Wall clock time and date at job start Tue Mar 31 2020 15:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47098 * 2 1 4 4 N 1.46901 * 109.47117 * 174.77932 * 3 2 1 5 5 C 1.46903 * 110.99700 * 199.91562 * 4 3 2 6 6 C 1.50694 * 109.47290 * 66.04865 * 5 4 3 7 7 H 1.08004 * 120.00070 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00311 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99669 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00198 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47239 * 90.00033 * 10 8 6 12 12 H 1.48496 * 109.47185 * 210.00038 * 10 8 6 13 13 H 1.48496 * 109.47348 * 330.00170 * 10 8 6 14 14 C 1.46896 * 110.99861 * 75.96302 * 4 3 2 15 15 C 1.50706 * 109.47202 * 199.68350 * 14 4 3 16 16 C 1.38036 * 120.05958 * 7.04790 * 15 14 4 17 17 C 1.38297 * 120.12192 * 180.27638 * 16 15 14 18 18 C 1.38352 * 120.24410 * 359.48662 * 17 16 15 19 19 C 1.37987 * 120.12217 * 0.51266 * 18 17 16 20 20 C 1.39328 * 120.06142 * 187.06329 * 15 14 4 21 21 C 1.48368 * 120.12324 * 359.96661 * 20 15 14 22 22 C 1.39725 * 120.83384 * 304.43460 * 21 20 15 23 23 N 1.32132 * 119.03804 * 179.71852 * 22 21 20 24 24 C 1.32524 * 120.87213 * 0.57410 * 23 22 21 25 25 N 1.38352 * 119.07643 * 179.72744 * 24 23 22 26 26 N 1.32537 * 121.85126 * 359.69776 * 24 23 22 27 27 C 1.32128 * 120.86617 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.46378 * 184.89636 * 1 2 3 29 29 H 1.08990 * 109.47173 * 304.89427 * 1 2 3 30 30 H 1.09003 * 109.47186 * 64.89914 * 1 2 3 31 31 H 1.09002 * 109.47298 * 240.00523 * 2 1 3 32 32 H 1.09000 * 109.47633 * 120.00527 * 2 1 3 33 33 H 1.09002 * 109.46858 * 54.78465 * 3 2 1 34 34 H 1.08997 * 109.46855 * 294.78169 * 3 2 1 35 35 H 1.09002 * 109.46548 * 186.04684 * 5 4 3 36 36 H 1.08999 * 109.47084 * 306.04371 * 5 4 3 37 37 H 0.96998 * 119.99618 * 179.97438 * 9 8 6 38 38 H 1.08999 * 109.47621 * 79.68248 * 14 4 3 39 39 H 1.08996 * 109.47420 * 319.68607 * 14 4 3 40 40 H 1.08002 * 119.94037 * 359.97438 * 16 15 14 41 41 H 1.07994 * 119.87866 * 179.74629 * 17 16 15 42 42 H 1.07997 * 119.93603 * 180.28257 * 18 17 16 43 43 H 1.08003 * 120.06566 * 179.76984 * 19 18 17 44 44 H 1.07993 * 120.48037 * 359.97438 * 22 21 20 45 45 H 0.96998 * 120.00238 * 179.97438 * 25 24 23 46 46 H 0.96997 * 119.99834 * 359.96965 * 25 24 23 47 47 H 1.07989 * 120.47357 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5036 1.4445 0.1260 5 6 3.9896 2.7482 0.5973 6 6 3.5083 2.9846 2.0056 7 1 2.9022 2.2406 2.5012 8 6 3.8424 4.1502 2.6618 9 7 4.5816 5.0556 2.0589 10 14 3.2463 4.4430 4.4077 11 1 4.2452 3.9088 5.3680 12 1 3.0725 5.9003 4.6337 13 1 1.9472 3.7524 4.6096 14 6 4.1418 1.0723 -1.1437 15 6 5.5541 0.6165 -0.8814 16 6 6.0011 0.4614 0.4153 17 6 7.2986 0.0486 0.6575 18 6 8.1523 -0.2213 -0.3972 19 6 7.7161 -0.0697 -1.6975 20 6 6.4111 0.3510 -1.9474 21 6 5.9362 0.5155 -3.3434 22 6 4.7965 -0.1543 -3.7957 23 7 4.4019 0.0223 -5.0443 24 6 5.0780 0.8125 -5.8658 25 7 4.6349 0.9663 -7.1674 26 7 6.1665 1.4601 -5.4753 27 6 6.6210 1.3391 -4.2406 28 1 -0.3632 -1.0240 0.0877 29 1 -0.3633 0.5878 0.8428 30 1 -0.3634 0.4360 -0.9306 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6024 1.9826 0.8396 34 1 1.7550 1.9286 -0.9330 35 1 5.0795 2.7576 0.5794 36 1 3.6087 3.5350 -0.0538 37 1 4.8163 5.8758 2.5204 38 1 4.1562 1.9350 -1.8097 39 1 3.5794 0.2632 -1.6096 40 1 5.3378 0.6675 1.2424 41 1 7.6454 -0.0674 1.6736 42 1 9.1632 -0.5477 -0.2024 43 1 8.3845 -0.2771 -2.5201 44 1 4.2436 -0.8037 -3.1332 45 1 5.1193 1.5416 -7.7799 46 1 3.8398 0.4986 -7.4674 47 1 7.5082 1.8700 -3.9291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140324486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:32 Heat of formation + Delta-G solvation = 59.477979 kcal Electronic energy + Delta-G solvation = -27643.775641 eV Core-core repulsion = 24018.531831 eV Total energy + Delta-G solvation = -3625.243810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.02695 -40.31267 -38.40104 -36.07683 -34.94579 -34.73636 -34.15551 -33.20119 -31.88915 -29.69339 -29.11196 -27.26595 -26.07031 -25.40922 -24.70868 -23.17850 -22.66360 -21.86794 -21.07156 -19.09436 -18.98188 -18.54192 -17.83130 -16.85362 -16.60170 -16.41227 -16.38301 -15.95072 -15.74431 -15.62029 -15.35266 -15.03963 -14.77323 -14.58797 -14.37130 -14.10633 -13.86460 -13.81617 -13.43882 -12.94905 -12.84531 -12.70831 -12.63740 -12.52815 -12.42983 -12.11153 -11.98333 -11.86262 -11.77555 -11.64670 -11.51532 -11.36882 -11.18200 -10.58698 -10.34707 -9.73628 -9.46792 -9.03386 -8.90381 -8.17864 -6.27103 -0.09569 0.12994 0.63146 0.71324 1.41649 1.42383 1.53230 2.19746 2.41092 2.81422 2.98815 3.14401 3.20296 3.24946 3.64745 3.74653 3.97410 4.05976 4.10690 4.16878 4.29981 4.33136 4.37432 4.42926 4.52165 4.59979 4.71131 4.73725 4.81770 4.95382 4.96578 5.00573 5.12714 5.19772 5.21990 5.27023 5.30580 5.34963 5.44325 5.52145 5.64615 5.66930 5.78984 5.84796 5.90356 6.10418 6.23253 6.34014 6.34271 6.36475 6.65298 6.89556 7.37688 7.42291 8.93276 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.003863 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.505438 B = 7247.047149 C = 8164.241397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C 0.061 3.939 4 N -0.531 5.531 5 C 0.212 3.788 6 C -0.516 4.516 7 H 0.064 0.936 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.264 1.264 14 C 0.101 3.899 15 C -0.076 4.076 16 C -0.102 4.102 17 C -0.130 4.130 18 C -0.119 4.119 19 C -0.109 4.109 20 C -0.041 4.041 21 C -0.207 4.207 22 C 0.202 3.798 23 N -0.579 5.579 24 C 0.544 3.456 25 N -0.807 5.807 26 N -0.581 5.581 27 C 0.202 3.798 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.014 0.986 35 H 0.013 0.987 36 H -0.053 1.053 37 H 0.262 0.738 38 H 0.012 0.988 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.178 0.822 45 H 0.422 0.578 46 H 0.422 0.578 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 -13.041 -13.147 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.067 4.067 4 N -0.254 5.254 5 C 0.086 3.914 6 C -0.554 4.554 7 H 0.082 0.918 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.188 1.188 14 C -0.027 4.027 15 C -0.077 4.077 16 C -0.121 4.121 17 C -0.148 4.148 18 C -0.137 4.137 19 C -0.127 4.127 20 C -0.043 4.043 21 C -0.215 4.215 22 C 0.035 3.965 23 N -0.302 5.302 24 C 0.185 3.815 25 N -0.357 5.357 26 N -0.304 5.304 27 C 0.035 3.965 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.031 0.969 36 H -0.036 1.036 37 H 0.071 0.929 38 H 0.030 0.970 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.168 0.832 43 H 0.163 0.837 44 H 0.195 0.805 45 H 0.255 0.745 46 H 0.255 0.745 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.332 -13.096 -13.784 19.156 hybrid contribution -0.294 1.501 0.903 1.776 sum 2.038 -11.595 -12.881 17.451 Atomic orbital electron populations 1.21699 0.94558 1.02346 1.01610 1.21447 0.96133 0.94844 1.02103 1.22087 0.87698 0.97874 0.99069 1.62057 1.05699 1.31214 1.26465 1.19380 0.94661 0.83448 0.93882 1.21417 1.32013 1.02810 0.99200 0.91756 1.25846 0.95345 0.95745 1.02411 1.70104 1.38803 1.09300 1.39255 0.85467 0.79074 0.77039 0.79576 1.19794 1.21155 1.18828 1.20932 0.92750 0.98206 0.90766 1.19907 0.95203 0.99365 0.93200 1.21216 0.96484 0.97358 0.97005 1.21463 0.93558 0.99549 1.00270 1.21320 1.00425 0.99960 0.91959 1.21299 0.94119 0.99639 0.97658 1.18197 0.94402 1.02183 0.89539 1.20120 1.00739 1.05119 0.95517 1.23284 0.90754 0.92353 0.90146 1.67914 1.34034 1.22668 1.05575 1.19761 0.86308 0.86898 0.88486 1.41699 1.33422 1.53830 1.06733 1.67925 1.15623 1.27472 1.19398 1.23365 0.96845 0.90249 0.86088 0.90954 0.93319 0.92711 0.91721 0.91932 0.92010 0.96816 0.96852 1.03583 0.92888 0.96971 0.88821 0.86369 0.85303 0.83247 0.83742 0.80473 0.74500 0.74492 0.79829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.84 16 2 C -0.11 -3.19 5.98 30.60 0.18 -3.01 16 3 C 0.06 2.35 4.79 86.30 0.41 2.76 16 4 N -0.53 -22.58 3.20 -905.37 -2.90 -25.48 16 5 C 0.21 11.32 3.81 85.55 0.33 11.65 16 6 C -0.52 -28.88 8.23 25.60 0.21 -28.67 16 7 H 0.06 3.52 7.32 -2.91 -0.02 3.50 16 8 C 0.00 0.26 5.46 84.65 0.46 0.72 16 9 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 10 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 13 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 14 C 0.10 3.72 3.75 85.56 0.32 4.04 16 15 C -0.08 -2.63 5.50 -19.65 -0.11 -2.74 16 16 C -0.10 -3.76 8.10 22.24 0.18 -3.58 16 17 C -0.13 -3.93 10.04 22.31 0.22 -3.70 16 18 C -0.12 -2.90 10.03 22.24 0.22 -2.67 16 19 C -0.11 -2.64 9.63 22.48 0.22 -2.42 16 20 C -0.04 -1.19 5.46 -20.04 -0.11 -1.30 16 21 C -0.21 -5.54 4.84 -19.86 -0.10 -5.63 16 22 C 0.20 5.26 9.65 85.01 0.82 6.08 16 23 N -0.58 -15.31 10.44 -197.18 -2.06 -17.37 16 24 C 0.54 13.66 8.66 261.48 2.27 15.93 16 25 N -0.81 -13.51 9.06 -59.74 -0.54 -14.05 16 26 N -0.58 -15.35 10.44 -197.19 -2.06 -17.40 16 27 C 0.20 5.17 10.92 85.01 0.93 6.10 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.73 6.91 -2.39 -0.02 1.72 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 2.69 6.58 -2.39 -0.02 2.67 16 34 H 0.01 0.53 8.00 -2.39 -0.02 0.51 16 35 H 0.01 0.77 6.47 -2.39 -0.02 0.76 16 36 H -0.05 -3.22 8.12 -2.39 -0.02 -3.24 16 37 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.01 0.50 7.83 -2.39 -0.02 0.49 16 39 H 0.09 2.94 4.87 -2.39 -0.01 2.93 16 40 H 0.12 5.10 6.37 -2.91 -0.02 5.08 16 41 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 43 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 44 H 0.18 4.05 6.92 -2.91 -0.02 4.03 16 45 H 0.42 5.42 8.94 -92.71 -0.83 4.59 16 46 H 0.42 5.42 8.94 -92.71 -0.83 4.59 16 47 H 0.18 3.91 8.06 -2.92 -0.02 3.88 16 Total: -1.00 -69.15 382.42 1.27 -67.88 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.66 Total: 25.74 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 7.17 Total: -9.30 kcal Atomic # 7 Polarization: -123.31 SS G_CDS: -7.27 Total: -130.58 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.15 1.27 -67.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140324486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.353 kcal (2) G-P(sol) polarization free energy of solvation -69.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds