Wall clock time and date at job start Tue Mar 31 2020 14:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00051 * 2 1 4 4 H 1.48499 * 109.46837 * 239.99896 * 3 2 1 5 5 H 1.48496 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46797 * 120.00058 * 3 2 1 7 7 C 1.37877 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99604 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00556 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47233 * 185.63945 * 9 7 2 11 11 C 1.46895 * 110.99964 * 204.85252 * 10 9 7 12 12 C 1.50703 * 109.47241 * 158.80261 * 11 10 9 13 13 C 1.38140 * 120.03134 * 107.08895 * 12 11 10 14 14 C 1.38256 * 120.06570 * 179.72134 * 13 12 11 15 15 C 1.38303 * 120.13304 * 0.55245 * 14 13 12 16 16 C 1.38096 * 120.06314 * 359.72557 * 15 14 13 17 17 C 1.38806 * 120.03436 * 287.36143 * 12 11 10 18 18 N 1.40198 * 120.06680 * 0.02747 * 17 12 11 19 19 C 1.34730 * 126.84045 * 183.21172 * 18 17 12 20 20 N 1.30849 * 108.02999 * 179.88728 * 19 18 17 21 21 C 1.33257 * 109.84451 * 0.38349 * 20 19 18 22 22 N 1.30752 * 109.00274 * 359.75791 * 21 20 19 23 23 C 1.46905 * 111.00221 * 80.89848 * 10 9 7 24 24 C 1.55234 * 110.57747 * 307.87028 * 23 10 9 25 25 C 1.54896 * 102.58693 * 203.33892 * 24 23 10 26 26 C 1.54263 * 104.31087 * 37.93065 * 25 24 23 27 27 C 1.53872 * 106.59975 * 336.32645 * 26 25 24 28 28 H 0.97004 * 120.00147 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46958 * 65.63398 * 9 7 2 30 30 H 1.09007 * 109.46750 * 305.63730 * 9 7 2 31 31 H 1.08999 * 109.47129 * 278.80412 * 11 10 9 32 32 H 1.09001 * 109.47400 * 38.80623 * 11 10 9 33 33 H 1.08009 * 119.96705 * 359.97438 * 13 12 11 34 34 H 1.08003 * 119.93622 * 180.29779 * 14 13 12 35 35 H 1.07997 * 119.97031 * 179.74836 * 15 14 13 36 36 H 1.08002 * 120.03096 * 180.02562 * 16 15 14 37 37 H 1.07999 * 125.98608 * 0.02562 * 19 18 17 38 38 H 1.08003 * 125.50487 * 179.78279 * 21 20 19 39 39 H 1.08999 * 110.43134 * 70.45738 * 23 10 9 40 40 H 1.08999 * 110.89889 * 85.05327 * 24 23 10 41 41 H 1.08998 * 110.76801 * 321.56943 * 24 23 10 42 42 H 1.09004 * 110.48136 * 279.18993 * 25 24 23 43 43 H 1.08999 * 110.48959 * 156.68133 * 25 24 23 44 44 H 1.09005 * 110.02897 * 95.60857 * 26 25 24 45 45 H 1.09004 * 110.03272 * 216.98663 * 26 25 24 46 46 H 1.09009 * 110.02831 * 119.28445 * 27 26 25 47 47 H 1.09005 * 110.03403 * 240.65791 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.1997 -3.6125 0.1340 11 6 1.6449 -4.8490 -0.4326 12 6 2.7673 -5.8013 -0.7558 13 6 2.9722 -6.9200 0.0283 14 6 3.9981 -7.7971 -0.2710 15 6 4.8291 -7.5517 -1.3489 16 6 4.6328 -6.4320 -2.1330 17 6 3.5997 -5.5523 -1.8383 18 7 3.3981 -4.4144 -2.6322 19 6 4.0804 -4.0730 -3.7426 20 7 3.5883 -2.9460 -4.1899 21 6 2.6027 -2.5349 -3.3929 22 7 2.4486 -3.4005 -2.4251 23 6 2.5885 -3.8047 1.5376 24 6 3.0814 -2.4685 2.1551 25 6 3.9750 -2.9472 3.3263 26 6 4.6918 -4.1962 2.7732 27 6 3.8103 -4.7413 1.6359 28 1 -0.4850 0.8401 0.0004 29 1 0.7025 -2.6013 -0.9381 30 1 0.5504 -2.5150 0.8333 31 1 0.9734 -5.3110 0.2911 32 1 1.0928 -4.6158 -1.3431 33 1 2.3278 -7.1117 0.8736 34 1 4.1534 -8.6737 0.3406 35 1 5.6322 -8.2365 -1.5779 36 1 5.2818 -6.2411 -2.9749 37 1 4.8901 -4.6326 -4.1871 38 1 2.0241 -1.6326 -3.5252 39 1 1.7535 -4.2053 2.1123 40 1 2.2428 -1.8786 2.5252 41 1 3.6652 -1.9002 1.4311 42 1 3.3638 -3.2093 4.1899 43 1 4.6997 -2.1778 3.5924 44 1 5.6735 -3.9225 2.3863 45 1 4.7957 -4.9453 3.5581 46 1 4.3643 -4.7324 0.6971 47 1 3.4863 -5.7559 1.8681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139421547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:34 Heat of formation + Delta-G solvation = 132.970244 kcal Electronic energy + Delta-G solvation = -29606.731334 eV Core-core repulsion = 25984.674388 eV Total energy + Delta-G solvation = -3622.056946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.06630 -40.72066 -39.22845 -36.33019 -34.95572 -34.65376 -32.71394 -31.96166 -30.30463 -29.71895 -28.70215 -28.36718 -25.89342 -24.77268 -23.61386 -22.97775 -22.02719 -21.57492 -21.13144 -20.52296 -18.98668 -18.39730 -16.99453 -16.88652 -16.60485 -16.51001 -16.40693 -16.15103 -15.61498 -15.28822 -15.05016 -14.81468 -14.63938 -14.33493 -14.09196 -13.96364 -13.74717 -13.73440 -13.18863 -12.86681 -12.84044 -12.64467 -12.44379 -12.20678 -12.01862 -11.98136 -11.78681 -11.64374 -11.59320 -11.53238 -11.21394 -11.15124 -10.95226 -10.75282 -10.57676 -10.45562 -9.62744 -9.08751 -8.82205 -8.06440 -6.09125 -0.02406 0.44642 1.31077 1.38013 1.39099 1.46352 1.56994 2.11661 2.43425 2.87799 3.24581 3.44568 3.50628 3.64581 3.79758 3.86914 3.94139 4.09058 4.11107 4.25615 4.30961 4.39627 4.53384 4.59967 4.65783 4.68987 4.73977 4.79153 4.85990 4.90163 4.93103 5.10850 5.13510 5.16396 5.23550 5.26232 5.32067 5.39192 5.51966 5.53766 5.56981 5.60352 5.60715 5.63686 5.68805 5.84347 5.95455 6.25911 6.34026 6.63786 6.81597 7.02541 7.25530 7.54715 9.02852 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.006129 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.882837 B = 4567.493200 C = 6098.220064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.003 3.997 3 Si 0.943 3.057 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.463 4.463 8 H 0.051 0.949 9 C 0.231 3.769 10 N -0.501 5.501 11 C 0.102 3.898 12 C -0.077 4.077 13 C -0.099 4.099 14 C -0.118 4.118 15 C -0.090 4.090 16 C -0.135 4.135 17 C 0.140 3.860 18 N -0.330 5.330 19 C 0.243 3.757 20 N -0.562 5.562 21 C 0.173 3.827 22 N -0.264 5.264 23 C 0.084 3.916 24 C -0.099 4.099 25 C -0.124 4.124 26 C -0.112 4.112 27 C -0.097 4.097 28 H 0.257 0.743 29 H 0.005 0.995 30 H -0.054 1.054 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.131 0.869 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.262 0.738 38 H 0.203 0.797 39 H 0.014 0.986 40 H 0.030 0.970 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.513 -18.884 -0.563 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.502 4.502 8 H 0.069 0.931 9 C 0.105 3.895 10 N -0.224 5.224 11 C -0.026 4.026 12 C -0.080 4.080 13 C -0.118 4.118 14 C -0.136 4.136 15 C -0.109 4.109 16 C -0.156 4.156 17 C 0.047 3.953 18 N -0.114 5.114 19 C -0.051 4.051 20 N -0.289 5.289 21 C -0.130 4.130 22 N -0.088 5.088 23 C -0.025 4.025 24 C -0.137 4.137 25 C -0.162 4.162 26 C -0.150 4.150 27 C -0.135 4.135 28 H 0.066 0.934 29 H 0.023 0.977 30 H -0.036 1.036 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.175 0.825 35 H 0.185 0.815 36 H 0.174 0.826 37 H 0.277 0.723 38 H 0.220 0.780 39 H 0.032 0.968 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.325 -18.346 -0.568 22.109 hybrid contribution -1.203 1.594 0.395 2.036 sum 11.122 -16.752 -0.173 20.109 Atomic orbital electron populations 1.70073 1.07251 1.26934 1.53779 1.25601 0.95352 1.01828 0.96506 0.85830 0.78406 0.80135 0.78615 1.20014 1.21307 1.19975 1.21171 0.92412 0.90317 1.46262 0.93116 1.19169 0.89045 0.88778 0.92544 1.62071 1.42072 1.03068 1.15207 1.20913 0.93242 0.89950 0.98533 1.19593 0.97064 0.96435 0.94935 1.21083 0.99167 0.93115 0.98411 1.21504 0.94340 0.99694 0.98068 1.21338 0.99650 0.96080 0.93822 1.21145 0.96566 0.94945 1.02939 1.17785 0.98553 0.85703 0.93252 1.47977 1.26089 1.17064 1.20316 1.26836 0.98480 0.93539 0.86223 1.70488 1.13724 1.13002 1.31649 1.26128 0.96636 1.00431 0.89773 1.78860 1.10873 0.98855 1.20205 1.22566 0.95926 0.95894 0.88128 1.22532 0.98182 0.96212 0.96739 1.22395 0.98467 0.98009 0.97359 1.22073 0.98251 0.96929 0.97779 1.22315 0.94920 0.97865 0.98382 0.93384 0.97738 1.03597 0.96128 0.91863 0.85075 0.82521 0.81490 0.82603 0.72264 0.78005 0.96839 0.95147 0.92146 0.91577 0.91734 0.92085 0.89974 0.92523 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.52 13.29 21.45 0.28 -57.23 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.94 46.14 29.54 68.60 2.03 48.16 16 4 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.46 -26.01 6.95 25.60 0.18 -25.83 16 8 H 0.05 2.93 6.03 -2.91 -0.02 2.91 16 9 C 0.23 12.42 3.65 85.56 0.31 12.73 16 10 N -0.50 -21.81 3.15 -873.08 -2.75 -24.56 16 11 C 0.10 3.91 4.19 85.56 0.36 4.26 16 12 C -0.08 -2.29 3.36 -19.75 -0.07 -2.35 16 13 C -0.10 -2.15 6.82 22.25 0.15 -2.00 16 14 C -0.12 -1.74 10.04 22.29 0.22 -1.52 16 15 C -0.09 -1.19 10.04 22.25 0.22 -0.97 16 16 C -0.14 -2.42 9.47 22.38 0.21 -2.21 16 17 C 0.14 3.89 6.53 38.09 0.25 4.14 16 18 N -0.33 -10.89 3.81 -191.26 -0.73 -11.62 16 19 C 0.24 6.84 11.98 180.26 2.16 9.00 16 20 N -0.56 -19.95 11.19 -203.73 -2.28 -22.23 16 21 C 0.17 7.06 13.03 180.75 2.35 9.42 16 22 N -0.26 -11.06 6.37 -61.21 -0.39 -11.45 16 23 C 0.08 3.28 2.43 46.11 0.11 3.39 16 24 C -0.10 -4.15 4.54 32.01 0.15 -4.00 16 25 C -0.12 -3.89 6.82 31.67 0.22 -3.67 16 26 C -0.11 -2.98 6.80 31.32 0.21 -2.77 16 27 C -0.10 -2.92 4.45 31.32 0.14 -2.78 16 28 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.00 0.27 6.69 -2.39 -0.02 0.25 16 30 H -0.05 -3.26 7.92 -2.38 -0.02 -3.28 16 31 H 0.02 0.77 7.65 -2.39 -0.02 0.76 16 32 H 0.06 2.75 5.92 -2.39 -0.01 2.74 16 33 H 0.13 2.64 7.60 -2.91 -0.02 2.62 16 34 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 36 H 0.16 1.77 6.82 -2.91 -0.02 1.75 16 37 H 0.26 3.96 7.11 -2.91 -0.02 3.94 16 38 H 0.20 8.33 8.06 -2.91 -0.02 8.30 16 39 H 0.01 0.56 7.97 -2.39 -0.02 0.54 16 40 H 0.03 1.45 7.81 -2.39 -0.02 1.43 16 41 H 0.06 2.87 5.74 -2.39 -0.01 2.85 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.06 1.87 6.64 -2.38 -0.02 1.86 16 47 H 0.08 1.93 5.80 -2.38 -0.01 1.92 16 Total: -1.00 -74.00 359.97 4.78 -69.22 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.97 Total: 14.21 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 7.64 Total: -4.51 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -5.87 Total: -127.09 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -74.00 4.78 -69.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139421547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.194 kcal (2) G-P(sol) polarization free energy of solvation -74.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds