Wall clock time and date at job start Tue Mar 31 2020 14:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47127 * 239.99791 * 3 2 1 5 5 H 1.48495 * 109.47127 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46742 * 119.99962 * 3 2 1 7 7 C 1.37878 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99714 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00395 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47327 * 173.99631 * 9 7 2 11 11 C 1.46903 * 110.99953 * 178.62709 * 10 9 7 12 12 C 1.50701 * 109.47011 * 199.98395 * 11 10 9 13 13 C 1.38280 * 119.93094 * 84.20386 * 12 11 10 14 14 C 1.38122 * 120.06126 * 180.02562 * 13 12 11 15 15 C 1.38818 * 119.93513 * 359.97049 * 14 13 12 16 16 N 1.40249 * 120.06176 * 180.02562 * 15 14 13 17 17 C 1.36122 * 125.94181 * 179.97438 * 16 15 14 18 18 C 1.35369 * 106.04825 * 180.02562 * 17 16 15 19 19 N 1.33775 * 106.54096 * 0.02562 * 18 17 16 20 20 N 1.28597 * 109.05929 * 359.97438 * 19 18 17 21 21 C 1.38820 * 119.87285 * 0.27899 * 15 14 13 22 22 C 1.38124 * 119.93012 * 359.47032 * 21 15 14 23 23 C 1.46897 * 110.99983 * 302.58876 * 10 9 7 24 24 C 1.54262 * 110.03317 * 93.93719 * 23 10 9 25 25 C 1.54965 * 104.15863 * 217.13118 * 24 23 10 26 26 C 1.54893 * 102.77539 * 37.89064 * 25 24 23 27 27 C 1.53867 * 110.03248 * 336.71443 * 23 10 9 28 28 H 0.97003 * 120.00222 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46906 * 54.00223 * 9 7 2 30 30 H 1.08998 * 109.47130 * 294.00058 * 9 7 2 31 31 H 1.09004 * 109.46433 * 79.98699 * 11 10 9 32 32 H 1.08992 * 109.47410 * 319.99266 * 11 10 9 33 33 H 1.07997 * 119.96960 * 0.02562 * 13 12 11 34 34 H 1.08007 * 120.02893 * 179.97438 * 14 13 12 35 35 H 1.08003 * 126.97055 * 359.74560 * 17 16 15 36 36 H 1.08003 * 126.72429 * 179.97438 * 18 17 16 37 37 H 1.08004 * 120.03464 * 179.69989 * 21 15 14 38 38 H 1.07998 * 119.96446 * 180.23249 * 22 21 15 39 39 H 1.09001 * 110.01189 * 215.32638 * 23 10 9 40 40 H 1.08998 * 110.48783 * 335.78065 * 24 23 10 41 41 H 1.08998 * 110.48973 * 98.42648 * 24 23 10 42 42 H 1.08994 * 110.72275 * 279.57758 * 25 24 23 43 43 H 1.09001 * 110.92399 * 156.29145 * 25 24 23 44 44 H 1.09004 * 110.48519 * 203.40222 * 26 25 24 45 45 H 1.09001 * 110.60026 * 80.81220 * 26 25 24 46 46 H 1.09000 * 110.03732 * 238.57028 * 27 23 10 47 47 H 1.09002 * 110.03438 * 359.95572 * 27 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.1991 -3.6120 -0.1437 11 6 1.5018 -4.9047 -0.1151 12 6 2.4824 -5.9968 0.2266 13 6 2.7855 -6.2628 1.5493 14 6 3.6842 -7.2628 1.8656 15 6 4.2828 -8.0016 0.8541 16 7 5.1953 -9.0179 1.1723 17 6 5.8489 -9.8127 0.2811 18 6 6.6208 -10.6454 1.0181 19 7 6.4072 -10.3279 2.3000 20 7 5.5600 -9.3623 2.3579 21 6 3.9804 -7.7288 -0.4730 22 6 3.0770 -6.7310 -0.7830 23 6 2.9949 -3.4699 -1.3702 24 6 4.3235 -2.7511 -1.0578 25 6 4.5700 -1.8545 -2.2975 26 6 3.1446 -1.3652 -2.6552 27 6 2.2456 -2.5895 -2.3857 28 1 -0.4850 0.8400 -0.0004 29 1 0.5465 -2.5120 -0.8312 30 1 0.7070 -2.6046 0.9391 31 1 1.0637 -5.1028 -1.0934 32 1 0.7134 -4.8757 0.6369 33 1 2.3192 -5.6880 2.3358 34 1 3.9210 -7.4698 2.8989 35 1 5.7647 -9.7873 -0.7954 36 1 7.2792 -11.4156 0.6444 37 1 4.4483 -8.2987 -1.2622 38 1 2.8385 -6.5209 -1.8151 39 1 3.1936 -4.4510 -1.8017 40 1 4.2254 -2.1414 -0.1597 41 1 5.1308 -3.4744 -0.9427 42 1 4.9954 -2.4358 -3.1155 43 1 5.2157 -1.0128 -2.0470 44 1 3.0924 -1.0772 -3.7052 45 1 2.8541 -0.5307 -2.0168 46 1 2.0815 -3.1429 -3.3103 47 1 1.2911 -2.2683 -1.9687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137365022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:27 Heat of formation + Delta-G solvation = 138.951143 kcal Electronic energy + Delta-G solvation = -27764.192317 eV Core-core repulsion = 24142.394721 eV Total energy + Delta-G solvation = -3621.797595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.40773 -40.89483 -39.84789 -36.42457 -35.26932 -34.46982 -32.64414 -31.71791 -31.59248 -29.61193 -28.88845 -28.28362 -26.07432 -24.72040 -24.22110 -23.42135 -22.58530 -21.82184 -21.31555 -19.78977 -19.54494 -18.52046 -17.48877 -17.00795 -16.90394 -16.68964 -16.25042 -16.09700 -16.08867 -15.45220 -15.27412 -14.76744 -14.60352 -14.49535 -14.38148 -13.93587 -13.76728 -13.50932 -13.07727 -12.85502 -12.84027 -12.69221 -12.42415 -12.36306 -12.10444 -12.02378 -12.00315 -11.91554 -11.66602 -11.59245 -11.50728 -11.25207 -10.83526 -10.60668 -10.46139 -10.37846 -10.03682 -9.48213 -8.79914 -8.08810 -6.08370 -0.38249 0.31161 1.01179 1.30394 1.41881 1.43694 1.48860 1.55277 2.44784 2.64863 3.26710 3.42047 3.46021 3.63336 3.82039 3.85207 3.98382 4.03473 4.11237 4.22192 4.28160 4.33263 4.36241 4.49639 4.55029 4.65255 4.74138 4.77995 4.84096 4.89090 4.99299 5.02197 5.05034 5.11297 5.17348 5.22091 5.26208 5.28669 5.33547 5.34769 5.42427 5.56724 5.58129 5.64056 5.79557 5.93050 5.93417 5.97060 6.23542 6.46856 6.79672 7.06593 7.41077 7.55681 9.02778 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021201 B = 0.002866 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.402298 B = 9768.735013 C =10053.105175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.011 3.989 3 Si 0.931 3.069 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.491 4.491 8 H 0.084 0.916 9 C 0.202 3.798 10 N -0.532 5.532 11 C 0.085 3.915 12 C -0.053 4.053 13 C -0.087 4.087 14 C -0.109 4.109 15 C 0.094 3.906 16 N -0.241 5.241 17 C -0.038 4.038 18 C -0.053 4.053 19 N -0.304 5.304 20 N -0.127 5.127 21 C -0.100 4.100 22 C -0.092 4.092 23 C 0.099 3.901 24 C -0.109 4.109 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.155 4.155 28 H 0.257 0.743 29 H -0.009 1.009 30 H -0.006 1.006 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.239 0.761 36 H 0.230 0.770 37 H 0.171 0.829 38 H 0.155 0.845 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.464 -17.419 -7.527 21.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.186 4.186 3 Si 0.758 3.242 4 H -0.186 1.186 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.530 4.530 8 H 0.101 0.899 9 C 0.076 3.924 10 N -0.256 5.256 11 C -0.043 4.043 12 C -0.054 4.054 13 C -0.106 4.106 14 C -0.129 4.129 15 C 0.003 3.997 16 N -0.028 5.028 17 C -0.186 4.186 18 C -0.209 4.209 19 N -0.169 5.169 20 N -0.105 5.105 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.009 4.009 24 C -0.147 4.147 25 C -0.152 4.152 26 C -0.159 4.159 27 C -0.193 4.193 28 H 0.066 0.934 29 H 0.008 0.992 30 H 0.012 0.988 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.255 0.745 36 H 0.246 0.754 37 H 0.188 0.812 38 H 0.173 0.827 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.514 -17.064 -5.565 20.314 hybrid contribution -0.659 1.218 -1.194 1.829 sum 8.855 -15.846 -6.759 19.370 Atomic orbital electron populations 1.70050 1.07343 1.27025 1.53434 1.25535 0.95166 1.01692 0.96183 0.86026 0.78681 0.80331 0.79141 1.18587 1.22041 1.20137 1.21705 0.94543 0.90013 1.46698 0.89879 1.19613 0.90513 0.88718 0.93526 1.62293 1.25538 1.00838 1.36915 1.21084 0.94140 0.88403 1.00669 1.20053 0.96802 0.95065 0.93516 1.20985 0.96792 0.95877 0.96944 1.20930 0.97035 0.95685 0.99206 1.17833 0.94772 0.91459 0.95614 1.44936 1.28433 1.23655 1.05791 1.24657 0.98403 0.94870 1.00702 1.24363 1.04198 1.04043 0.88340 1.75060 1.11270 1.08389 1.22159 1.78357 1.13858 1.13020 1.05242 1.21098 0.98781 0.99023 0.93090 1.21163 0.95467 0.94300 1.00178 1.22159 0.93209 0.97560 0.87982 1.22528 0.95835 0.98026 0.98302 1.22419 0.96173 0.98777 0.97864 1.22371 0.95340 0.98789 0.99371 1.22824 1.01550 0.96914 0.97993 0.93403 0.99183 0.98792 0.93248 0.91184 0.85067 0.85083 0.74516 0.75408 0.81200 0.82736 0.90122 0.92023 0.91979 0.90363 0.92621 0.93043 0.92349 0.92874 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.59 13.29 21.45 0.28 -53.30 16 2 C 0.01 0.60 5.14 84.66 0.43 1.04 16 3 Si 0.93 42.47 28.51 68.60 1.96 44.43 16 4 H -0.26 -11.28 7.09 99.48 0.71 -10.57 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.49 -24.69 5.23 25.60 0.13 -24.56 16 8 H 0.08 4.09 3.92 -2.91 -0.01 4.08 16 9 C 0.20 9.54 4.16 85.56 0.36 9.89 16 10 N -0.53 -19.76 4.36 -875.84 -3.82 -23.58 16 11 C 0.08 2.55 5.02 85.56 0.43 2.98 16 12 C -0.05 -1.31 5.14 -19.85 -0.10 -1.41 16 13 C -0.09 -2.22 9.72 22.25 0.22 -2.00 16 14 C -0.11 -2.68 9.62 22.38 0.22 -2.47 16 15 C 0.09 2.04 6.68 38.07 0.25 2.30 16 16 N -0.24 -5.40 3.56 -187.04 -0.67 -6.07 16 17 C -0.04 -0.55 10.92 83.36 0.91 0.36 16 18 C -0.05 -0.88 12.05 83.73 1.01 0.13 16 19 N -0.30 -8.05 12.39 -58.24 -0.72 -8.77 16 20 N -0.13 -3.62 12.42 37.02 0.46 -3.16 16 21 C -0.10 -1.60 9.46 22.38 0.21 -1.39 16 22 C -0.09 -1.72 8.58 22.25 0.19 -1.53 16 23 C 0.10 3.27 2.72 45.64 0.12 3.39 16 24 C -0.11 -3.60 5.88 31.69 0.19 -3.41 16 25 C -0.11 -3.50 6.90 31.91 0.22 -3.28 16 26 C -0.12 -4.38 6.17 31.67 0.20 -4.19 16 27 C -0.15 -5.60 5.63 31.32 0.18 -5.43 16 28 H 0.26 14.26 8.31 -92.71 -0.77 13.48 16 29 H -0.01 -0.46 5.83 -2.38 -0.01 -0.48 16 30 H -0.01 -0.31 8.04 -2.39 -0.02 -0.33 16 31 H 0.05 1.38 7.90 -2.38 -0.02 1.36 16 32 H 0.07 2.22 7.84 -2.39 -0.02 2.20 16 33 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.13 3.35 7.69 -2.91 -0.02 3.33 16 35 H 0.24 0.90 7.11 -2.91 -0.02 0.88 16 36 H 0.23 1.72 8.06 -2.91 -0.02 1.69 16 37 H 0.17 1.32 6.77 -2.91 -0.02 1.30 16 38 H 0.16 2.24 7.44 -2.91 -0.02 2.22 16 39 H 0.08 2.19 5.74 -2.39 -0.01 2.17 16 40 H 0.06 2.45 5.39 -2.39 -0.01 2.44 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 2.53 4.68 -2.39 -0.01 2.52 16 46 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.07 3.25 3.99 -2.39 -0.01 3.24 16 Total: -1.00 -66.72 362.31 3.65 -63.08 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.99 Total: 16.96 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 5.16 Total: -29.58 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -4.46 Total: -94.88 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.96 Total: 44.43 kcal Total: -66.72 3.65 -63.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137365022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.029 kcal (2) G-P(sol) polarization free energy of solvation -66.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds