Wall clock time and date at job start Tue Mar 31 2020 14:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00269 * 2 1 4 4 H 1.48496 * 109.47418 * 270.00172 * 3 2 1 5 5 H 1.48496 * 109.47017 * 30.00513 * 3 2 1 6 6 H 1.48505 * 109.46996 * 149.99949 * 3 2 1 7 7 C 1.37878 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00407 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00207 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47407 * 177.41998 * 9 7 2 11 11 C 1.46906 * 110.99820 * 209.31099 * 10 9 7 12 12 C 1.50696 * 109.46999 * 160.87592 * 11 10 9 13 13 C 1.38282 * 119.93421 * 275.15240 * 12 11 10 14 14 C 1.38119 * 120.06253 * 179.72904 * 13 12 11 15 15 C 1.38828 * 119.93701 * 0.56464 * 14 13 12 16 16 N 1.40203 * 120.06877 * 179.73247 * 15 14 13 17 17 C 1.34722 * 126.83702 * 359.68149 * 16 15 14 18 18 N 1.30853 * 108.02897 * 179.89699 * 17 16 15 19 19 C 1.33265 * 109.84359 * 0.38206 * 18 17 16 20 20 N 1.30746 * 108.99965 * 359.76516 * 19 18 17 21 21 C 1.38834 * 119.86982 * 359.70371 * 15 14 13 22 22 C 1.38126 * 119.92749 * 0.02562 * 21 15 14 23 23 C 1.46895 * 111.00222 * 85.35606 * 10 9 7 24 24 C 1.54968 * 110.92415 * 310.11769 * 23 10 9 25 25 C 1.54266 * 104.15793 * 156.29730 * 24 23 10 26 26 C 1.53873 * 106.64312 * 336.44347 * 25 24 23 27 27 C 1.54268 * 106.59935 * 359.97438 * 26 25 24 28 28 H 0.97000 * 119.99349 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47170 * 57.41255 * 9 7 2 30 30 H 1.09008 * 109.46951 * 297.41593 * 9 7 2 31 31 H 1.09000 * 109.46858 * 280.87872 * 11 10 9 32 32 H 1.09002 * 109.47242 * 40.87809 * 11 10 9 33 33 H 1.08000 * 119.96630 * 359.97438 * 13 12 11 34 34 H 1.08002 * 120.03059 * 180.29191 * 14 13 12 35 35 H 1.07995 * 125.98612 * 0.04365 * 17 16 15 36 36 H 1.07998 * 125.49913 * 179.74139 * 19 18 17 37 37 H 1.07993 * 120.03864 * 179.97438 * 21 15 14 38 38 H 1.08003 * 119.96087 * 179.97438 * 22 21 15 39 39 H 1.09000 * 110.67608 * 186.80850 * 23 10 9 40 40 H 1.08995 * 110.47558 * 37.64075 * 24 23 10 41 41 H 1.08999 * 110.52894 * 274.97493 * 24 23 10 42 42 H 1.09012 * 110.02731 * 217.13616 * 25 24 23 43 43 H 1.08993 * 110.03418 * 95.75775 * 25 24 23 44 44 H 1.08995 * 110.03289 * 119.26749 * 26 25 24 45 45 H 1.09006 * 110.03317 * 240.65064 * 26 25 24 46 46 H 1.08997 * 110.48288 * 142.28398 * 27 26 25 47 47 H 1.09000 * 110.48818 * 264.80064 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2044 -3.6150 -0.0644 11 6 1.6114 -4.7767 -0.7406 12 6 2.7073 -5.7011 -1.2047 13 6 3.3319 -5.4764 -2.4178 14 6 4.3405 -6.3188 -2.8432 15 6 4.7189 -7.3987 -2.0571 16 7 5.7385 -8.2587 -2.4889 17 6 6.4361 -8.1714 -3.6381 18 7 7.2953 -9.1580 -3.6662 19 6 7.1719 -9.8969 -2.5641 20 7 6.2317 -9.3865 -1.8125 21 6 4.0862 -7.6250 -0.8423 22 6 3.0821 -6.7758 -0.4195 23 6 2.6832 -3.9745 1.2770 24 6 3.1667 -2.7194 2.0467 25 6 3.0447 -3.1175 3.5321 26 6 1.9962 -4.2415 3.6024 27 6 1.5163 -4.4876 2.1571 28 1 -0.4849 0.8401 -0.0004 29 1 0.5903 -2.5365 -0.8679 30 1 0.6592 -2.5778 0.9103 31 1 0.9585 -5.3065 -0.0470 32 1 1.0318 -4.4400 -1.6001 33 1 3.0335 -4.6392 -3.0313 34 1 4.8312 -6.1400 -3.7886 35 1 6.3102 -7.4177 -4.4013 36 1 7.7542 -10.7757 -2.3298 37 1 4.3781 -8.4644 -0.2288 38 1 2.5892 -6.9516 0.5253 39 1 3.4770 -4.7189 1.2156 40 1 2.5251 -1.8663 1.8264 41 1 4.2032 -2.4932 1.7963 42 1 2.7152 -2.2620 4.1220 43 1 4.0043 -3.4783 3.9021 44 1 2.4472 -5.1481 4.0057 45 1 1.1582 -3.9319 4.2271 46 1 1.3491 -5.5511 1.9866 47 1 0.6065 -3.9221 1.9556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139332382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:32 Heat of formation + Delta-G solvation = 124.859336 kcal Electronic energy + Delta-G solvation = -27452.302902 eV Core-core repulsion = 23829.894240 eV Total energy + Delta-G solvation = -3622.408662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.48202 -39.65370 -38.38108 -35.12201 -33.92584 -32.58255 -31.79987 -30.91112 -30.18504 -28.27900 -27.30125 -26.83733 -24.70216 -23.54140 -22.88760 -22.01692 -21.30074 -20.93045 -19.65595 -18.65164 -18.42695 -16.46938 -16.02075 -15.96527 -15.77776 -15.47761 -15.18841 -14.69231 -14.54257 -14.33196 -14.02564 -13.92360 -13.51846 -13.24588 -12.85228 -12.71312 -12.57822 -12.42215 -11.85908 -11.65913 -11.25947 -11.14954 -11.05048 -10.85512 -10.80566 -10.70716 -10.59012 -10.42518 -10.33040 -10.22098 -10.10648 -10.09745 -9.91507 -9.33996 -9.31007 -9.04936 -8.43983 -8.27749 -7.26149 -6.06728 -4.04232 0.61695 1.30483 1.89824 2.01728 2.67092 3.28878 3.35998 3.39274 3.69389 4.01091 4.25189 4.38931 4.61983 4.75332 4.83858 4.91980 5.02947 5.18506 5.22622 5.29369 5.33041 5.37982 5.47926 5.53059 5.74805 5.85892 5.92555 5.97190 6.03277 6.09134 6.10290 6.13336 6.17976 6.24658 6.26663 6.31143 6.33906 6.47808 6.55422 6.59696 6.69198 6.73847 6.94961 6.96134 7.12772 7.30347 7.52946 7.76752 7.79922 8.07350 8.17548 8.48607 9.01045 9.55665 11.02651 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.003033 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.035157 B = 9229.915466 C =10120.806451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.494 4.494 8 H 0.067 0.933 9 C 0.186 3.814 10 N -0.522 5.522 11 C 0.084 3.916 12 C -0.052 4.052 13 C -0.072 4.072 14 C -0.130 4.130 15 C 0.127 3.873 16 N -0.319 5.319 17 C 0.258 3.742 18 N -0.543 5.543 19 C 0.199 3.801 20 N -0.316 5.316 21 C -0.110 4.110 22 C -0.095 4.095 23 C 0.092 3.908 24 C -0.136 4.136 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.160 4.160 28 H 0.261 0.739 29 H 0.025 0.975 30 H 0.007 0.993 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.222 0.778 36 H 0.221 0.779 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.067 0.933 40 H 0.127 0.873 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -14.817 -2.158 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.147 4.147 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.533 4.533 8 H 0.085 0.915 9 C 0.062 3.938 10 N -0.244 5.244 11 C -0.044 4.044 12 C -0.054 4.054 13 C -0.091 4.091 14 C -0.151 4.151 15 C 0.035 3.965 16 N -0.103 5.103 17 C -0.037 4.037 18 N -0.269 5.269 19 C -0.103 4.103 20 N -0.142 5.142 21 C -0.130 4.130 22 C -0.115 4.115 23 C -0.017 4.017 24 C -0.173 4.173 25 C -0.163 4.163 26 C -0.154 4.154 27 C -0.199 4.199 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.238 0.762 36 H 0.237 0.763 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.085 0.915 40 H 0.145 0.855 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.235 -14.889 -2.006 16.675 hybrid contribution -0.244 0.753 0.415 0.894 sum 6.991 -14.136 -1.591 15.850 Atomic orbital electron populations 1.69948 1.06013 1.26766 1.51005 1.24982 0.94818 0.99163 0.95767 0.86576 0.79858 0.83370 0.78141 1.20726 1.21434 1.19743 1.21171 0.93758 0.89545 1.48802 0.91490 1.19905 0.89997 0.87400 0.96521 1.62260 1.40195 1.05084 1.16872 1.21149 0.92472 0.91631 0.99108 1.20183 0.97190 0.94364 0.93632 1.20936 0.94127 0.97856 0.96193 1.20768 0.99857 0.94459 1.00032 1.17529 0.90754 0.91671 0.96583 1.47743 1.27139 1.20285 1.15110 1.26170 0.89241 0.98184 0.90154 1.70616 1.24673 1.07133 1.24517 1.26120 0.95472 1.00147 0.88607 1.78115 1.16093 0.99082 1.20935 1.20812 0.96733 1.00793 0.94627 1.21022 0.96572 0.94223 0.99646 1.22555 0.95011 0.96654 0.87459 1.23014 1.02373 1.00568 0.91351 1.22148 0.97726 0.97762 0.98636 1.21979 0.98462 0.98109 0.96832 1.23039 1.01192 0.99788 0.95881 0.92950 0.95673 0.97547 0.94177 0.90104 0.84321 0.85368 0.76194 0.76315 0.84952 0.85366 0.91479 0.85511 0.92859 0.92400 0.93240 0.92933 0.92612 0.93112 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.13 13.29 55.43 0.74 -24.39 16 2 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 3 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.49 -12.64 6.49 -34.44 -0.22 -12.87 16 8 H 0.07 1.73 7.16 -52.49 -0.38 1.36 16 9 C 0.19 4.33 4.23 -4.98 -0.02 4.31 16 10 N -0.52 -9.96 4.45 -227.07 -1.01 -10.97 16 11 C 0.08 1.34 5.00 -4.97 -0.02 1.31 16 12 C -0.05 -0.72 5.02 -104.59 -0.53 -1.25 16 13 C -0.07 -0.91 9.71 -39.61 -0.38 -1.29 16 14 C -0.13 -1.45 9.47 -39.41 -0.37 -1.82 16 15 C 0.13 1.56 6.70 -83.59 -0.56 1.00 16 16 N -0.32 -3.91 3.82 -11.81 -0.05 -3.95 16 17 C 0.26 2.67 11.98 -90.37 -1.08 1.58 16 18 N -0.54 -6.28 11.19 -15.75 -0.18 -6.45 16 19 C 0.20 2.14 13.03 -91.76 -1.20 0.94 16 20 N -0.32 -4.04 12.06 29.30 0.35 -3.68 16 21 C -0.11 -1.38 9.68 -39.40 -0.38 -1.77 16 22 C -0.10 -1.21 8.69 -39.61 -0.34 -1.56 16 23 C 0.09 1.62 2.84 -65.67 -0.19 1.44 16 24 C -0.14 -2.56 5.29 -25.03 -0.13 -2.69 16 25 C -0.12 -1.98 6.80 -25.61 -0.17 -2.16 16 26 C -0.12 -1.71 6.80 -25.61 -0.17 -1.89 16 27 C -0.16 -2.57 4.98 -25.07 -0.12 -2.70 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.03 0.63 7.43 -51.93 -0.39 0.25 16 30 H 0.01 0.17 5.56 -51.92 -0.29 -0.12 16 31 H 0.04 0.61 6.30 -51.93 -0.33 0.28 16 32 H 0.08 1.30 7.51 -51.93 -0.39 0.91 16 33 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.13 1.02 6.81 -52.49 -0.36 0.67 16 35 H 0.22 1.35 7.10 -52.49 -0.37 0.98 16 36 H 0.22 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.13 1.63 7.74 -52.49 -0.41 1.22 16 38 H 0.13 1.50 7.96 -52.48 -0.42 1.08 16 39 H 0.07 1.14 7.01 -51.93 -0.36 0.78 16 40 H 0.13 2.85 4.45 -51.93 -0.23 2.62 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.72 7.50 -51.93 -0.39 0.33 16 47 H 0.08 1.40 5.99 -51.93 -0.31 1.09 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -29.81 371.48 -12.28 -42.09 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.71 Total: 4.15 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -6.01 Total: -18.06 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.14 Total: -49.45 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.81 -12.28 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139332382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.948 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds