Wall clock time and date at job start Tue Mar 31 2020 14:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00051 * 2 1 4 4 H 1.48499 * 109.46837 * 239.99896 * 3 2 1 5 5 H 1.48496 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46797 * 120.00058 * 3 2 1 7 7 C 1.37877 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99604 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00556 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47233 * 185.63945 * 9 7 2 11 11 C 1.46895 * 110.99964 * 204.85252 * 10 9 7 12 12 C 1.50703 * 109.47241 * 158.80261 * 11 10 9 13 13 C 1.38140 * 120.03134 * 107.08895 * 12 11 10 14 14 C 1.38256 * 120.06570 * 179.72134 * 13 12 11 15 15 C 1.38303 * 120.13304 * 0.55245 * 14 13 12 16 16 C 1.38096 * 120.06314 * 359.72557 * 15 14 13 17 17 C 1.38806 * 120.03436 * 287.36143 * 12 11 10 18 18 N 1.40198 * 120.06680 * 0.02747 * 17 12 11 19 19 C 1.34730 * 126.84045 * 183.21172 * 18 17 12 20 20 N 1.30849 * 108.02999 * 179.88728 * 19 18 17 21 21 C 1.33257 * 109.84451 * 0.38349 * 20 19 18 22 22 N 1.30752 * 109.00274 * 359.75791 * 21 20 19 23 23 C 1.46905 * 111.00221 * 80.89848 * 10 9 7 24 24 C 1.55234 * 110.57747 * 307.87028 * 23 10 9 25 25 C 1.54896 * 102.58693 * 203.33892 * 24 23 10 26 26 C 1.54263 * 104.31087 * 37.93065 * 25 24 23 27 27 C 1.53872 * 106.59975 * 336.32645 * 26 25 24 28 28 H 0.97004 * 120.00147 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46958 * 65.63398 * 9 7 2 30 30 H 1.09007 * 109.46750 * 305.63730 * 9 7 2 31 31 H 1.08999 * 109.47129 * 278.80412 * 11 10 9 32 32 H 1.09001 * 109.47400 * 38.80623 * 11 10 9 33 33 H 1.08009 * 119.96705 * 359.97438 * 13 12 11 34 34 H 1.08003 * 119.93622 * 180.29779 * 14 13 12 35 35 H 1.07997 * 119.97031 * 179.74836 * 15 14 13 36 36 H 1.08002 * 120.03096 * 180.02562 * 16 15 14 37 37 H 1.07999 * 125.98608 * 0.02562 * 19 18 17 38 38 H 1.08003 * 125.50487 * 179.78279 * 21 20 19 39 39 H 1.08999 * 110.43134 * 70.45738 * 23 10 9 40 40 H 1.08999 * 110.89889 * 85.05327 * 24 23 10 41 41 H 1.08998 * 110.76801 * 321.56943 * 24 23 10 42 42 H 1.09004 * 110.48136 * 279.18993 * 25 24 23 43 43 H 1.08999 * 110.48959 * 156.68133 * 25 24 23 44 44 H 1.09005 * 110.02897 * 95.60857 * 26 25 24 45 45 H 1.09004 * 110.03272 * 216.98663 * 26 25 24 46 46 H 1.09009 * 110.02831 * 119.28445 * 27 26 25 47 47 H 1.09005 * 110.03403 * 240.65791 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.1997 -3.6125 0.1340 11 6 1.6449 -4.8490 -0.4326 12 6 2.7673 -5.8013 -0.7558 13 6 2.9722 -6.9200 0.0283 14 6 3.9981 -7.7971 -0.2710 15 6 4.8291 -7.5517 -1.3489 16 6 4.6328 -6.4320 -2.1330 17 6 3.5997 -5.5523 -1.8383 18 7 3.3981 -4.4144 -2.6322 19 6 4.0804 -4.0730 -3.7426 20 7 3.5883 -2.9460 -4.1899 21 6 2.6027 -2.5349 -3.3929 22 7 2.4486 -3.4005 -2.4251 23 6 2.5885 -3.8047 1.5376 24 6 3.0814 -2.4685 2.1551 25 6 3.9750 -2.9472 3.3263 26 6 4.6918 -4.1962 2.7732 27 6 3.8103 -4.7413 1.6359 28 1 -0.4850 0.8401 0.0004 29 1 0.7025 -2.6013 -0.9381 30 1 0.5504 -2.5150 0.8333 31 1 0.9734 -5.3110 0.2911 32 1 1.0928 -4.6158 -1.3431 33 1 2.3278 -7.1117 0.8736 34 1 4.1534 -8.6737 0.3406 35 1 5.6322 -8.2365 -1.5779 36 1 5.2818 -6.2411 -2.9749 37 1 4.8901 -4.6326 -4.1871 38 1 2.0241 -1.6326 -3.5252 39 1 1.7535 -4.2053 2.1123 40 1 2.2428 -1.8786 2.5252 41 1 3.6652 -1.9002 1.4311 42 1 3.3638 -3.2093 4.1899 43 1 4.6997 -2.1778 3.5924 44 1 5.6735 -3.9225 2.3863 45 1 4.7957 -4.9453 3.5581 46 1 4.3643 -4.7324 0.6971 47 1 3.4863 -5.7559 1.8681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139421547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:35 Heat of formation + Delta-G solvation = 147.109381 kcal Electronic energy + Delta-G solvation = -29606.118215 eV Core-core repulsion = 25984.674388 eV Total energy + Delta-G solvation = -3621.443827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.80645 -39.56141 -37.87423 -34.83414 -33.78982 -32.76000 -31.36521 -30.64775 -29.23609 -28.19565 -27.14376 -26.79217 -24.34445 -23.68596 -22.17205 -21.26173 -20.92698 -20.41428 -19.73289 -18.99258 -17.89190 -16.47025 -15.69695 -15.66073 -15.31904 -15.15872 -14.86220 -14.62668 -14.38202 -13.92551 -13.69577 -13.56155 -13.31990 -12.83447 -12.73698 -12.57906 -12.53898 -11.99278 -11.84929 -11.41181 -11.12614 -11.00539 -10.84749 -10.73220 -10.62595 -10.52468 -10.40655 -10.20658 -10.10880 -10.02231 -9.87928 -9.47028 -9.35506 -9.20472 -8.95112 -8.65938 -8.28866 -8.02330 -7.09103 -5.90508 -3.87219 0.98723 1.35354 2.43272 2.69992 3.37646 3.42370 3.45777 3.48476 3.82621 4.50612 4.57352 4.68337 4.83741 4.95168 5.08208 5.20598 5.21250 5.30068 5.30508 5.32872 5.44490 5.54926 5.65902 5.70589 5.87502 5.95130 6.01239 6.08977 6.18710 6.21718 6.29700 6.38001 6.39930 6.43964 6.44836 6.52902 6.58484 6.65260 6.70567 6.80753 6.88113 7.03370 7.12087 7.28644 7.40252 7.47496 7.52539 7.98139 8.29551 8.42577 8.56553 8.70245 9.17661 9.72883 11.19364 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.006129 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.882837 B = 4567.493200 C = 6098.220064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.053 3.947 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.477 4.477 8 H 0.061 0.939 9 C 0.206 3.794 10 N -0.504 5.504 11 C 0.096 3.904 12 C -0.055 4.055 13 C -0.093 4.093 14 C -0.131 4.131 15 C -0.104 4.104 16 C -0.143 4.143 17 C 0.173 3.827 18 N -0.328 5.328 19 C 0.232 3.768 20 N -0.540 5.540 21 C 0.192 3.808 22 N -0.226 5.226 23 C 0.089 3.911 24 C -0.098 4.098 25 C -0.132 4.132 26 C -0.119 4.119 27 C -0.115 4.115 28 H 0.258 0.742 29 H 0.031 0.969 30 H -0.012 1.012 31 H 0.024 0.976 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.209 0.791 38 H 0.215 0.785 39 H 0.025 0.975 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.499 -15.404 -1.076 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.147 4.147 3 Si 0.713 3.287 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.081 3.919 10 N -0.228 5.228 11 C -0.032 4.032 12 C -0.058 4.058 13 C -0.112 4.112 14 C -0.150 4.150 15 C -0.123 4.123 16 C -0.164 4.164 17 C 0.079 3.921 18 N -0.113 5.113 19 C -0.063 4.063 20 N -0.266 5.266 21 C -0.110 4.110 22 N -0.048 5.048 23 C -0.020 4.020 24 C -0.136 4.136 25 C -0.170 4.170 26 C -0.157 4.157 27 C -0.152 4.152 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.006 0.994 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.225 0.775 38 H 0.231 0.769 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.286 -14.830 -1.093 17.023 hybrid contribution 0.023 0.698 0.555 0.892 sum 8.309 -14.132 -0.538 16.403 Atomic orbital electron populations 1.69942 1.05823 1.26355 1.52182 1.24901 0.94680 0.98659 0.96455 0.86779 0.79567 0.83814 0.78559 1.20393 1.21629 1.20545 1.21116 0.93085 0.89534 1.47820 0.92140 1.19639 0.89391 0.87093 0.95760 1.62108 1.43701 1.02949 1.14035 1.21051 0.91662 0.90332 1.00183 1.19853 0.97203 0.95717 0.92994 1.20966 0.98093 0.93603 0.98519 1.21089 0.96092 0.99785 0.98052 1.20810 0.99516 0.96688 0.95247 1.20729 0.97915 0.95688 1.02099 1.17341 0.96686 0.85299 0.92752 1.47903 1.26691 1.17106 1.19598 1.25895 0.98653 0.94450 0.87350 1.70532 1.13542 1.11342 1.31205 1.26229 0.95615 1.00278 0.88907 1.78951 1.08950 0.97612 1.19289 1.22461 0.94679 0.95510 0.89378 1.22708 0.99083 0.96248 0.95519 1.22453 0.98863 0.96886 0.98811 1.22081 0.98771 0.97267 0.97603 1.22470 0.96867 0.97641 0.98259 0.93229 0.95137 0.99402 0.95770 0.89086 0.85650 0.85966 0.85578 0.85642 0.77481 0.76857 0.95767 0.91385 0.89209 0.92826 0.92593 0.92724 0.93129 0.91381 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 3 Si 0.88 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.48 -12.52 6.95 -34.44 -0.24 -12.76 16 8 H 0.06 1.65 6.03 -52.48 -0.32 1.33 16 9 C 0.21 5.07 3.65 -4.98 -0.02 5.05 16 10 N -0.50 -10.32 3.15 -227.31 -0.72 -11.03 16 11 C 0.10 1.74 4.19 -4.98 -0.02 1.72 16 12 C -0.05 -0.83 3.36 -104.45 -0.35 -1.18 16 13 C -0.09 -1.14 6.82 -39.61 -0.27 -1.41 16 14 C -0.13 -1.34 10.04 -39.55 -0.40 -1.73 16 15 C -0.10 -1.01 10.04 -39.61 -0.40 -1.41 16 16 C -0.14 -1.62 9.47 -39.40 -0.37 -1.99 16 17 C 0.17 2.56 6.53 -83.59 -0.55 2.01 16 18 N -0.33 -5.44 3.81 -11.81 -0.05 -5.48 16 19 C 0.23 3.42 11.98 -90.37 -1.08 2.34 16 20 N -0.54 -9.44 11.19 -15.74 -0.18 -9.62 16 21 C 0.19 3.66 13.03 -91.77 -1.20 2.46 16 22 N -0.23 -4.43 6.37 29.30 0.19 -4.25 16 23 C 0.09 1.69 2.43 -65.87 -0.16 1.53 16 24 C -0.10 -1.97 4.54 -24.55 -0.11 -2.08 16 25 C -0.13 -2.15 6.82 -25.07 -0.17 -2.32 16 26 C -0.12 -1.78 6.80 -25.62 -0.17 -1.95 16 27 C -0.11 -1.83 4.45 -25.62 -0.11 -1.95 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.81 6.69 -51.93 -0.35 0.46 16 30 H -0.01 -0.33 7.92 -51.93 -0.41 -0.74 16 31 H 0.02 0.42 7.65 -51.93 -0.40 0.03 16 32 H 0.09 1.80 5.92 -51.93 -0.31 1.49 16 33 H 0.13 1.42 7.60 -52.48 -0.40 1.02 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.09 6.82 -52.49 -0.36 0.73 16 37 H 0.21 2.02 7.11 -52.49 -0.37 1.64 16 38 H 0.22 3.93 8.06 -52.48 -0.42 3.50 16 39 H 0.02 0.48 7.97 -51.93 -0.41 0.06 16 40 H 0.07 1.52 7.81 -51.93 -0.41 1.12 16 41 H 0.09 2.03 5.74 -51.93 -0.30 1.73 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.20 6.64 -51.92 -0.34 0.85 16 47 H 0.05 0.76 5.80 -51.93 -0.30 0.45 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -30.43 359.97 -12.10 -42.52 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.77 Total: 3.56 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -5.72 Total: -12.32 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.01 Total: -55.71 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.43 -12.10 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139421547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.632 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds