Wall clock time and date at job start Tue Mar 31 2020 14:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00269 * 2 1 4 4 H 1.48496 * 109.47418 * 270.00172 * 3 2 1 5 5 H 1.48496 * 109.47017 * 30.00513 * 3 2 1 6 6 H 1.48505 * 109.46996 * 149.99949 * 3 2 1 7 7 C 1.37878 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00407 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00207 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47407 * 177.41998 * 9 7 2 11 11 C 1.46906 * 110.99820 * 209.31099 * 10 9 7 12 12 C 1.50696 * 109.46999 * 160.87592 * 11 10 9 13 13 C 1.38282 * 119.93421 * 275.15240 * 12 11 10 14 14 C 1.38119 * 120.06253 * 179.72904 * 13 12 11 15 15 C 1.38828 * 119.93701 * 0.56464 * 14 13 12 16 16 N 1.40203 * 120.06877 * 179.73247 * 15 14 13 17 17 C 1.34722 * 126.83702 * 359.68149 * 16 15 14 18 18 N 1.30853 * 108.02897 * 179.89699 * 17 16 15 19 19 C 1.33265 * 109.84359 * 0.38206 * 18 17 16 20 20 N 1.30746 * 108.99965 * 359.76516 * 19 18 17 21 21 C 1.38834 * 119.86982 * 359.70371 * 15 14 13 22 22 C 1.38126 * 119.92749 * 0.02562 * 21 15 14 23 23 C 1.46895 * 111.00222 * 85.35606 * 10 9 7 24 24 C 1.54968 * 110.92415 * 310.11769 * 23 10 9 25 25 C 1.54266 * 104.15793 * 156.29730 * 24 23 10 26 26 C 1.53873 * 106.64312 * 336.44347 * 25 24 23 27 27 C 1.54268 * 106.59935 * 359.97438 * 26 25 24 28 28 H 0.97000 * 119.99349 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47170 * 57.41255 * 9 7 2 30 30 H 1.09008 * 109.46951 * 297.41593 * 9 7 2 31 31 H 1.09000 * 109.46858 * 280.87872 * 11 10 9 32 32 H 1.09002 * 109.47242 * 40.87809 * 11 10 9 33 33 H 1.08000 * 119.96630 * 359.97438 * 13 12 11 34 34 H 1.08002 * 120.03059 * 180.29191 * 14 13 12 35 35 H 1.07995 * 125.98612 * 0.04365 * 17 16 15 36 36 H 1.07998 * 125.49913 * 179.74139 * 19 18 17 37 37 H 1.07993 * 120.03864 * 179.97438 * 21 15 14 38 38 H 1.08003 * 119.96087 * 179.97438 * 22 21 15 39 39 H 1.09000 * 110.67608 * 186.80850 * 23 10 9 40 40 H 1.08995 * 110.47558 * 37.64075 * 24 23 10 41 41 H 1.08999 * 110.52894 * 274.97493 * 24 23 10 42 42 H 1.09012 * 110.02731 * 217.13616 * 25 24 23 43 43 H 1.08993 * 110.03418 * 95.75775 * 25 24 23 44 44 H 1.08995 * 110.03289 * 119.26749 * 26 25 24 45 45 H 1.09006 * 110.03317 * 240.65064 * 26 25 24 46 46 H 1.08997 * 110.48288 * 142.28398 * 27 26 25 47 47 H 1.09000 * 110.48818 * 264.80064 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2044 -3.6150 -0.0644 11 6 1.6114 -4.7767 -0.7406 12 6 2.7073 -5.7011 -1.2047 13 6 3.3319 -5.4764 -2.4178 14 6 4.3405 -6.3188 -2.8432 15 6 4.7189 -7.3987 -2.0571 16 7 5.7385 -8.2587 -2.4889 17 6 6.4361 -8.1714 -3.6381 18 7 7.2953 -9.1580 -3.6662 19 6 7.1719 -9.8969 -2.5641 20 7 6.2317 -9.3865 -1.8125 21 6 4.0862 -7.6250 -0.8423 22 6 3.0821 -6.7758 -0.4195 23 6 2.6832 -3.9745 1.2770 24 6 3.1667 -2.7194 2.0467 25 6 3.0447 -3.1175 3.5321 26 6 1.9962 -4.2415 3.6024 27 6 1.5163 -4.4876 2.1571 28 1 -0.4849 0.8401 -0.0004 29 1 0.5903 -2.5365 -0.8679 30 1 0.6592 -2.5778 0.9103 31 1 0.9585 -5.3065 -0.0470 32 1 1.0318 -4.4400 -1.6001 33 1 3.0335 -4.6392 -3.0313 34 1 4.8312 -6.1400 -3.7886 35 1 6.3102 -7.4177 -4.4013 36 1 7.7542 -10.7757 -2.3298 37 1 4.3781 -8.4644 -0.2288 38 1 2.5892 -6.9516 0.5253 39 1 3.4770 -4.7189 1.2156 40 1 2.5251 -1.8663 1.8264 41 1 4.2032 -2.4932 1.7963 42 1 2.7152 -2.2620 4.1220 43 1 4.0043 -3.4783 3.9021 44 1 2.4472 -5.1481 4.0057 45 1 1.1582 -3.9319 4.2271 46 1 1.3491 -5.5511 1.9866 47 1 0.6065 -3.9221 1.9556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139332382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:31 Heat of formation + Delta-G solvation = 111.341877 kcal Electronic energy + Delta-G solvation = -27452.889063 eV Core-core repulsion = 23829.894240 eV Total energy + Delta-G solvation = -3622.994823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.30609 -40.78680 -39.64888 -36.33197 -35.27896 -34.30725 -32.66501 -31.84279 -31.36813 -29.69154 -28.91854 -28.14022 -26.04040 -24.45946 -24.09593 -23.57013 -22.15619 -21.92740 -20.95974 -20.05605 -19.37223 -18.37601 -17.33211 -16.86343 -16.73796 -16.67911 -16.46155 -16.25240 -15.68703 -15.48945 -15.10684 -14.98235 -14.60388 -14.43390 -14.34717 -14.06674 -13.88406 -13.37359 -13.22058 -13.03600 -12.90976 -12.80494 -12.42908 -12.31002 -12.14486 -12.01406 -11.94292 -11.79988 -11.69939 -11.51393 -11.30370 -11.17732 -11.15709 -10.95826 -10.93293 -10.46544 -9.98821 -9.27072 -8.82212 -8.09892 -6.13095 -0.27955 0.36441 1.00056 1.18860 1.43147 1.44656 1.54363 1.87991 2.44580 2.71010 3.19514 3.36103 3.42448 3.44664 3.82599 3.83575 3.90249 3.91946 3.99778 4.04938 4.20167 4.37813 4.39315 4.53260 4.59425 4.64325 4.71751 4.75720 4.81209 4.86750 4.95090 4.97535 5.04478 5.06961 5.15077 5.19559 5.21532 5.23484 5.36085 5.38237 5.40890 5.54880 5.56570 5.69399 5.69692 5.77871 5.91556 6.04962 6.19831 6.53858 6.73002 6.95713 6.97943 7.50025 8.98474 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.003033 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.035157 B = 9229.915466 C =10120.806451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.490 4.490 8 H 0.061 0.939 9 C 0.205 3.795 10 N -0.529 5.529 11 C 0.089 3.911 12 C -0.068 4.068 13 C -0.079 4.079 14 C -0.121 4.121 15 C 0.125 3.875 16 N -0.333 5.333 17 C 0.263 3.737 18 N -0.564 5.564 19 C 0.202 3.798 20 N -0.349 5.349 21 C -0.117 4.117 22 C -0.093 4.093 23 C 0.095 3.905 24 C -0.140 4.140 25 C -0.121 4.121 26 C -0.112 4.112 27 C -0.154 4.154 28 H 0.260 0.740 29 H -0.001 1.001 30 H -0.014 1.014 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.259 0.741 36 H 0.252 0.748 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.950 -16.205 -2.356 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.194 4.194 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.529 4.529 8 H 0.079 0.921 9 C 0.079 3.921 10 N -0.251 5.251 11 C -0.039 4.039 12 C -0.069 4.069 13 C -0.098 4.098 14 C -0.142 4.142 15 C 0.033 3.967 16 N -0.117 5.117 17 C -0.031 4.031 18 N -0.290 5.290 19 C -0.099 4.099 20 N -0.176 5.176 21 C -0.137 4.137 22 C -0.112 4.112 23 C -0.014 4.014 24 C -0.177 4.177 25 C -0.159 4.159 26 C -0.150 4.150 27 C -0.194 4.194 28 H 0.069 0.931 29 H 0.017 0.983 30 H 0.004 0.996 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.158 0.842 34 H 0.180 0.820 35 H 0.274 0.726 36 H 0.268 0.732 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.236 -16.297 -2.202 18.861 hybrid contribution -0.777 1.074 0.420 1.390 sum 8.459 -15.223 -1.782 17.506 Atomic orbital electron populations 1.70063 1.07391 1.27352 1.52753 1.25705 0.95500 1.02333 0.95889 0.85641 0.78773 0.79634 0.78172 1.20277 1.21419 1.19099 1.21392 0.93486 0.90678 1.47330 0.92078 1.19510 0.89847 0.88577 0.94196 1.62152 1.39105 1.05609 1.18257 1.21092 0.93429 0.90839 0.98535 1.19981 0.97444 0.94741 0.94751 1.21035 0.94558 0.98305 0.95909 1.21008 0.98953 0.93220 1.00975 1.17699 0.90609 0.91855 0.96546 1.47792 1.27592 1.20485 1.15809 1.26991 0.87932 0.98219 0.89984 1.70674 1.25447 1.07884 1.25019 1.26824 0.94753 1.00486 0.87885 1.78083 1.17293 0.99951 1.22226 1.20862 0.96881 1.00857 0.95095 1.21036 0.96534 0.93765 0.99825 1.22567 0.95787 0.96304 0.86707 1.22884 1.01011 0.99814 0.94026 1.22117 0.99310 0.98186 0.96267 1.21984 0.98324 0.98817 0.95847 1.22949 0.99199 1.00575 0.96637 0.93089 0.98324 0.99597 0.93589 0.91074 0.84248 0.81992 0.72560 0.73237 0.84915 0.84470 0.90043 0.89469 0.93373 0.92849 0.91040 0.90182 0.92379 0.90804 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 13.29 21.45 0.28 -53.77 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.95 43.19 29.54 68.60 2.03 45.21 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.49 -25.86 6.49 25.60 0.17 -25.70 16 8 H 0.06 3.23 7.16 -2.91 -0.02 3.21 16 9 C 0.20 9.94 4.23 85.56 0.36 10.30 16 10 N -0.53 -20.53 4.45 -872.33 -3.88 -24.41 16 11 C 0.09 2.83 5.00 85.55 0.43 3.26 16 12 C -0.07 -1.81 5.02 -19.85 -0.10 -1.91 16 13 C -0.08 -1.89 9.71 22.25 0.22 -1.67 16 14 C -0.12 -2.38 9.47 22.38 0.21 -2.17 16 15 C 0.13 2.83 6.70 38.09 0.26 3.08 16 16 N -0.33 -7.41 3.82 -191.27 -0.73 -8.14 16 17 C 0.26 4.69 11.98 180.26 2.16 6.85 16 18 N -0.56 -11.66 11.19 -203.73 -2.28 -13.94 16 19 C 0.20 3.92 13.03 180.75 2.35 6.27 16 20 N -0.35 -8.32 12.06 -61.21 -0.74 -9.06 16 21 C -0.12 -2.77 9.68 22.39 0.22 -2.55 16 22 C -0.09 -2.22 8.69 22.25 0.19 -2.03 16 23 C 0.10 3.30 2.84 46.24 0.13 3.43 16 24 C -0.14 -5.28 5.29 31.70 0.17 -5.12 16 25 C -0.12 -3.68 6.80 31.32 0.21 -3.47 16 26 C -0.11 -3.09 6.80 31.32 0.21 -2.88 16 27 C -0.15 -4.86 4.98 31.67 0.16 -4.70 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.00 -0.07 7.43 -2.39 -0.02 -0.09 16 30 H -0.01 -0.71 5.56 -2.38 -0.01 -0.72 16 31 H 0.05 1.40 6.30 -2.39 -0.02 1.38 16 32 H 0.07 2.37 7.51 -2.39 -0.02 2.35 16 33 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.16 1.97 6.81 -2.91 -0.02 1.95 16 35 H 0.26 2.13 7.10 -2.91 -0.02 2.11 16 36 H 0.25 2.69 8.06 -2.91 -0.02 2.66 16 37 H 0.13 3.10 7.74 -2.91 -0.02 3.08 16 38 H 0.14 2.95 7.96 -2.91 -0.02 2.93 16 39 H 0.08 2.63 7.01 -2.39 -0.02 2.61 16 40 H 0.09 4.04 4.45 -2.39 -0.01 4.03 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.65 8.14 -2.38 -0.02 1.64 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.58 8.14 -2.38 -0.02 1.57 16 46 H 0.07 1.96 7.50 -2.39 -0.02 1.94 16 47 H 0.05 1.74 5.99 -2.39 -0.01 1.72 16 Total: -1.00 -66.16 371.48 3.47 -62.69 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.98 Total: 19.78 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 7.81 Total: -18.37 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -7.34 Total: -109.32 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -66.16 3.47 -62.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139332382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.034 kcal (2) G-P(sol) polarization free energy of solvation -66.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds