Wall clock time and date at job start Tue Mar 31 2020 15:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46885 * 2 1 4 4 C 1.53004 * 109.46781 * 183.20080 * 3 2 1 5 5 N 1.46496 * 109.46906 * 183.43531 * 4 3 2 6 6 C 1.36942 * 119.99970 * 269.90693 * 5 4 3 7 7 H 1.08001 * 119.99769 * 11.92295 * 6 5 4 8 8 C 1.38810 * 119.99920 * 191.91879 * 6 5 4 9 9 N 1.31615 * 120.00088 * 26.91997 * 8 6 5 10 10 Si 1.86803 * 119.99839 * 206.92021 * 8 6 5 11 11 H 1.48501 * 109.47223 * 59.99966 * 10 8 6 12 12 H 1.48502 * 109.46925 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47085 * 300.00096 * 10 8 6 14 14 C 1.46498 * 120.00149 * 89.91218 * 5 4 3 15 15 C 1.50700 * 109.47533 * 87.76015 * 14 5 4 16 16 C 1.38042 * 120.05858 * 5.80743 * 15 14 5 17 17 C 1.38295 * 120.12116 * 180.27704 * 16 15 14 18 18 C 1.38344 * 120.24831 * 359.48611 * 17 16 15 19 19 C 1.38003 * 120.11910 * 0.51208 * 18 17 16 20 20 C 1.39319 * 120.06563 * 185.82825 * 15 14 5 21 21 C 1.48376 * 120.11971 * 359.95308 * 20 15 14 22 22 C 1.39712 * 120.84178 * 304.99813 * 21 20 15 23 23 N 1.32128 * 119.04679 * 179.71479 * 22 21 20 24 24 C 1.32534 * 120.86468 * 0.57072 * 23 22 21 25 25 N 1.38355 * 119.07318 * 179.72540 * 24 23 22 26 26 N 1.32524 * 121.85396 * 359.70459 * 24 23 22 27 27 C 1.32134 * 120.86623 * 359.97438 * 26 24 23 28 28 H 1.09003 * 109.46742 * 60.00427 * 1 2 3 29 29 H 1.09001 * 109.47177 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46947 * 300.00239 * 1 2 3 31 31 H 1.08996 * 109.46947 * 239.99761 * 2 1 3 32 32 H 1.08997 * 109.46718 * 120.00015 * 2 1 3 33 33 H 1.08993 * 109.47385 * 63.20240 * 3 2 1 34 34 H 1.09001 * 109.46772 * 303.19738 * 3 2 1 35 35 H 1.09001 * 109.46810 * 63.43410 * 4 3 2 36 36 H 1.09000 * 109.46964 * 303.43392 * 4 3 2 37 37 H 0.97002 * 120.00120 * 179.97438 * 9 8 6 38 38 H 1.09003 * 109.46838 * 327.76192 * 14 5 4 39 39 H 1.09005 * 109.47187 * 207.76237 * 14 5 4 40 40 H 1.08001 * 119.93745 * 359.97438 * 16 15 14 41 41 H 1.08003 * 119.87663 * 179.74520 * 17 16 15 42 42 H 1.07999 * 119.94611 * 180.27997 * 18 17 16 43 43 H 1.07997 * 120.06257 * 179.76559 * 19 18 17 44 44 H 1.08000 * 120.47877 * 359.97438 * 22 21 20 45 45 H 0.96996 * 119.99710 * 179.97438 * 25 24 23 46 46 H 0.97003 * 120.00098 * 359.97208 * 25 24 23 47 47 H 1.07994 * 120.47660 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5679 1.4433 -0.0805 5 7 4.0606 2.8204 0.0020 6 6 4.2304 3.5565 -1.1402 7 1 3.8257 3.2015 -2.0765 8 6 4.9224 4.7589 -1.0945 9 7 5.8386 4.9562 -0.1704 10 14 4.5534 6.0971 -2.3446 11 1 3.1281 6.4990 -2.2333 12 1 5.4217 7.2728 -2.0820 13 1 4.8173 5.5829 -3.7125 14 6 4.3717 3.4101 1.3065 15 6 5.7987 3.0937 1.6734 16 6 6.6202 2.4543 0.7669 17 6 7.9283 2.1582 1.1043 18 6 8.4242 2.5100 2.3470 19 6 7.6118 3.1496 3.2611 20 6 6.2912 3.4456 2.9283 21 6 5.4131 4.1336 3.9066 22 6 4.7571 5.3202 3.5697 23 7 3.9790 5.9000 4.4665 24 6 3.8264 5.3764 5.6744 25 7 3.0072 6.0175 6.5865 26 7 4.4362 4.2557 6.0330 27 6 5.2256 3.6138 5.1900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7243 1.9395 0.9172 34 1 1.6306 1.9726 -0.8600 35 1 3.8821 1.0010 -1.0260 36 1 3.9756 0.8613 0.7461 37 1 6.3225 5.7963 -0.1387 38 1 3.7024 2.9967 2.0610 39 1 4.2403 4.4911 1.2572 40 1 6.2393 2.1804 -0.2059 41 1 8.5664 1.6542 0.3935 42 1 9.4478 2.2805 2.6037 43 1 7.9987 3.4204 4.2323 44 1 4.8808 5.7550 2.5889 45 1 2.8857 5.6459 7.4742 46 1 2.5544 6.8387 6.3383 47 1 5.7191 2.7008 5.4887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140324752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:53 Heat of formation + Delta-G solvation = 95.542296 kcal Electronic energy + Delta-G solvation = -28161.473398 eV Core-core repulsion = 24537.793454 eV Total energy + Delta-G solvation = -3623.679944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.60989 -38.44136 -36.28991 -34.78643 -34.22407 -33.31754 -31.77961 -31.25889 -30.28164 -28.12975 -27.70898 -25.66207 -24.29618 -23.82446 -23.23585 -21.53690 -20.65812 -20.47141 -19.71103 -17.77797 -17.72913 -16.81175 -16.03626 -15.31758 -15.09089 -14.90289 -14.76253 -14.55953 -14.07485 -13.93619 -13.67428 -13.56333 -13.18470 -13.01590 -12.82663 -12.49549 -12.20096 -12.08286 -11.82467 -11.30195 -11.22618 -11.02697 -10.77802 -10.72627 -10.71430 -10.58618 -10.51124 -10.39544 -10.26052 -10.08002 -9.99895 -9.84440 -9.68759 -8.91667 -8.52551 -8.25977 -7.63047 -7.29103 -6.96534 -5.79449 -3.15111 1.38315 1.51496 2.41788 2.52510 3.35923 3.37869 3.46318 3.48763 4.23602 4.47250 4.53610 4.82694 5.08961 5.14841 5.20661 5.33014 5.33921 5.43299 5.53114 5.55706 5.65703 5.79502 5.88360 5.89785 6.09001 6.10711 6.22580 6.27513 6.27740 6.30835 6.37924 6.50299 6.53241 6.62313 6.65441 6.79900 6.88688 6.95875 6.98191 7.09827 7.16624 7.26464 7.34269 7.39205 7.55189 7.61183 7.75619 7.91206 8.07603 8.27059 8.63394 9.13213 9.79213 10.25132 11.20052 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007739 B = 0.005090 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.275839 B = 5500.116000 C = 6256.188956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.137 4.137 4 C 0.150 3.850 5 N -0.596 5.596 6 C -0.260 4.260 7 H 0.073 0.927 8 C 0.007 3.993 9 N -0.884 5.884 10 Si 0.888 3.112 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.286 1.286 14 C 0.207 3.793 15 C 0.004 3.996 16 C -0.046 4.046 17 C -0.134 4.134 18 C -0.148 4.148 19 C -0.119 4.119 20 C -0.069 4.069 21 C -0.178 4.178 22 C 0.209 3.791 23 N -0.569 5.569 24 C 0.547 3.453 25 N -0.829 5.829 26 N -0.575 5.575 27 C 0.189 3.811 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.035 0.965 37 H 0.254 0.746 38 H 0.022 0.978 39 H 0.088 0.912 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.177 0.823 45 H 0.409 0.591 46 H 0.411 0.589 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.393 -4.535 8.760 10.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.177 4.177 4 C 0.023 3.977 5 N -0.316 5.316 6 C -0.389 4.389 7 H 0.090 0.910 8 C -0.191 4.191 9 N -0.528 5.528 10 Si 0.718 3.282 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.212 1.212 14 C 0.080 3.920 15 C 0.001 3.999 16 C -0.064 4.064 17 C -0.152 4.152 18 C -0.167 4.167 19 C -0.137 4.137 20 C -0.072 4.072 21 C -0.186 4.186 22 C 0.042 3.958 23 N -0.291 5.291 24 C 0.189 3.811 25 N -0.379 5.379 26 N -0.297 5.297 27 C 0.023 3.977 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.040 0.960 39 H 0.105 0.895 40 H 0.148 0.852 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.194 0.806 45 H 0.240 0.760 46 H 0.241 0.759 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.883 -3.910 9.422 10.601 hybrid contribution 0.345 0.745 -1.113 1.383 sum -2.538 -3.165 8.309 9.246 Atomic orbital electron populations 1.21766 0.96731 1.00628 1.01559 1.21499 0.95087 0.98246 1.01241 1.22205 0.99390 0.94542 1.01592 1.20793 0.91429 0.86418 0.99059 1.44044 1.75331 1.09540 1.02678 1.19103 1.30114 1.01249 0.88392 0.90960 1.24670 0.96717 0.99455 0.98285 1.70178 1.21541 1.24555 1.36528 0.86585 0.77921 0.82467 0.81245 1.21391 1.21808 1.21244 1.19704 0.88596 0.98934 0.84720 1.20646 0.98407 0.91123 0.89721 1.20870 0.91797 0.94907 0.98804 1.21081 0.96458 1.01635 0.96063 1.20653 0.98540 1.02531 0.94933 1.20737 0.93213 1.01084 0.98703 1.18073 0.92879 1.02521 0.93692 1.20251 1.03476 0.98651 0.96191 1.23394 0.85719 0.89485 0.97243 1.67911 1.22863 1.36149 1.02156 1.19365 0.88415 0.86707 0.86603 1.41607 1.51699 1.29683 1.14867 1.67775 1.14275 1.09916 1.37769 1.22994 0.90074 0.96543 0.88125 0.92980 0.93530 0.93144 0.92480 0.92693 0.93068 0.92258 0.93515 0.94642 0.93509 0.95975 0.89455 0.85239 0.88051 0.87979 0.87973 0.80585 0.76030 0.75864 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.69 5.93 -26.73 -0.16 -1.85 16 3 C -0.14 -2.33 5.54 -26.73 -0.15 -2.48 16 4 C 0.15 2.84 5.39 -4.04 -0.02 2.82 16 5 N -0.60 -13.22 1.35 -174.61 -0.24 -13.46 16 6 C -0.26 -6.40 8.86 -15.06 -0.13 -6.53 16 7 H 0.07 1.80 7.96 -52.49 -0.42 1.38 16 8 C 0.01 0.19 4.78 -17.43 -0.08 0.10 16 9 N -0.88 -22.28 8.48 55.49 0.47 -21.81 16 10 Si 0.89 20.60 29.63 -169.99 -5.04 15.57 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.21 4.48 3.88 -5.19 -0.02 4.46 16 15 C 0.00 0.08 4.38 -104.29 -0.46 -0.37 16 16 C -0.05 -0.97 7.82 -39.63 -0.31 -1.28 16 17 C -0.13 -2.53 10.04 -39.52 -0.40 -2.93 16 18 C -0.15 -2.57 10.03 -39.63 -0.40 -2.97 16 19 C -0.12 -2.07 9.62 -39.25 -0.38 -2.44 16 20 C -0.07 -1.30 5.46 -104.90 -0.57 -1.88 16 21 C -0.18 -3.13 4.88 -104.62 -0.51 -3.64 16 22 C 0.21 3.85 9.63 -16.87 -0.16 3.69 16 23 N -0.57 -10.05 10.44 -13.68 -0.14 -10.19 16 24 C 0.55 8.72 8.66 -322.79 -2.80 5.93 16 25 N -0.83 -9.53 9.06 29.76 0.27 -9.26 16 26 N -0.57 -9.20 10.44 -13.68 -0.14 -9.35 16 27 C 0.19 2.98 10.92 -16.87 -0.18 2.80 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 37 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 38 H 0.02 0.47 7.96 -51.93 -0.41 0.06 16 39 H 0.09 2.08 4.63 -51.93 -0.24 1.84 16 40 H 0.13 3.03 6.22 -52.49 -0.33 2.70 16 41 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 42 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.18 3.50 6.85 -52.49 -0.36 3.14 16 45 H 0.41 3.76 8.94 -40.82 -0.36 3.39 16 46 H 0.41 4.01 8.94 -40.82 -0.37 3.65 16 47 H 0.16 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -26.91 381.61 -12.54 -39.45 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -7.11 Total: 11.34 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -6.36 Total: -8.04 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: 0.22 Total: -64.06 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.04 Total: 15.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -26.91 -12.54 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140324752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.990 kcal (2) G-P(sol) polarization free energy of solvation -26.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds