Wall clock time and date at job start Tue Mar 31 2020 15:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46885 * 2 1 4 4 C 1.53004 * 109.46781 * 183.20080 * 3 2 1 5 5 N 1.46496 * 109.46906 * 183.43531 * 4 3 2 6 6 C 1.36942 * 119.99970 * 269.90693 * 5 4 3 7 7 H 1.08001 * 119.99769 * 11.92295 * 6 5 4 8 8 C 1.38810 * 119.99920 * 191.91879 * 6 5 4 9 9 N 1.31615 * 120.00088 * 26.91997 * 8 6 5 10 10 Si 1.86803 * 119.99839 * 206.92021 * 8 6 5 11 11 H 1.48501 * 109.47223 * 59.99966 * 10 8 6 12 12 H 1.48502 * 109.46925 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47085 * 300.00096 * 10 8 6 14 14 C 1.46498 * 120.00149 * 89.91218 * 5 4 3 15 15 C 1.50700 * 109.47533 * 87.76015 * 14 5 4 16 16 C 1.38042 * 120.05858 * 5.80743 * 15 14 5 17 17 C 1.38295 * 120.12116 * 180.27704 * 16 15 14 18 18 C 1.38344 * 120.24831 * 359.48611 * 17 16 15 19 19 C 1.38003 * 120.11910 * 0.51208 * 18 17 16 20 20 C 1.39319 * 120.06563 * 185.82825 * 15 14 5 21 21 C 1.48376 * 120.11971 * 359.95308 * 20 15 14 22 22 C 1.39712 * 120.84178 * 304.99813 * 21 20 15 23 23 N 1.32128 * 119.04679 * 179.71479 * 22 21 20 24 24 C 1.32534 * 120.86468 * 0.57072 * 23 22 21 25 25 N 1.38355 * 119.07318 * 179.72540 * 24 23 22 26 26 N 1.32524 * 121.85396 * 359.70459 * 24 23 22 27 27 C 1.32134 * 120.86623 * 359.97438 * 26 24 23 28 28 H 1.09003 * 109.46742 * 60.00427 * 1 2 3 29 29 H 1.09001 * 109.47177 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46947 * 300.00239 * 1 2 3 31 31 H 1.08996 * 109.46947 * 239.99761 * 2 1 3 32 32 H 1.08997 * 109.46718 * 120.00015 * 2 1 3 33 33 H 1.08993 * 109.47385 * 63.20240 * 3 2 1 34 34 H 1.09001 * 109.46772 * 303.19738 * 3 2 1 35 35 H 1.09001 * 109.46810 * 63.43410 * 4 3 2 36 36 H 1.09000 * 109.46964 * 303.43392 * 4 3 2 37 37 H 0.97002 * 120.00120 * 179.97438 * 9 8 6 38 38 H 1.09003 * 109.46838 * 327.76192 * 14 5 4 39 39 H 1.09005 * 109.47187 * 207.76237 * 14 5 4 40 40 H 1.08001 * 119.93745 * 359.97438 * 16 15 14 41 41 H 1.08003 * 119.87663 * 179.74520 * 17 16 15 42 42 H 1.07999 * 119.94611 * 180.27997 * 18 17 16 43 43 H 1.07997 * 120.06257 * 179.76559 * 19 18 17 44 44 H 1.08000 * 120.47877 * 359.97438 * 22 21 20 45 45 H 0.96996 * 119.99710 * 179.97438 * 25 24 23 46 46 H 0.97003 * 120.00098 * 359.97208 * 25 24 23 47 47 H 1.07994 * 120.47660 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5679 1.4433 -0.0805 5 7 4.0606 2.8204 0.0020 6 6 4.2304 3.5565 -1.1402 7 1 3.8257 3.2015 -2.0765 8 6 4.9224 4.7589 -1.0945 9 7 5.8386 4.9562 -0.1704 10 14 4.5534 6.0971 -2.3446 11 1 3.1281 6.4990 -2.2333 12 1 5.4217 7.2728 -2.0820 13 1 4.8173 5.5829 -3.7125 14 6 4.3717 3.4101 1.3065 15 6 5.7987 3.0937 1.6734 16 6 6.6202 2.4543 0.7669 17 6 7.9283 2.1582 1.1043 18 6 8.4242 2.5100 2.3470 19 6 7.6118 3.1496 3.2611 20 6 6.2912 3.4456 2.9283 21 6 5.4131 4.1336 3.9066 22 6 4.7571 5.3202 3.5697 23 7 3.9790 5.9000 4.4665 24 6 3.8264 5.3764 5.6744 25 7 3.0072 6.0175 6.5865 26 7 4.4362 4.2557 6.0330 27 6 5.2256 3.6138 5.1900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7243 1.9395 0.9172 34 1 1.6306 1.9726 -0.8600 35 1 3.8821 1.0010 -1.0260 36 1 3.9756 0.8613 0.7461 37 1 6.3225 5.7963 -0.1387 38 1 3.7024 2.9967 2.0610 39 1 4.2403 4.4911 1.2572 40 1 6.2393 2.1804 -0.2059 41 1 8.5664 1.6542 0.3935 42 1 9.4478 2.2805 2.6037 43 1 7.9987 3.4204 4.2323 44 1 4.8808 5.7550 2.5889 45 1 2.8857 5.6459 7.4742 46 1 2.5544 6.8387 6.3383 47 1 5.7191 2.7008 5.4887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140324752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:52 Heat of formation + Delta-G solvation = 85.296274 kcal Electronic energy + Delta-G solvation = -28161.917698 eV Core-core repulsion = 24537.793454 eV Total energy + Delta-G solvation = -3624.124245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.90027 -39.92469 -37.85312 -35.96139 -35.62499 -34.61368 -33.21633 -32.92981 -31.74535 -29.51251 -29.14537 -27.34115 -25.72403 -25.26120 -24.55511 -22.98315 -22.07714 -21.84739 -21.28278 -19.05407 -18.90958 -18.51950 -17.48384 -16.86363 -16.42824 -16.24940 -16.12517 -15.97313 -15.55710 -15.45352 -15.24757 -14.81996 -14.63714 -14.37510 -14.24375 -13.90200 -13.64019 -13.61090 -13.16411 -13.03264 -12.76333 -12.57303 -12.39698 -12.21641 -12.04577 -12.01866 -11.91679 -11.84591 -11.75013 -11.63778 -11.42633 -11.37468 -11.25556 -10.40052 -10.22952 -9.55319 -9.13119 -8.74893 -8.68759 -7.69701 -5.06066 0.06458 0.20307 0.97955 1.06276 1.47768 1.54134 1.56953 2.26542 2.57752 2.93072 3.25521 3.29823 3.41230 3.64867 3.80117 3.94766 4.15470 4.17697 4.26314 4.31906 4.39997 4.47153 4.49309 4.55736 4.60135 4.84354 4.86573 4.93788 4.99939 5.04264 5.06741 5.08569 5.18085 5.26818 5.31867 5.38656 5.44246 5.49431 5.50933 5.63313 5.67542 5.77616 5.91005 5.96075 6.06298 6.30325 6.37601 6.41982 6.45041 6.58834 7.23380 7.45492 7.96112 8.38914 9.24193 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007739 B = 0.005090 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.275839 B = 5500.116000 C = 6256.188956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.126 4.126 4 C 0.151 3.849 5 N -0.606 5.606 6 C -0.263 4.263 7 H 0.065 0.935 8 C -0.027 4.027 9 N -0.887 5.887 10 Si 0.933 3.067 11 H -0.293 1.293 12 H -0.299 1.299 13 H -0.286 1.286 14 C 0.220 3.780 15 C -0.015 4.015 16 C -0.065 4.065 17 C -0.142 4.142 18 C -0.141 4.141 19 C -0.116 4.116 20 C -0.068 4.068 21 C -0.191 4.191 22 C 0.199 3.801 23 N -0.587 5.587 24 C 0.540 3.460 25 N -0.808 5.808 26 N -0.575 5.575 27 C 0.203 3.797 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.244 0.756 38 H 0.019 0.981 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.152 0.848 45 H 0.423 0.577 46 H 0.420 0.580 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 -5.643 10.827 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.166 4.166 4 C 0.025 3.975 5 N -0.327 5.327 6 C -0.392 4.392 7 H 0.082 0.918 8 C -0.225 4.225 9 N -0.531 5.531 10 Si 0.763 3.237 11 H -0.221 1.221 12 H -0.226 1.226 13 H -0.212 1.212 14 C 0.094 3.906 15 C -0.018 4.018 16 C -0.083 4.083 17 C -0.161 4.161 18 C -0.159 4.159 19 C -0.135 4.135 20 C -0.070 4.070 21 C -0.199 4.199 22 C 0.033 3.967 23 N -0.311 5.311 24 C 0.181 3.819 25 N -0.358 5.358 26 N -0.298 5.298 27 C 0.035 3.965 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.169 0.831 45 H 0.256 0.744 46 H 0.252 0.748 47 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.616 -5.014 11.517 12.830 hybrid contribution 0.223 1.083 -1.673 2.005 sum -2.393 -3.931 9.844 10.867 Atomic orbital electron populations 1.21740 0.95296 1.01985 1.01404 1.21448 0.96306 0.95704 1.02017 1.22042 0.97650 0.96734 1.00164 1.20880 0.92644 0.84937 0.99030 1.44161 1.75641 1.10599 1.02266 1.19168 1.29395 1.01693 0.88942 0.91759 1.25078 0.97173 1.00562 0.99687 1.70327 1.21790 1.23807 1.37168 0.85883 0.76951 0.80769 0.80055 1.22078 1.22580 1.21213 1.19444 0.89647 0.97169 0.84296 1.20495 0.97695 0.92573 0.90997 1.20671 0.93201 0.96660 0.97799 1.21279 0.95645 1.01772 0.97368 1.21013 0.99991 1.01076 0.93847 1.21080 0.92356 1.00077 0.99946 1.18203 0.93827 1.01901 0.93117 1.20156 1.04170 0.98594 0.96950 1.23075 0.86673 0.90284 0.96705 1.67875 1.23425 1.36814 1.02937 1.19738 0.88606 0.86882 0.86627 1.41617 1.50058 1.29481 1.14688 1.67916 1.14463 1.09904 1.37531 1.23417 0.89165 0.96878 0.87026 0.93211 0.91399 0.93291 0.91770 0.91833 0.94268 0.93848 0.93869 0.94081 0.94597 0.96320 0.92153 0.88325 0.86616 0.84620 0.85084 0.83082 0.74417 0.74764 0.78929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.91 71.98 0.71 -2.66 16 2 C -0.12 -3.09 5.93 30.60 0.18 -2.91 16 3 C -0.13 -4.33 5.54 30.60 0.17 -4.16 16 4 C 0.15 5.87 5.39 86.38 0.47 6.34 16 5 N -0.61 -27.98 1.35 -706.33 -0.96 -28.94 16 6 C -0.26 -13.43 8.86 84.03 0.74 -12.68 16 7 H 0.06 3.32 7.96 -2.91 -0.02 3.30 16 8 C -0.03 -1.42 4.78 84.86 0.41 -1.01 16 9 N -0.89 -46.35 8.48 21.65 0.18 -46.17 16 10 Si 0.93 43.72 29.63 68.60 2.03 45.75 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 13 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 14 C 0.22 9.96 3.88 85.63 0.33 10.29 16 15 C -0.01 -0.62 4.38 -19.65 -0.09 -0.71 16 16 C -0.06 -2.80 7.82 22.24 0.17 -2.63 16 17 C -0.14 -5.25 10.04 22.31 0.22 -5.03 16 18 C -0.14 -4.52 10.03 22.24 0.22 -4.30 16 19 C -0.12 -3.75 9.62 22.49 0.22 -3.54 16 20 C -0.07 -2.52 5.46 -20.05 -0.11 -2.63 16 21 C -0.19 -6.58 4.88 -19.86 -0.10 -6.68 16 22 C 0.20 7.51 9.63 85.00 0.82 8.32 16 23 N -0.59 -20.71 10.44 -197.19 -2.06 -22.76 16 24 C 0.54 16.40 8.66 261.48 2.27 18.67 16 25 N -0.81 -16.86 9.06 -59.74 -0.54 -17.41 16 26 N -0.58 -17.13 10.44 -197.18 -2.06 -19.19 16 27 C 0.20 5.93 10.92 85.01 0.93 6.86 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 36 H 0.04 1.54 8.07 -2.39 -0.02 1.52 16 37 H 0.24 12.98 8.31 -92.71 -0.77 12.21 16 38 H 0.02 0.83 7.96 -2.39 -0.02 0.81 16 39 H 0.06 3.05 4.63 -2.38 -0.01 3.03 16 40 H 0.10 4.82 6.22 -2.91 -0.02 4.80 16 41 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 42 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 43 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 44 H 0.15 6.40 6.85 -2.91 -0.02 6.38 16 45 H 0.42 6.64 8.94 -92.71 -0.83 5.81 16 46 H 0.42 7.40 8.94 -92.71 -0.83 6.57 16 47 H 0.19 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -59.27 381.61 3.50 -55.77 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.67 Total: 31.39 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 7.57 Total: 1.54 kcal Atomic # 7 Polarization: -129.02 SS G_CDS: -5.43 Total: -134.46 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -59.27 3.50 -55.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140324752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.062 kcal (2) G-P(sol) polarization free energy of solvation -59.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds