Wall clock time and date at job start Tue Mar 31 2020 14:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35996 * 117.00201 * 2 1 4 4 C 1.38715 * 119.98345 * 180.02562 * 3 2 1 5 5 C 1.38092 * 120.01974 * 180.23493 * 4 3 2 6 6 C 1.38880 * 119.97873 * 359.50901 * 5 4 3 7 7 N 1.39965 * 120.01945 * 180.23365 * 6 5 4 8 8 C 1.46500 * 119.99823 * 176.00434 * 7 6 5 9 9 C 1.39690 * 119.99763 * 356.00296 * 7 6 5 10 10 C 1.38935 * 120.07250 * 88.11606 * 9 7 6 11 11 C 1.38106 * 119.91863 * 179.76485 * 10 9 7 12 12 C 1.38289 * 120.07227 * 0.50980 * 11 10 9 13 13 C 1.50709 * 119.91899 * 179.76405 * 12 11 10 14 14 N 1.46499 * 109.46816 * 269.97783 * 13 12 11 15 15 C 1.46504 * 119.99990 * 90.00397 * 14 13 12 16 16 C 1.36936 * 119.99968 * 269.99493 * 14 13 12 17 17 H 1.08001 * 120.00000 * 20.76835 * 16 14 13 18 18 C 1.38812 * 119.99862 * 200.76230 * 16 14 13 19 19 N 1.31615 * 120.00605 * 19.60327 * 18 16 14 20 20 Si 1.86802 * 119.99769 * 199.60672 * 18 16 14 21 21 H 1.48501 * 109.47444 * 59.99891 * 20 18 16 22 22 H 1.48503 * 109.47382 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47421 * 300.00141 * 20 18 16 24 24 C 1.38292 * 120.15853 * 359.74315 * 12 11 10 25 25 C 1.38096 * 120.07592 * 0.02562 * 24 12 11 26 26 C 1.38881 * 119.96339 * 0.49106 * 6 5 4 27 27 C 1.38105 * 119.97577 * 359.74303 * 26 6 5 28 28 H 1.08996 * 109.47042 * 299.99848 * 1 2 3 29 29 H 1.08997 * 109.46944 * 59.99949 * 1 2 3 30 30 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.98646 * 359.95359 * 4 3 2 32 32 H 1.07998 * 120.00905 * 179.75067 * 5 4 3 33 33 H 1.08994 * 109.47198 * 89.99869 * 8 7 6 34 34 H 1.08997 * 109.46810 * 210.00219 * 8 7 6 35 35 H 1.09001 * 109.46951 * 329.99936 * 8 7 6 36 36 H 1.08000 * 120.04301 * 359.97438 * 10 9 7 37 37 H 1.07995 * 119.96232 * 180.22518 * 11 10 9 38 38 H 1.08998 * 109.47230 * 29.97706 * 13 12 11 39 39 H 1.08998 * 109.46737 * 149.97641 * 13 12 11 40 40 H 1.09003 * 109.47005 * 91.34146 * 15 14 13 41 41 H 1.09001 * 109.47147 * 211.33704 * 15 14 13 42 42 H 1.08998 * 109.46838 * 331.34171 * 15 14 13 43 43 H 0.96991 * 120.00702 * 179.97438 * 19 18 16 44 44 H 1.08005 * 119.96077 * 179.97438 * 24 12 11 45 45 H 1.07993 * 120.03667 * 179.97438 * 25 24 12 46 46 H 1.07997 * 120.01148 * 179.72402 * 26 6 5 47 47 H 1.07996 * 119.98742 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4317 1.2839 -0.0005 5 6 4.0594 2.5138 0.0044 6 6 3.3034 3.6788 -0.0005 7 7 3.9388 4.9259 -0.0005 8 6 3.1439 6.1530 -0.0940 9 6 5.3309 5.0005 0.0888 10 6 6.1056 4.9580 -1.0637 11 6 7.4814 5.0369 -0.9722 12 6 8.0883 5.1474 0.2655 13 6 9.5902 5.2279 0.3617 14 7 10.1447 3.8773 0.4829 15 6 10.5072 3.1236 -0.7199 16 6 10.3244 3.3195 1.7206 17 1 9.7731 3.6980 2.5687 18 6 11.2150 2.2676 1.8851 19 7 12.1535 2.0532 0.9875 20 14 11.0816 1.1560 3.3805 21 1 9.7481 0.5026 3.3942 22 1 12.1408 0.1169 3.3210 23 1 11.2493 1.9644 4.6148 24 6 7.3204 5.1847 1.4150 25 6 5.9440 5.1111 1.3305 26 6 1.9165 3.6057 0.0001 27 6 1.2904 2.3747 0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0194 0.3778 -0.0002 32 1 5.1379 2.5698 0.0080 33 1 2.8793 6.4916 0.9077 34 1 3.7258 6.9253 -0.5968 35 1 2.2352 5.9548 -0.6624 36 1 5.6324 4.8668 -2.0303 37 1 8.0841 5.0076 -1.8679 38 1 9.9867 5.7043 -0.5349 39 1 9.8672 5.8144 1.2376 40 1 11.5527 3.3112 -0.9649 41 1 10.3620 2.0586 -0.5388 42 1 9.8768 3.4402 -1.5508 43 1 12.7761 1.3185 1.1027 44 1 7.7978 5.2706 2.3800 45 1 5.3450 5.1399 2.2286 46 1 1.3279 4.5111 0.0008 47 1 0.2120 2.3176 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137915219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:51 Heat of formation + Delta-G solvation = 43.404337 kcal Electronic energy + Delta-G solvation = -27000.255619 eV Core-core repulsion = 23342.022052 eV Total energy + Delta-G solvation = -3658.233567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.32927 -40.42334 -38.92607 -37.40279 -36.15461 -33.57444 -32.24058 -31.83995 -31.21480 -30.27986 -28.12975 -27.98770 -27.73097 -25.92444 -23.71050 -23.54411 -23.24168 -22.36227 -21.23809 -19.19280 -18.74492 -18.37846 -17.28803 -16.92701 -16.68343 -16.60946 -16.44821 -16.16750 -15.63251 -15.49182 -15.12080 -14.96564 -14.62229 -14.51605 -14.29735 -14.25978 -13.89799 -13.63893 -13.48150 -13.28864 -13.10971 -12.94168 -12.78823 -12.69182 -12.59956 -12.44041 -12.25430 -12.13721 -11.95713 -11.95114 -11.77125 -11.60581 -10.60952 -10.32173 -9.97183 -9.80161 -9.47197 -8.80159 -8.05718 -7.85111 -5.27544 0.37104 0.38049 0.53986 0.63944 1.43997 1.48001 1.53583 2.15129 2.49894 2.54308 2.83545 2.86778 3.28886 3.85077 3.87664 3.97076 4.00349 4.10569 4.17687 4.19999 4.37022 4.39263 4.45889 4.48486 4.53511 4.57304 4.66137 4.68565 4.76044 4.80031 4.81925 4.86253 4.90500 5.00722 5.06622 5.14078 5.19112 5.28424 5.34128 5.41918 5.49206 5.59846 5.62388 5.68360 5.71132 5.86680 5.97230 6.31323 6.41204 6.59377 6.68672 7.13907 7.86327 8.29959 9.19462 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.003261 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.769210 B = 8583.832544 C =10133.560666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.345 6.345 3 C 0.060 3.940 4 C -0.123 4.123 5 C -0.160 4.160 6 C 0.175 3.825 7 N -0.594 5.594 8 C 0.096 3.904 9 C 0.134 3.866 10 C -0.118 4.118 11 C -0.109 4.109 12 C -0.089 4.089 13 C 0.181 3.819 14 N -0.608 5.608 15 C 0.176 3.824 16 C -0.258 4.258 17 H 0.070 0.930 18 C -0.051 4.051 19 N -0.935 5.935 20 Si 0.958 3.042 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.273 1.273 24 C -0.107 4.107 25 C -0.121 4.121 26 C -0.151 4.151 27 C -0.156 4.156 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.003 0.997 41 H 0.015 0.985 42 H 0.032 0.968 43 H 0.248 0.752 44 H 0.116 0.884 45 H 0.124 0.876 46 H 0.154 0.846 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.039 6.183 -4.357 27.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C 0.014 3.986 4 C -0.142 4.142 5 C -0.182 4.182 6 C 0.076 3.924 7 N -0.304 5.304 8 C -0.045 4.045 9 C 0.042 3.958 10 C -0.138 4.138 11 C -0.128 4.128 12 C -0.092 4.092 13 C 0.055 3.945 14 N -0.330 5.330 15 C 0.031 3.969 16 C -0.388 4.388 17 H 0.087 0.913 18 C -0.246 4.246 19 N -0.581 5.581 20 Si 0.786 3.214 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.198 1.198 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.173 4.173 27 C -0.175 4.175 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.021 0.979 41 H 0.034 0.966 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.134 0.866 45 H 0.142 0.858 46 H 0.171 0.829 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -25.768 6.045 -4.371 26.826 hybrid contribution 0.583 -0.899 0.817 1.347 sum -25.185 5.145 -3.554 25.950 Atomic orbital electron populations 1.23272 0.76813 1.05180 1.02134 1.86038 1.23183 1.26963 1.89755 1.18906 0.91902 0.85067 1.02695 1.20268 0.92348 0.97731 1.03858 1.20513 0.99223 0.91337 1.07150 1.17905 0.92107 0.84726 0.97658 1.43724 1.02138 1.03800 1.80733 1.21824 0.96048 0.84663 1.02008 1.17307 0.83166 1.02930 0.92348 1.21462 0.93448 1.00478 0.98390 1.21035 0.94315 1.00133 0.97307 1.20976 0.97845 0.96906 0.93426 1.19886 0.88021 0.86118 1.00487 1.44085 1.72870 1.13313 1.02775 1.20522 0.95724 0.94265 0.86418 1.19406 1.17507 1.14030 0.87825 0.91251 1.25601 0.95861 1.02480 1.00672 1.70234 1.17569 1.31855 1.38463 0.85482 0.76725 0.79022 0.80156 1.21203 1.21984 1.19808 1.20987 0.93310 0.99983 0.98308 1.21435 0.94366 1.00735 0.97493 1.20731 0.91405 0.98796 1.06349 1.21258 1.00880 0.90878 1.04504 0.91836 0.91663 0.86926 0.86071 0.87467 0.92555 0.91024 0.89353 0.85192 0.85424 0.92035 0.92733 0.97855 0.96648 0.94947 0.94274 0.86570 0.85758 0.82858 0.82626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.00 10.50 -93.51 -0.98 -8.98 16 3 C 0.06 1.49 6.69 22.50 0.15 1.64 16 4 C -0.12 -3.52 9.98 22.35 0.22 -3.30 16 5 C -0.16 -4.75 9.31 22.39 0.21 -4.54 16 6 C 0.17 4.39 6.53 38.15 0.25 4.64 16 7 N -0.59 -13.95 3.03 -530.31 -1.61 -15.55 16 8 C 0.10 1.50 10.08 127.77 1.29 2.78 16 9 C 0.13 3.73 3.56 38.22 0.14 3.86 16 10 C -0.12 -3.34 9.84 22.41 0.22 -3.12 16 11 C -0.11 -3.41 9.69 22.25 0.22 -3.20 16 12 C -0.09 -3.15 5.47 -19.84 -0.11 -3.26 16 13 C 0.18 7.28 5.78 85.64 0.50 7.77 16 14 N -0.61 -30.64 2.91 -731.29 -2.13 -32.76 16 15 C 0.18 8.79 9.01 127.77 1.15 9.94 16 16 C -0.26 -14.27 9.63 84.03 0.81 -13.46 16 17 H 0.07 3.73 7.90 -2.91 -0.02 3.71 16 18 C -0.05 -2.90 4.92 84.86 0.42 -2.49 16 19 N -0.93 -56.25 11.01 21.65 0.24 -56.02 16 20 Si 0.96 46.20 29.60 68.60 2.03 48.23 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 24 C -0.11 -3.62 9.69 22.25 0.22 -3.41 16 25 C -0.12 -3.63 9.97 22.40 0.22 -3.41 16 26 C -0.15 -2.96 9.17 22.39 0.21 -2.76 16 27 C -0.16 -3.03 9.03 22.35 0.20 -2.82 16 28 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 29 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.12 3.49 8.06 -2.91 -0.02 3.47 16 32 H 0.11 3.65 6.89 -2.91 -0.02 3.63 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.07 8.05 -2.39 -0.02 1.05 16 35 H 0.09 1.00 6.39 -2.39 -0.02 0.98 16 36 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 37 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 38 H 0.06 2.26 8.01 -2.39 -0.02 2.24 16 39 H 0.05 2.19 7.98 -2.39 -0.02 2.17 16 40 H 0.00 0.17 7.60 -2.39 -0.02 0.15 16 41 H 0.01 0.82 7.11 -2.39 -0.02 0.80 16 42 H 0.03 1.37 8.06 -2.39 -0.02 1.35 16 43 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 45 H 0.12 3.44 8.06 -2.91 -0.02 3.41 16 46 H 0.15 2.05 6.26 -2.91 -0.02 2.03 16 47 H 0.16 1.96 6.29 -2.91 -0.02 1.95 16 Total: -1.00 -68.45 387.27 5.92 -62.53 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.95 Total: 16.31 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 7.42 Total: -13.75 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -3.49 Total: -104.33 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.98 Total: -8.98 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -68.45 5.92 -62.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137915219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.930 kcal (2) G-P(sol) polarization free energy of solvation -68.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds