96164 0.94814 1.22538 0.95645 1.02059 0.99225 1.21075 0.94059 0.96959 0.98430 1.21024 0.99929 1.04002 0.93513 1.20753 0.93681 0.99383 0.97475 1.20600 0.95550 1.07174 0.97026 1.74096 1.24146 1.21121 0.98310 1.74129 0.98487 1.13856 1.23239 1.26414 1.00119 0.98238 0.78684 1.17265 0.84590 0.90076 0.96721 1.22030 0.97940 0.99343 1.00016 1.22344 1.01736 0.99071 0.97152 1.20523 1.21262 1.23787 0.88372 0.90040 1.24888 0.95446 0.95286 0.94973 1.69873 1.34237 1.31871 1.16215 0.86766 0.79663 0.77020 0.82326 1.23145 1.22803 1.19112 0.87584 0.87465 0.86710 0.87300 0.88651 0.92451 0.89778 0.89487 0.79874 0.86013 0.86674 0.86365 0.86325 0.92206 0.93708 0.93114 0.93824 0.95170 0.91034 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 12.36 29.01 0.36 -1.00 16 2 C -0.19 -2.04 7.90 -36.02 -0.28 -2.32 16 3 C 0.12 1.57 4.84 -5.19 -0.03 1.55 16 4 N -0.50 -9.16 2.79 -115.34 -0.32 -9.49 16 5 C 0.39 7.72 8.23 -318.70 -2.62 5.10 16 6 N -0.53 -8.34 3.20 -122.19 -0.39 -8.73 16 7 C 0.07 0.70 8.46 59.85 0.51 1.20 16 8 C 0.19 3.08 6.51 -83.74 -0.55 2.54 16 9 C -0.17 -3.03 9.19 -39.38 -0.36 -3.40 16 10 C -0.09 -1.28 10.04 -39.61 -0.40 -1.67 16 11 C -0.16 -2.07 10.04 -39.54 -0.40 -2.47 16 12 C -0.09 -1.11 10.04 -39.61 -0.40 -1.51 16 13 C -0.18 -2.32 9.16 -39.38 -0.36 -2.68 16 14 N -0.33 -7.78 8.47 30.34 0.26 -7.53 16 15 N -0.26 -6.79 8.66 32.99 0.29 -6.50 16 16 C 0.23 5.26 3.98 -154.04 -0.61 4.65 16 17 C 0.12 2.59 0.49 -156.81 -0.08 2.51 16 18 C -0.14 -2.46 8.31 37.16 0.31 -2.15 16 19 C -0.15 -2.91 7.68 37.16 0.29 -2.62 16 20 C -0.50 -13.78 8.31 -34.44 -0.29 -14.07 16 21 H 0.08 2.41 7.99 -52.48 -0.42 1.99 16 22 C 0.10 2.89 5.20 -17.82 -0.09 2.79 16 23 N -0.89 -27.43 13.96 55.43 0.77 -26.66 16 24 Si 0.91 24.24 22.16 -169.99 -3.77 20.47 16 25 H -0.30 -7.76 7.07 56.52 0.40 -7.36 16 26 H -0.30 -8.45 7.11 56.52 0.40 -8.05 16 27 H -0.27 -6.91 4.37 56.52 0.25 -6.66 16 28 H 0.11 0.80 8.06 -52.48 -0.42 0.38 16 29 H 0.11 0.90 7.25 -52.49 -0.38 0.52 16 30 H 0.12 1.25 6.92 -52.49 -0.36 0.88 16 31 H 0.11 1.37 4.30 -51.93 -0.22 1.15 16 32 H 0.10 1.01 5.49 -51.93 -0.29 0.73 16 33 H 0.06 0.54 7.58 -51.93 -0.39 0.14 16 34 H 0.08 0.71 6.25 -51.93 -0.32 0.38 16 35 H 0.09 0.85 3.22 -51.93 -0.17 0.68 16 36 H 0.19 3.80 4.50 -66.56 -0.30 3.50 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.12 1.20 6.24 -52.49 -0.33 0.87 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.04 0.65 2.18 -51.93 -0.11 0.54 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.04 0.97 2.98 -51.93 -0.15 0.82 16 45 H 0.03 0.48 5.56 -51.93 -0.29 0.19 16 46 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 47 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -34.99 343.93 -8.97 -43.97 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.99 Total: 2.82 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -5.00 Total: -13.54 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.60 Total: -58.90 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -3.77 Total: 20.47 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.99 -8.97 -43.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121561061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.513 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 203.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 194.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds