Wall clock time and date at job start Tue Mar 31 2020 15:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47098 * 2 1 4 4 N 1.46901 * 109.47117 * 174.77932 * 3 2 1 5 5 C 1.46903 * 110.99700 * 199.91562 * 4 3 2 6 6 C 1.50694 * 109.47290 * 66.04865 * 5 4 3 7 7 H 1.08004 * 120.00070 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00311 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99669 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00198 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47239 * 90.00033 * 10 8 6 12 12 H 1.48496 * 109.47185 * 210.00038 * 10 8 6 13 13 H 1.48496 * 109.47348 * 330.00170 * 10 8 6 14 14 C 1.46896 * 110.99861 * 75.96302 * 4 3 2 15 15 C 1.50706 * 109.47202 * 199.68350 * 14 4 3 16 16 C 1.38036 * 120.05958 * 7.04790 * 15 14 4 17 17 C 1.38297 * 120.12192 * 180.27638 * 16 15 14 18 18 C 1.38352 * 120.24410 * 359.48662 * 17 16 15 19 19 C 1.37987 * 120.12217 * 0.51266 * 18 17 16 20 20 C 1.39328 * 120.06142 * 187.06329 * 15 14 4 21 21 C 1.48368 * 120.12324 * 359.96661 * 20 15 14 22 22 C 1.39725 * 120.83384 * 304.43460 * 21 20 15 23 23 N 1.32132 * 119.03804 * 179.71852 * 22 21 20 24 24 C 1.32524 * 120.87213 * 0.57410 * 23 22 21 25 25 N 1.38352 * 119.07643 * 179.72744 * 24 23 22 26 26 N 1.32537 * 121.85126 * 359.69776 * 24 23 22 27 27 C 1.32128 * 120.86617 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.46378 * 184.89636 * 1 2 3 29 29 H 1.08990 * 109.47173 * 304.89427 * 1 2 3 30 30 H 1.09003 * 109.47186 * 64.89914 * 1 2 3 31 31 H 1.09002 * 109.47298 * 240.00523 * 2 1 3 32 32 H 1.09000 * 109.47633 * 120.00527 * 2 1 3 33 33 H 1.09002 * 109.46858 * 54.78465 * 3 2 1 34 34 H 1.08997 * 109.46855 * 294.78169 * 3 2 1 35 35 H 1.09002 * 109.46548 * 186.04684 * 5 4 3 36 36 H 1.08999 * 109.47084 * 306.04371 * 5 4 3 37 37 H 0.96998 * 119.99618 * 179.97438 * 9 8 6 38 38 H 1.08999 * 109.47621 * 79.68248 * 14 4 3 39 39 H 1.08996 * 109.47420 * 319.68607 * 14 4 3 40 40 H 1.08002 * 119.94037 * 359.97438 * 16 15 14 41 41 H 1.07994 * 119.87866 * 179.74629 * 17 16 15 42 42 H 1.07997 * 119.93603 * 180.28257 * 18 17 16 43 43 H 1.08003 * 120.06566 * 179.76984 * 19 18 17 44 44 H 1.07993 * 120.48037 * 359.97438 * 22 21 20 45 45 H 0.96998 * 120.00238 * 179.97438 * 25 24 23 46 46 H 0.96997 * 119.99834 * 359.96965 * 25 24 23 47 47 H 1.07989 * 120.47357 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5036 1.4445 0.1260 5 6 3.9896 2.7482 0.5973 6 6 3.5083 2.9846 2.0056 7 1 2.9022 2.2406 2.5012 8 6 3.8424 4.1502 2.6618 9 7 4.5816 5.0556 2.0589 10 14 3.2463 4.4430 4.4077 11 1 4.2452 3.9088 5.3680 12 1 3.0725 5.9003 4.6337 13 1 1.9472 3.7524 4.6096 14 6 4.1418 1.0723 -1.1437 15 6 5.5541 0.6165 -0.8814 16 6 6.0011 0.4614 0.4153 17 6 7.2986 0.0486 0.6575 18 6 8.1523 -0.2213 -0.3972 19 6 7.7161 -0.0697 -1.6975 20 6 6.4111 0.3510 -1.9474 21 6 5.9362 0.5155 -3.3434 22 6 4.7965 -0.1543 -3.7957 23 7 4.4019 0.0223 -5.0443 24 6 5.0780 0.8125 -5.8658 25 7 4.6349 0.9663 -7.1674 26 7 6.1665 1.4601 -5.4753 27 6 6.6210 1.3391 -4.2406 28 1 -0.3632 -1.0240 0.0877 29 1 -0.3633 0.5878 0.8428 30 1 -0.3634 0.4360 -0.9306 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6024 1.9826 0.8396 34 1 1.7550 1.9286 -0.9330 35 1 5.0795 2.7576 0.5794 36 1 3.6087 3.5350 -0.0538 37 1 4.8163 5.8758 2.5204 38 1 4.1562 1.9350 -1.8097 39 1 3.5794 0.2632 -1.6096 40 1 5.3378 0.6675 1.2424 41 1 7.6454 -0.0674 1.6736 42 1 9.1632 -0.5477 -0.2024 43 1 8.3845 -0.2771 -2.5201 44 1 4.2436 -0.8037 -3.1332 45 1 5.1193 1.5416 -7.7799 46 1 3.8398 0.4986 -7.4674 47 1 7.5082 1.8700 -3.9291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140324486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:33 Heat of formation + Delta-G solvation = 75.873502 kcal Electronic energy + Delta-G solvation = -27643.064678 eV Core-core repulsion = 24018.531831 eV Total energy + Delta-G solvation = -3624.532847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.00130 -39.06595 -36.87898 -35.14162 -33.70776 -33.18887 -32.63427 -32.03680 -30.52610 -28.50112 -27.36029 -25.93743 -24.76856 -23.94437 -23.63175 -21.61425 -21.36971 -20.65952 -19.58039 -18.12544 -18.04849 -16.70317 -16.40253 -15.63776 -15.34198 -15.26797 -14.76026 -14.74511 -14.50700 -14.41614 -13.94615 -13.66303 -13.46525 -13.40735 -13.14266 -12.62500 -12.60386 -12.07262 -11.82942 -11.59085 -11.49998 -11.40231 -11.15800 -11.02390 -10.85506 -10.82975 -10.70584 -10.53989 -10.46597 -10.23076 -10.03554 -9.77278 -9.30182 -9.19861 -8.68056 -8.48085 -8.21184 -7.84980 -7.30778 -6.03321 -4.04990 0.96363 1.15449 1.79601 1.87793 3.05881 3.30909 3.37516 3.40353 3.86432 4.12964 4.22560 4.40711 4.66437 4.74727 4.81259 4.99487 5.18300 5.30247 5.33084 5.34556 5.42656 5.54302 5.56418 5.75755 5.77599 5.84837 5.90928 5.96305 6.12041 6.13945 6.22802 6.25736 6.27984 6.33905 6.45503 6.54261 6.69255 6.78048 6.81030 6.84059 7.01530 7.08763 7.11286 7.26652 7.33709 7.36123 7.46212 7.79560 8.08749 8.18237 8.30184 8.51978 9.03242 9.59389 11.07301 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.003863 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.505438 B = 7247.047149 C = 8164.241397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.061 3.939 4 N -0.534 5.534 5 C 0.190 3.810 6 C -0.508 4.508 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.895 3.105 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.091 3.909 15 C -0.054 4.054 16 C -0.078 4.078 17 C -0.121 4.121 18 C -0.129 4.129 19 C -0.115 4.115 20 C -0.047 4.047 21 C -0.195 4.195 22 C 0.205 3.795 23 N -0.568 5.568 24 C 0.556 3.444 25 N -0.825 5.825 26 N -0.569 5.569 27 C 0.204 3.796 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.017 0.983 35 H 0.037 0.963 36 H -0.013 1.013 37 H 0.261 0.739 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.153 0.847 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.168 0.832 45 H 0.413 0.587 46 H 0.413 0.587 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.117 -11.355 -12.496 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.067 4.067 4 N -0.258 5.258 5 C 0.065 3.935 6 C -0.547 4.547 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.037 4.037 15 C -0.055 4.055 16 C -0.096 4.096 17 C -0.139 4.139 18 C -0.147 4.147 19 C -0.134 4.134 20 C -0.049 4.049 21 C -0.203 4.203 22 C 0.037 3.963 23 N -0.290 5.290 24 C 0.198 3.802 25 N -0.373 5.373 26 N -0.291 5.291 27 C 0.037 3.963 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.005 0.995 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.170 0.830 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.185 0.815 45 H 0.243 0.757 46 H 0.243 0.757 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.988 -11.387 -13.090 17.464 hybrid contribution -0.206 0.996 0.826 1.310 sum 1.782 -10.392 -12.264 16.173 Atomic orbital electron populations 1.21730 0.96563 1.00882 1.01509 1.21539 0.94501 0.97850 1.01710 1.22038 0.88793 0.95420 1.00448 1.62083 1.04633 1.34439 1.24641 1.19820 0.96343 0.82331 0.95014 1.21139 1.32368 1.02751 0.98427 0.91789 1.24971 0.95297 0.96043 0.98101 1.69967 1.37413 1.08743 1.37383 0.86552 0.79191 0.77161 0.84832 1.20634 1.21414 1.19872 1.20979 0.91546 0.98578 0.92615 1.19956 0.95303 0.97652 0.92612 1.21429 0.95491 0.95029 0.97659 1.21293 0.94276 0.99532 0.98804 1.20959 0.99405 1.01655 0.92646 1.20930 0.94524 1.01254 0.96667 1.18133 0.94079 1.02895 0.89781 1.20173 1.00064 1.04110 0.95911 1.23079 0.90866 0.92409 0.89925 1.67855 1.33740 1.22038 1.05353 1.19371 0.86343 0.87128 0.87404 1.41674 1.33356 1.54337 1.07981 1.67852 1.15126 1.26966 1.19192 1.23067 0.96449 0.90624 0.86201 0.93301 0.92620 0.93387 0.93212 0.91316 0.89398 0.96486 0.94510 0.99487 0.92957 0.94676 0.91014 0.82961 0.86384 0.86659 0.86739 0.81509 0.75675 0.75664 0.81438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.79 5.98 -26.73 -0.16 -1.95 16 3 C 0.06 1.14 4.79 -3.82 -0.02 1.12 16 4 N -0.53 -10.80 3.20 -237.52 -0.76 -11.56 16 5 C 0.19 4.75 3.81 -4.98 -0.02 4.73 16 6 C -0.51 -13.65 8.23 -34.44 -0.28 -13.93 16 7 H 0.06 1.69 7.32 -52.48 -0.38 1.31 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 10 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.09 1.61 3.75 -4.98 -0.02 1.59 16 15 C -0.05 -0.92 5.50 -104.29 -0.57 -1.50 16 16 C -0.08 -1.38 8.10 -39.63 -0.32 -1.71 16 17 C -0.12 -1.85 10.04 -39.52 -0.40 -2.24 16 18 C -0.13 -1.72 10.03 -39.63 -0.40 -2.12 16 19 C -0.12 -1.53 9.63 -39.25 -0.38 -1.91 16 20 C -0.05 -0.69 5.46 -104.90 -0.57 -1.27 16 21 C -0.20 -2.70 4.84 -104.62 -0.51 -3.20 16 22 C 0.20 2.76 9.65 -16.87 -0.16 2.60 16 23 N -0.57 -7.84 10.44 -13.68 -0.14 -7.98 16 24 C 0.56 7.34 8.66 -322.79 -2.80 4.55 16 25 N -0.82 -7.60 9.06 29.76 0.27 -7.33 16 26 N -0.57 -7.86 10.44 -13.68 -0.14 -8.01 16 27 C 0.20 2.73 10.92 -16.87 -0.18 2.55 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.70 6.91 -51.93 -0.36 0.35 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.83 6.58 -51.93 -0.34 1.49 16 34 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 35 H 0.04 0.99 6.47 -51.93 -0.34 0.65 16 36 H -0.01 -0.35 8.12 -51.93 -0.42 -0.78 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.04 0.69 7.83 -51.93 -0.41 0.28 16 39 H 0.07 1.12 4.87 -51.93 -0.25 0.87 16 40 H 0.15 3.07 6.37 -52.49 -0.33 2.73 16 41 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 43 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 44 H 0.17 2.00 6.92 -52.49 -0.36 1.64 16 45 H 0.41 3.02 8.94 -40.82 -0.37 2.65 16 46 H 0.41 3.02 8.94 -40.82 -0.37 2.66 16 47 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -30.75 382.42 -12.68 -43.43 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.86 Total: 7.73 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -6.52 Total: -12.77 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.04 Total: -60.34 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.75 -12.68 -43.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140324486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.303 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds