Wall clock time and date at job start Tue Mar 31 2020 14:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47127 * 239.99791 * 3 2 1 5 5 H 1.48495 * 109.47127 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46742 * 119.99962 * 3 2 1 7 7 C 1.37878 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99714 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00395 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47327 * 173.99631 * 9 7 2 11 11 C 1.46903 * 110.99953 * 178.62709 * 10 9 7 12 12 C 1.50701 * 109.47011 * 199.98395 * 11 10 9 13 13 C 1.38280 * 119.93094 * 84.20386 * 12 11 10 14 14 C 1.38122 * 120.06126 * 180.02562 * 13 12 11 15 15 C 1.38818 * 119.93513 * 359.97049 * 14 13 12 16 16 N 1.40249 * 120.06176 * 180.02562 * 15 14 13 17 17 C 1.36122 * 125.94181 * 179.97438 * 16 15 14 18 18 C 1.35369 * 106.04825 * 180.02562 * 17 16 15 19 19 N 1.33775 * 106.54096 * 0.02562 * 18 17 16 20 20 N 1.28597 * 109.05929 * 359.97438 * 19 18 17 21 21 C 1.38820 * 119.87285 * 0.27899 * 15 14 13 22 22 C 1.38124 * 119.93012 * 359.47032 * 21 15 14 23 23 C 1.46897 * 110.99983 * 302.58876 * 10 9 7 24 24 C 1.54262 * 110.03317 * 93.93719 * 23 10 9 25 25 C 1.54965 * 104.15863 * 217.13118 * 24 23 10 26 26 C 1.54893 * 102.77539 * 37.89064 * 25 24 23 27 27 C 1.53867 * 110.03248 * 336.71443 * 23 10 9 28 28 H 0.97003 * 120.00222 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46906 * 54.00223 * 9 7 2 30 30 H 1.08998 * 109.47130 * 294.00058 * 9 7 2 31 31 H 1.09004 * 109.46433 * 79.98699 * 11 10 9 32 32 H 1.08992 * 109.47410 * 319.99266 * 11 10 9 33 33 H 1.07997 * 119.96960 * 0.02562 * 13 12 11 34 34 H 1.08007 * 120.02893 * 179.97438 * 14 13 12 35 35 H 1.08003 * 126.97055 * 359.74560 * 17 16 15 36 36 H 1.08003 * 126.72429 * 179.97438 * 18 17 16 37 37 H 1.08004 * 120.03464 * 179.69989 * 21 15 14 38 38 H 1.07998 * 119.96446 * 180.23249 * 22 21 15 39 39 H 1.09001 * 110.01189 * 215.32638 * 23 10 9 40 40 H 1.08998 * 110.48783 * 335.78065 * 24 23 10 41 41 H 1.08998 * 110.48973 * 98.42648 * 24 23 10 42 42 H 1.08994 * 110.72275 * 279.57758 * 25 24 23 43 43 H 1.09001 * 110.92399 * 156.29145 * 25 24 23 44 44 H 1.09004 * 110.48519 * 203.40222 * 26 25 24 45 45 H 1.09001 * 110.60026 * 80.81220 * 26 25 24 46 46 H 1.09000 * 110.03732 * 238.57028 * 27 23 10 47 47 H 1.09002 * 110.03438 * 359.95572 * 27 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.1991 -3.6120 -0.1437 11 6 1.5018 -4.9047 -0.1151 12 6 2.4824 -5.9968 0.2266 13 6 2.7855 -6.2628 1.5493 14 6 3.6842 -7.2628 1.8656 15 6 4.2828 -8.0016 0.8541 16 7 5.1953 -9.0179 1.1723 17 6 5.8489 -9.8127 0.2811 18 6 6.6208 -10.6454 1.0181 19 7 6.4072 -10.3279 2.3000 20 7 5.5600 -9.3623 2.3579 21 6 3.9804 -7.7288 -0.4730 22 6 3.0770 -6.7310 -0.7830 23 6 2.9949 -3.4699 -1.3702 24 6 4.3235 -2.7511 -1.0578 25 6 4.5700 -1.8545 -2.2975 26 6 3.1446 -1.3652 -2.6552 27 6 2.2456 -2.5895 -2.3857 28 1 -0.4850 0.8400 -0.0004 29 1 0.5465 -2.5120 -0.8312 30 1 0.7070 -2.6046 0.9391 31 1 1.0637 -5.1028 -1.0934 32 1 0.7134 -4.8757 0.6369 33 1 2.3192 -5.6880 2.3358 34 1 3.9210 -7.4698 2.8989 35 1 5.7647 -9.7873 -0.7954 36 1 7.2792 -11.4156 0.6444 37 1 4.4483 -8.2987 -1.2622 38 1 2.8385 -6.5209 -1.8151 39 1 3.1936 -4.4510 -1.8017 40 1 4.2254 -2.1414 -0.1597 41 1 5.1308 -3.4744 -0.9427 42 1 4.9954 -2.4358 -3.1155 43 1 5.2157 -1.0128 -2.0470 44 1 3.0924 -1.0772 -3.7052 45 1 2.8541 -0.5307 -2.0168 46 1 2.0815 -3.1429 -3.3103 47 1 1.2911 -2.2683 -1.9687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137365022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:28 Heat of formation + Delta-G solvation = 154.988016 kcal Electronic energy + Delta-G solvation = -27763.496906 eV Core-core repulsion = 24142.394721 eV Total energy + Delta-G solvation = -3621.102184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.57339 -39.78587 -38.55550 -35.32621 -33.94869 -32.67261 -31.80827 -30.80016 -30.50090 -28.09776 -27.24500 -27.03766 -24.73882 -23.86220 -22.88789 -21.98526 -21.72843 -20.84812 -19.91162 -18.83888 -18.18711 -16.74947 -16.62357 -15.82027 -15.57311 -15.40450 -15.19075 -15.01481 -14.62526 -14.37715 -13.93223 -13.83681 -13.64019 -13.14507 -12.94847 -12.75676 -12.37113 -12.05753 -11.94060 -11.60266 -11.26819 -11.20707 -11.15865 -11.02254 -10.91658 -10.80999 -10.67481 -10.47936 -10.30037 -10.19255 -9.98755 -9.68071 -9.58551 -9.25331 -9.13186 -8.87058 -8.52232 -8.43585 -7.26947 -6.08856 -4.05473 0.50422 1.20048 1.86650 2.11006 2.34678 3.26948 3.32938 3.35298 3.58619 4.15824 4.36383 4.37784 4.64647 4.76071 4.80932 4.93517 4.99968 5.04556 5.24679 5.26836 5.38150 5.42289 5.42583 5.53560 5.70131 5.74220 5.83695 5.90969 5.99235 6.02826 6.11261 6.20363 6.26120 6.31524 6.39387 6.45321 6.50452 6.58795 6.65700 6.67934 6.80153 6.82823 6.93059 6.95888 7.30010 7.36166 7.54852 7.86150 8.00694 8.11131 8.25782 8.47107 9.00366 9.54929 11.02338 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021201 B = 0.002866 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.402298 B = 9768.735013 C =10053.105175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.883 3.117 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.079 0.921 9 C 0.186 3.814 10 N -0.527 5.527 11 C 0.082 3.918 12 C -0.041 4.041 13 C -0.078 4.078 14 C -0.098 4.098 15 C 0.099 3.901 16 N -0.232 5.232 17 C -0.051 4.051 18 C -0.049 4.049 19 N -0.270 5.270 20 N -0.080 5.080 21 C -0.115 4.115 22 C -0.097 4.097 23 C 0.097 3.903 24 C -0.110 4.110 25 C -0.123 4.123 26 C -0.116 4.116 27 C -0.157 4.157 28 H 0.261 0.739 29 H 0.010 0.990 30 H 0.026 0.974 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.192 0.808 36 H 0.193 0.807 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.041 0.959 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.036 0.964 45 H 0.093 0.907 46 H 0.030 0.970 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.951 -15.345 -4.609 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.143 4.143 3 Si 0.710 3.290 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.542 4.542 8 H 0.097 0.903 9 C 0.062 3.938 10 N -0.250 5.250 11 C -0.046 4.046 12 C -0.042 4.042 13 C -0.097 4.097 14 C -0.118 4.118 15 C 0.009 3.991 16 N -0.019 5.019 17 C -0.200 4.200 18 C -0.205 4.205 19 N -0.136 5.136 20 N -0.059 5.059 21 C -0.136 4.136 22 C -0.116 4.116 23 C -0.011 4.011 24 C -0.148 4.148 25 C -0.161 4.161 26 C -0.153 4.153 27 C -0.194 4.194 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.209 0.791 36 H 0.210 0.790 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.112 0.888 46 H 0.048 0.952 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.979 -14.979 -2.665 16.738 hybrid contribution 0.076 0.714 -2.069 2.190 sum 7.055 -14.265 -4.734 16.603 Atomic orbital electron populations 1.69924 1.05947 1.26795 1.51161 1.24905 0.94698 0.98871 0.95848 0.86819 0.79736 0.83538 0.78859 1.19875 1.21480 1.20187 1.21411 0.94301 0.89377 1.49078 0.90286 1.19969 0.90448 0.87444 0.95919 1.62429 1.26202 1.00655 1.35742 1.21110 0.93727 0.89369 1.00386 1.20258 0.96228 0.94841 0.92898 1.21037 0.96342 0.95494 0.96849 1.20962 0.96588 0.95258 0.98950 1.17619 0.94947 0.91626 0.94935 1.44796 1.28229 1.23331 1.05560 1.23829 1.00369 0.96745 0.99051 1.23627 1.03894 1.03353 0.89644 1.75112 1.10795 1.07990 1.19712 1.78362 1.12159 1.11581 1.03758 1.20755 0.99938 0.99758 0.93146 1.20954 0.96086 0.94778 0.99823 1.22070 0.93809 0.96347 0.88902 1.22588 0.95111 0.97840 0.99231 1.22447 0.97597 0.98585 0.97506 1.22413 0.93759 0.99908 0.99225 1.22915 1.03346 0.96342 0.96846 0.92926 0.97311 0.95594 0.94308 0.90064 0.84231 0.84314 0.79101 0.79002 0.85272 0.84938 0.93112 0.88800 0.94019 0.93355 0.92793 0.94487 0.88839 0.95160 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.66 13.29 55.43 0.74 -23.93 16 2 C 0.06 1.49 5.14 -17.82 -0.09 1.40 16 3 Si 0.88 20.28 28.51 -169.99 -4.85 15.44 16 4 H -0.27 -6.10 7.09 56.52 0.40 -5.70 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.50 -12.30 5.23 -34.44 -0.18 -12.48 16 8 H 0.08 1.91 3.92 -52.49 -0.21 1.71 16 9 C 0.19 4.23 4.16 -4.98 -0.02 4.21 16 10 N -0.53 -9.77 4.36 -228.19 -1.00 -10.77 16 11 C 0.08 1.25 5.02 -4.97 -0.02 1.22 16 12 C -0.04 -0.54 5.14 -104.59 -0.54 -1.07 16 13 C -0.08 -1.00 9.72 -39.61 -0.38 -1.38 16 14 C -0.10 -1.22 9.62 -39.41 -0.38 -1.60 16 15 C 0.10 1.20 6.68 -83.57 -0.56 0.64 16 16 N -0.23 -2.87 3.56 -10.47 -0.04 -2.91 16 17 C -0.05 -0.48 10.92 -16.67 -0.18 -0.66 16 18 C -0.05 -0.48 12.05 -17.73 -0.21 -0.70 16 19 N -0.27 -3.72 12.39 30.24 0.37 -3.35 16 20 N -0.08 -1.16 12.42 60.35 0.75 -0.41 16 21 C -0.12 -1.19 9.46 -39.41 -0.37 -1.56 16 22 C -0.10 -1.10 8.58 -39.61 -0.34 -1.44 16 23 C 0.10 1.71 2.72 -66.60 -0.18 1.52 16 24 C -0.11 -1.94 5.88 -25.03 -0.15 -2.09 16 25 C -0.12 -2.07 6.90 -24.70 -0.17 -2.24 16 26 C -0.12 -2.18 6.17 -25.07 -0.15 -2.34 16 27 C -0.16 -2.94 5.63 -25.61 -0.14 -3.09 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.01 0.23 5.83 -51.93 -0.30 -0.07 16 30 H 0.03 0.64 8.04 -51.93 -0.42 0.23 16 31 H 0.04 0.57 7.90 -51.93 -0.41 0.16 16 32 H 0.08 1.23 7.84 -51.93 -0.41 0.82 16 33 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.14 1.68 7.69 -52.48 -0.40 1.28 16 35 H 0.19 1.01 7.11 -52.48 -0.37 0.64 16 36 H 0.19 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.13 0.95 6.77 -52.48 -0.36 0.60 16 38 H 0.13 1.32 7.44 -52.49 -0.39 0.93 16 39 H 0.05 0.80 5.74 -51.93 -0.30 0.50 16 40 H 0.09 1.90 5.39 -51.93 -0.28 1.62 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 2.04 4.68 -51.93 -0.24 1.80 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.11 2.44 3.99 -51.93 -0.21 2.23 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -28.77 362.31 -9.03 -37.80 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.39 Total: 4.33 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -4.08 Total: -21.66 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.83 Total: -41.37 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.85 Total: 15.44 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.77 -9.03 -37.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137365022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.785 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds