Wall clock time and date at job start Tue Mar 31 2020 14:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35996 * 117.00201 * 2 1 4 4 C 1.38715 * 119.98345 * 180.02562 * 3 2 1 5 5 C 1.38092 * 120.01974 * 180.23493 * 4 3 2 6 6 C 1.38880 * 119.97873 * 359.50901 * 5 4 3 7 7 N 1.39965 * 120.01945 * 180.23365 * 6 5 4 8 8 C 1.46500 * 119.99823 * 176.00434 * 7 6 5 9 9 C 1.39690 * 119.99763 * 356.00296 * 7 6 5 10 10 C 1.38935 * 120.07250 * 88.11606 * 9 7 6 11 11 C 1.38106 * 119.91863 * 179.76485 * 10 9 7 12 12 C 1.38289 * 120.07227 * 0.50980 * 11 10 9 13 13 C 1.50709 * 119.91899 * 179.76405 * 12 11 10 14 14 N 1.46499 * 109.46816 * 269.97783 * 13 12 11 15 15 C 1.46504 * 119.99990 * 90.00397 * 14 13 12 16 16 C 1.36936 * 119.99968 * 269.99493 * 14 13 12 17 17 H 1.08001 * 120.00000 * 20.76835 * 16 14 13 18 18 C 1.38812 * 119.99862 * 200.76230 * 16 14 13 19 19 N 1.31615 * 120.00605 * 19.60327 * 18 16 14 20 20 Si 1.86802 * 119.99769 * 199.60672 * 18 16 14 21 21 H 1.48501 * 109.47444 * 59.99891 * 20 18 16 22 22 H 1.48503 * 109.47382 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47421 * 300.00141 * 20 18 16 24 24 C 1.38292 * 120.15853 * 359.74315 * 12 11 10 25 25 C 1.38096 * 120.07592 * 0.02562 * 24 12 11 26 26 C 1.38881 * 119.96339 * 0.49106 * 6 5 4 27 27 C 1.38105 * 119.97577 * 359.74303 * 26 6 5 28 28 H 1.08996 * 109.47042 * 299.99848 * 1 2 3 29 29 H 1.08997 * 109.46944 * 59.99949 * 1 2 3 30 30 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.98646 * 359.95359 * 4 3 2 32 32 H 1.07998 * 120.00905 * 179.75067 * 5 4 3 33 33 H 1.08994 * 109.47198 * 89.99869 * 8 7 6 34 34 H 1.08997 * 109.46810 * 210.00219 * 8 7 6 35 35 H 1.09001 * 109.46951 * 329.99936 * 8 7 6 36 36 H 1.08000 * 120.04301 * 359.97438 * 10 9 7 37 37 H 1.07995 * 119.96232 * 180.22518 * 11 10 9 38 38 H 1.08998 * 109.47230 * 29.97706 * 13 12 11 39 39 H 1.08998 * 109.46737 * 149.97641 * 13 12 11 40 40 H 1.09003 * 109.47005 * 91.34146 * 15 14 13 41 41 H 1.09001 * 109.47147 * 211.33704 * 15 14 13 42 42 H 1.08998 * 109.46838 * 331.34171 * 15 14 13 43 43 H 0.96991 * 120.00702 * 179.97438 * 19 18 16 44 44 H 1.08005 * 119.96077 * 179.97438 * 24 12 11 45 45 H 1.07993 * 120.03667 * 179.97438 * 25 24 12 46 46 H 1.07997 * 120.01148 * 179.72402 * 26 6 5 47 47 H 1.07996 * 119.98742 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4317 1.2839 -0.0005 5 6 4.0594 2.5138 0.0044 6 6 3.3034 3.6788 -0.0005 7 7 3.9388 4.9259 -0.0005 8 6 3.1439 6.1530 -0.0940 9 6 5.3309 5.0005 0.0888 10 6 6.1056 4.9580 -1.0637 11 6 7.4814 5.0369 -0.9722 12 6 8.0883 5.1474 0.2655 13 6 9.5902 5.2279 0.3617 14 7 10.1447 3.8773 0.4829 15 6 10.5072 3.1236 -0.7199 16 6 10.3244 3.3195 1.7206 17 1 9.7731 3.6980 2.5687 18 6 11.2150 2.2676 1.8851 19 7 12.1535 2.0532 0.9875 20 14 11.0816 1.1560 3.3805 21 1 9.7481 0.5026 3.3942 22 1 12.1408 0.1169 3.3210 23 1 11.2493 1.9644 4.6148 24 6 7.3204 5.1847 1.4150 25 6 5.9440 5.1111 1.3305 26 6 1.9165 3.6057 0.0001 27 6 1.2904 2.3747 0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0194 0.3778 -0.0002 32 1 5.1379 2.5698 0.0080 33 1 2.8793 6.4916 0.9077 34 1 3.7258 6.9253 -0.5968 35 1 2.2352 5.9548 -0.6624 36 1 5.6324 4.8668 -2.0303 37 1 8.0841 5.0076 -1.8679 38 1 9.9867 5.7043 -0.5349 39 1 9.8672 5.8144 1.2376 40 1 11.5527 3.3112 -0.9649 41 1 10.3620 2.0586 -0.5388 42 1 9.8768 3.4402 -1.5508 43 1 12.7761 1.3185 1.1027 44 1 7.7978 5.2706 2.3800 45 1 5.3450 5.1399 2.2286 46 1 1.3279 4.5111 0.0008 47 1 0.2120 2.3176 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137915219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:52 Heat of formation + Delta-G solvation = 58.284124 kcal Electronic energy + Delta-G solvation = -26999.610383 eV Core-core repulsion = 23342.022052 eV Total energy + Delta-G solvation = -3657.588331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.33514 -39.33521 -37.83855 -35.89582 -34.83164 -31.84156 -31.10584 -30.58318 -29.81158 -29.35850 -27.29276 -26.70794 -25.82166 -24.64346 -22.47174 -22.29530 -22.06864 -20.90735 -19.99080 -18.28083 -17.42472 -16.67450 -16.36528 -15.76700 -15.61119 -15.30561 -15.05181 -14.81038 -14.70678 -13.81910 -13.77872 -13.60361 -13.56650 -13.15815 -13.14098 -12.96937 -12.75026 -12.67009 -12.33866 -12.10101 -11.91569 -11.79648 -11.45364 -11.26229 -10.98532 -10.90084 -10.76261 -10.68182 -10.56233 -10.29620 -9.98479 -9.88332 -9.39757 -8.97984 -8.55043 -8.53294 -8.14440 -7.09164 -6.78177 -5.74402 -3.15284 1.35438 1.62053 1.64421 1.79765 3.10927 3.33502 3.40702 3.46933 3.49324 3.85023 4.09568 4.55477 4.72415 4.85132 4.92178 4.98238 5.05678 5.22757 5.26832 5.30917 5.31817 5.35852 5.37797 5.42474 5.58619 5.61760 5.66565 5.72875 5.85002 5.90541 5.94001 5.98529 6.17451 6.19288 6.34885 6.37797 6.48707 6.62690 6.69950 6.70690 6.81430 6.84031 7.20909 7.21980 7.30063 7.34767 7.50880 7.65785 7.76108 7.81821 8.37859 9.22042 9.86518 10.34671 11.31956 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.003261 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.769210 B = 8583.832544 C =10133.560666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.067 3.933 4 C -0.102 4.102 5 C -0.139 4.139 6 C 0.186 3.814 7 N -0.590 5.590 8 C 0.101 3.899 9 C 0.121 3.879 10 C -0.120 4.120 11 C -0.108 4.108 12 C -0.070 4.070 13 C 0.180 3.820 14 N -0.591 5.591 15 C 0.161 3.839 16 C -0.257 4.257 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.902 5.902 20 Si 0.898 3.102 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C -0.097 4.097 25 C -0.118 4.118 26 C -0.160 4.160 27 C -0.164 4.164 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.045 0.955 42 H -0.001 1.001 43 H 0.253 0.747 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.123 0.877 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.344 5.175 -4.250 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.021 3.979 4 C -0.121 4.121 5 C -0.161 4.161 6 C 0.087 3.913 7 N -0.299 5.299 8 C -0.042 4.042 9 C 0.030 3.970 10 C -0.139 4.139 11 C -0.127 4.127 12 C -0.074 4.074 13 C 0.052 3.948 14 N -0.313 5.313 15 C 0.016 3.984 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.728 3.272 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C -0.116 4.116 25 C -0.137 4.137 26 C -0.183 4.183 27 C -0.183 4.183 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.018 0.982 43 H 0.063 0.937 44 H 0.140 0.860 45 H 0.132 0.868 46 H 0.141 0.859 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.025 4.995 -4.268 22.984 hybrid contribution -0.372 -0.629 0.821 1.099 sum -22.397 4.366 -3.447 23.078 Atomic orbital electron populations 1.22946 0.79204 1.03414 1.00903 1.86063 1.20642 1.27094 1.89828 1.18797 0.92190 0.83969 1.02903 1.20240 0.91223 0.98111 1.02506 1.20674 1.00308 0.90163 1.04992 1.17780 0.91215 0.85126 0.97148 1.43592 1.02834 1.02894 1.80596 1.21602 0.95610 0.86036 1.00906 1.17232 0.81867 1.05074 0.92802 1.21308 0.93956 1.01175 0.97493 1.20934 0.93519 1.00592 0.97691 1.21304 0.99438 0.94346 0.92294 1.19800 0.86619 0.88394 0.99962 1.43866 1.72333 1.11536 1.03539 1.20781 0.96380 0.95880 0.85322 1.19095 1.18542 1.14236 0.86738 0.91436 1.24890 0.95691 1.00934 0.97920 1.70098 1.16606 1.31376 1.36604 0.86428 0.77292 0.80828 0.82632 1.21046 1.21644 1.20906 1.20965 0.92468 0.99466 0.98735 1.21337 0.94971 1.00849 0.96560 1.20397 0.92234 0.97485 1.08170 1.20899 0.99342 0.91782 1.06307 0.93073 0.93085 0.88698 0.85191 0.84903 0.93546 0.91484 0.91553 0.86774 0.86333 0.93511 0.92401 0.95568 0.93656 0.98223 0.93673 0.85987 0.86763 0.85888 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.98 10.50 -19.73 -0.21 -4.19 16 3 C 0.07 0.88 6.69 -39.23 -0.26 0.62 16 4 C -0.10 -1.44 9.98 -39.46 -0.39 -1.83 16 5 C -0.14 -2.07 9.31 -39.40 -0.37 -2.44 16 6 C 0.19 2.52 6.53 -83.67 -0.55 1.98 16 7 N -0.59 -7.63 3.03 -118.97 -0.36 -7.99 16 8 C 0.10 0.97 10.08 59.85 0.60 1.57 16 9 C 0.12 1.77 3.56 -83.76 -0.30 1.47 16 10 C -0.12 -1.78 9.84 -39.37 -0.39 -2.16 16 11 C -0.11 -1.75 9.69 -39.61 -0.38 -2.13 16 12 C -0.07 -1.26 5.47 -104.58 -0.57 -1.83 16 13 C 0.18 3.61 5.78 -5.19 -0.03 3.58 16 14 N -0.59 -14.66 2.91 -182.49 -0.53 -15.19 16 15 C 0.16 3.94 9.01 59.85 0.54 4.48 16 16 C -0.26 -6.99 9.63 -15.06 -0.15 -7.14 16 17 H 0.07 1.79 7.90 -52.49 -0.41 1.38 16 18 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 19 N -0.90 -26.37 11.01 55.49 0.61 -25.76 16 20 Si 0.90 22.02 29.60 -169.99 -5.03 16.98 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C -0.10 -1.65 9.69 -39.61 -0.38 -2.03 16 25 C -0.12 -1.82 9.97 -39.38 -0.39 -2.21 16 26 C -0.16 -1.86 9.17 -39.39 -0.36 -2.23 16 27 C -0.16 -1.86 9.03 -39.46 -0.36 -2.22 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.13 2.18 6.89 -52.49 -0.36 1.81 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 35 H 0.07 0.53 6.39 -51.93 -0.33 0.20 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.05 0.87 8.01 -51.93 -0.42 0.45 16 39 H 0.06 1.15 7.98 -51.93 -0.41 0.73 16 40 H 0.03 0.68 7.60 -51.93 -0.39 0.29 16 41 H 0.04 1.20 7.11 -51.93 -0.37 0.84 16 42 H 0.00 -0.02 8.06 -51.93 -0.42 -0.44 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.12 2.06 8.06 -52.48 -0.42 1.64 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.12 1.15 6.26 -52.49 -0.33 0.82 16 47 H 0.12 1.08 6.29 -52.49 -0.33 0.75 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -31.10 387.27 -9.60 -40.70 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.09 Total: 0.86 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.83 Total: -11.25 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.28 Total: -48.94 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.21 Total: -4.19 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.10 -9.60 -40.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137915219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.984 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds