Wall clock time and date at job start Tue Mar 31 2020 15:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99525 * 2 1 4 4 N 1.46500 * 109.46787 * 126.64702 * 3 2 1 5 5 C 1.36483 * 127.14003 * 85.61266 * 4 3 2 6 6 N 1.38668 * 126.47235 * 359.97074 * 5 4 3 7 7 C 1.46505 * 120.00060 * 355.39212 * 6 5 4 8 8 C 1.39758 * 120.00167 * 175.38635 * 6 5 4 9 9 C 1.38917 * 120.07578 * 6.32432 * 8 6 5 10 10 C 1.38096 * 119.92620 * 179.74026 * 9 8 6 11 11 C 1.38296 * 120.07495 * 0.53605 * 10 9 8 12 12 C 1.38291 * 120.14979 * 359.71673 * 11 10 9 13 13 C 1.38102 * 120.07460 * 0.02562 * 12 11 10 14 14 N 1.31219 * 107.05538 * 180.25564 * 5 4 3 15 15 N 1.28530 * 109.85072 * 359.73667 * 14 5 4 16 16 C 1.30317 * 110.05338 * 0.02562 * 15 14 5 17 17 C 1.50700 * 126.34514 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47042 * 237.20678 * 17 16 15 19 19 C 1.52995 * 109.47326 * 117.20180 * 17 16 15 20 20 C 1.50701 * 109.46995 * 357.20207 * 17 16 15 21 21 H 1.08007 * 120.00297 * 245.34167 * 20 17 16 22 22 C 1.37877 * 119.99968 * 65.33873 * 20 17 16 23 23 N 1.31515 * 120.00087 * 177.64971 * 22 20 17 24 24 Si 1.86800 * 120.00103 * 357.92369 * 22 20 17 25 25 H 1.48497 * 109.47150 * 95.32091 * 24 22 20 26 26 H 1.48498 * 109.47137 * 215.32105 * 24 22 20 27 27 H 1.48505 * 109.47099 * 335.32361 * 24 22 20 28 28 H 1.08003 * 119.99600 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00464 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.00464 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47223 * 6.64576 * 3 2 1 32 32 H 1.08992 * 109.46928 * 246.64038 * 3 2 1 33 33 H 1.08993 * 109.47405 * 85.53691 * 7 6 5 34 34 H 1.09002 * 109.47317 * 205.54270 * 7 6 5 35 35 H 1.09001 * 109.46810 * 325.53971 * 7 6 5 36 36 H 1.08002 * 120.03280 * 359.97401 * 9 8 6 37 37 H 1.08002 * 119.96606 * 180.23043 * 10 9 8 38 38 H 1.07998 * 119.92263 * 179.70055 * 11 10 9 39 39 H 1.07996 * 119.96230 * 180.02562 * 12 11 10 40 40 H 1.07996 * 120.03741 * 179.97438 * 13 12 11 41 41 H 1.09003 * 109.47089 * 183.83555 * 18 17 16 42 42 H 1.09001 * 109.47193 * 303.82886 * 18 17 16 43 43 H 1.08992 * 109.47489 * 63.83460 * 18 17 16 44 44 H 1.08999 * 109.47638 * 305.58684 * 19 17 16 45 45 H 1.08998 * 109.46978 * 65.58908 * 19 17 16 46 46 H 1.09002 * 109.47116 * 185.59074 * 19 17 16 47 47 H 0.97007 * 120.00171 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0215 1.3159 1.1082 5 6 4.2894 0.8106 1.1063 6 7 4.9246 0.1819 0.0460 7 6 4.1917 -0.0816 -1.1948 8 6 6.2640 -0.2001 0.1610 9 6 6.9227 -0.0714 1.3773 10 6 8.2446 -0.4550 1.4889 11 6 8.9160 -0.9563 0.3886 12 6 8.2648 -1.0809 -0.8250 13 6 6.9413 -0.7042 -0.9422 14 7 4.7915 1.0264 2.2993 15 7 3.9277 1.6323 3.0333 16 6 2.8322 1.8368 2.3578 17 6 1.5857 2.5170 2.8623 18 6 0.3926 1.5707 2.7137 19 6 1.3332 3.7878 2.0486 20 6 1.7630 2.8775 4.3148 21 1 1.1479 2.4062 5.0672 22 6 2.7105 3.8089 4.6832 23 7 2.8338 4.1577 5.9452 24 14 3.8138 4.5812 3.3887 25 1 3.2336 5.8767 2.9527 26 1 5.1639 4.8116 3.9626 27 1 3.9211 3.6691 2.2217 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3610 2.1302 0.1189 32 1 2.5979 1.4161 -0.9434 33 1 4.2360 0.7981 -1.8369 34 1 4.6420 -0.9303 -1.7097 35 1 3.1515 -0.3087 -0.9612 36 1 6.4003 0.3246 2.2357 37 1 8.7562 -0.3586 2.4351 38 1 9.9512 -1.2510 0.4774 39 1 8.7919 -1.4732 -1.6821 40 1 6.4336 -0.8014 -1.8904 41 1 -0.5195 2.0860 3.0148 42 1 0.3057 1.2561 1.6737 43 1 0.5415 0.6960 3.3467 44 1 2.2222 4.4179 2.0734 45 1 1.1068 3.5194 1.0167 46 1 0.4906 4.3314 2.4759 47 1 3.5002 4.8133 6.2044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121561061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:56 Heat of formation + Delta-G solvation = 174.117855 kcal Electronic energy + Delta-G solvation = -29211.754419 eV Core-core repulsion = 25591.481767 eV Total energy + Delta-G solvation = -3620.272652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.03203 -40.53500 -38.16989 -37.90984 -36.36598 -33.89472 -33.65552 -32.15787 -30.82525 -30.39127 -28.53313 -28.12931 -27.11141 -26.63169 -24.04503 -23.72666 -22.80519 -21.93994 -20.99018 -20.81078 -19.04726 -18.32061 -17.98804 -17.50114 -17.02505 -16.74496 -16.55043 -16.10137 -15.60449 -15.53464 -15.15683 -15.07815 -14.88780 -14.84140 -14.45648 -14.36325 -13.99533 -13.63519 -13.45234 -13.22683 -12.91948 -12.77779 -12.60874 -12.50716 -12.25675 -12.22090 -12.09143 -12.01374 -11.79450 -11.51516 -11.16434 -11.15184 -10.92585 -10.74630 -10.68106 -10.38759 -9.84703 -9.71795 -8.33231 -8.29068 -6.34417 0.41228 0.54969 0.83430 1.12144 1.18993 1.33377 1.37555 1.46565 2.12160 2.17521 2.35566 2.98200 3.11622 3.47879 3.67657 3.78374 3.84340 3.97550 4.05779 4.13026 4.22814 4.28271 4.34346 4.38697 4.42065 4.44239 4.56356 4.59345 4.63450 4.70150 4.72679 4.80864 4.91660 4.94778 5.00542 5.03109 5.10526 5.33840 5.39802 5.41622 5.51224 5.55331 5.57392 5.61328 5.66347 5.73748 5.92009 6.01411 6.26966 6.35676 6.41050 6.72586 7.36799 8.07726 8.84724 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.005411 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.201788 B = 5172.956522 C = 6772.929308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.207 4.207 3 C 0.109 3.891 4 N -0.488 5.488 5 C 0.407 3.593 6 N -0.526 5.526 7 C 0.054 3.946 8 C 0.168 3.832 9 C -0.214 4.214 10 C -0.102 4.102 11 C -0.161 4.161 12 C -0.087 4.087 13 C -0.169 4.169 14 N -0.377 5.377 15 N -0.325 5.325 16 C 0.221 3.779 17 C 0.111 3.889 18 C -0.127 4.127 19 C -0.144 4.144 20 C -0.493 4.493 21 H 0.045 0.955 22 C 0.053 3.947 23 N -0.938 5.938 24 Si 0.961 3.039 25 H -0.286 1.286 26 H -0.334 1.334 27 H -0.255 1.255 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.147 0.853 37 H 0.122 0.878 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.029 0.971 44 H 0.020 0.980 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 -11.157 -24.573 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.226 4.226 3 C -0.011 4.011 4 N -0.186 5.186 5 C 0.052 3.948 6 N -0.238 5.238 7 C -0.086 4.086 8 C 0.072 3.928 9 C -0.236 4.236 10 C -0.121 4.121 11 C -0.180 4.180 12 C -0.105 4.105 13 C -0.191 4.191 14 N -0.221 5.221 15 N -0.159 5.159 16 C -0.048 4.048 17 C 0.108 3.892 18 C -0.185 4.185 19 C -0.201 4.201 20 C -0.530 4.530 21 H 0.064 0.936 22 C -0.146 4.146 23 N -0.578 5.578 24 Si 0.796 3.204 25 H -0.215 1.215 26 H -0.264 1.264 27 H -0.180 1.180 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.164 0.836 37 H 0.140 0.860 38 H 0.161 0.839 39 H 0.177 0.823 40 H 0.172 0.828 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.048 0.952 44 H 0.038 0.962 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.797 -11.042 -23.382 25.870 hybrid contribution 0.253 0.661 -0.181 0.731 sum 1.050 -10.381 -23.563 25.770 Atomic orbital electron populations 1.24274 0.94856 1.04320 0.93488 1.22995 0.97032 0.96731 1.05823 1.21784 0.91695 0.99316 0.88301 1.46489 1.11523 1.46918 1.13638 1.21271 0.84085 0.98333 0.91141 1.42915 1.09149 1.59833 1.11862 1.22801 0.98590 1.03792 0.83406 1.17988 0.82053 0.97491 0.95277 1.22389 0.97135 1.04675 0.99411 1.21203 0.93445 0.97699 0.99767 1.21380 1.01143 1.02481 0.93000 1.21285 0.93385 0.97640 0.98235 1.20997 0.95864 1.05131 0.97086 1.74139 1.24668 1.23022 1.00285 1.74004 1.00245 1.15877 1.25820 1.25935 0.99409 0.99014 0.80465 1.17302 0.86050 0.92189 0.93686 1.21991 0.96566 0.97715 1.02203 1.22262 1.00896 0.97213 0.99748 1.20841 1.19235 1.21852 0.91111 0.93639 1.25459 0.96801 0.96437 0.95930 1.69998 1.35807 1.33875 1.18110 0.85964 0.76541 0.76996 0.80936 1.21490 1.26438 1.17982 0.85732 0.86168 0.86811 0.86584 0.85872 0.90501 0.86986 0.88548 0.83631 0.86043 0.83861 0.82260 0.82780 0.90909 0.89741 0.95209 0.96164 0.90315 0.90229 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 12.36 67.78 0.84 -0.92 16 2 C -0.21 -3.65 7.90 25.65 0.20 -3.45 16 3 C 0.11 2.41 4.84 85.63 0.41 2.82 16 4 N -0.49 -17.30 2.79 -518.81 -1.45 -18.75 16 5 C 0.41 15.91 8.23 260.05 2.14 18.05 16 6 N -0.53 -15.63 3.20 -540.50 -1.73 -17.36 16 7 C 0.05 0.91 8.46 127.77 1.08 1.99 16 8 C 0.17 5.14 6.51 38.20 0.25 5.39 16 9 C -0.21 -7.78 9.19 22.40 0.21 -7.58 16 10 C -0.10 -3.06 10.04 22.25 0.22 -2.84 16 11 C -0.16 -3.61 10.04 22.30 0.22 -3.39 16 12 C -0.09 -1.67 10.04 22.25 0.22 -1.44 16 13 C -0.17 -3.64 9.16 22.40 0.21 -3.43 16 14 N -0.38 -18.52 8.47 -57.93 -0.49 -19.01 16 15 N -0.33 -17.57 8.66 -49.55 -0.43 -18.00 16 16 C 0.22 10.06 3.98 137.65 0.55 10.61 16 17 C 0.11 4.88 0.49 -53.67 -0.03 4.86 16 18 C -0.13 -4.40 8.31 71.98 0.60 -3.80 16 19 C -0.14 -5.43 7.68 71.98 0.55 -4.88 16 20 C -0.49 -28.16 8.31 25.60 0.21 -27.94 16 21 H 0.05 2.85 7.99 -2.91 -0.02 2.83 16 22 C 0.05 3.25 5.20 84.65 0.44 3.69 16 23 N -0.94 -61.77 13.96 21.45 0.30 -61.47 16 24 Si 0.96 52.72 22.16 68.60 1.52 54.24 16 25 H -0.29 -14.58 7.07 99.48 0.70 -13.88 16 26 H -0.33 -19.88 7.11 99.48 0.71 -19.17 16 27 H -0.25 -13.44 4.37 99.48 0.43 -13.00 16 28 H 0.12 1.26 8.06 -2.91 -0.02 1.24 16 29 H 0.12 1.33 7.25 -2.91 -0.02 1.31 16 30 H 0.11 2.07 6.92 -2.91 -0.02 2.05 16 31 H 0.12 2.35 4.30 -2.39 -0.01 2.34 16 32 H 0.12 2.02 5.49 -2.39 -0.01 2.01 16 33 H 0.08 1.03 7.58 -2.39 -0.02 1.02 16 34 H 0.11 1.27 6.25 -2.39 -0.01 1.25 16 35 H 0.10 1.47 3.22 -2.39 -0.01 1.46 16 36 H 0.15 6.57 4.50 -21.12 -0.10 6.47 16 37 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 38 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 40 H 0.15 2.16 6.24 -2.91 -0.02 2.14 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 42 H 0.08 2.18 2.18 -2.39 -0.01 2.17 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.02 0.86 2.98 -2.39 -0.01 0.85 16 45 H 0.08 2.18 5.56 -2.39 -0.01 2.16 16 46 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 47 H 0.26 16.49 8.31 -92.70 -0.77 15.72 16 Total: -1.00 -86.58 343.93 6.71 -79.87 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.66 Total: 12.74 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 8.33 Total: -12.26 kcal Atomic # 7 Polarization: -130.79 SS G_CDS: -3.80 Total: -134.59 kcal Atomic # 14 Polarization: 52.72 SS G_CDS: 1.52 Total: 54.24 kcal Total: -86.58 6.71 -79.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121561061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.985 kcal (2) G-P(sol) polarization free energy of solvation -86.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds