Wall clock time and date at job start Tue Mar 31 2020 14:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35893 * 116.99873 * 2 1 4 4 C 1.39838 * 119.62682 * 359.97173 * 3 2 1 5 5 C 1.35975 * 121.01330 * 180.02562 * 4 3 2 6 6 C 1.40646 * 119.82006 * 0.04377 * 5 4 3 7 7 N 1.33679 * 121.01412 * 180.02562 * 6 5 4 8 8 C 1.31073 * 121.34353 * 179.91763 * 7 6 5 9 9 C 1.39336 * 121.75144 * 0.02562 * 8 7 6 10 10 C 1.36570 * 119.93131 * 359.74125 * 9 8 7 11 11 C 1.50698 * 120.92212 * 180.27928 * 10 9 8 12 12 N 1.46903 * 109.47173 * 106.75945 * 11 10 9 13 13 C 1.46852 * 110.99602 * 293.06200 * 12 11 10 14 14 C 1.53035 * 109.52234 * 174.15780 * 13 12 11 15 15 C 1.53119 * 109.27329 * 59.18716 * 14 13 12 16 16 C 1.53119 * 109.16175 * 302.34159 * 15 14 13 17 17 H 1.09006 * 109.50012 * 297.71626 * 16 15 14 18 18 C 1.50696 * 109.50695 * 177.59779 * 16 15 14 19 19 H 1.07998 * 120.00288 * 275.34653 * 18 16 15 20 20 C 1.37882 * 120.00002 * 95.34342 * 18 16 15 21 21 N 1.31514 * 119.99875 * 174.70714 * 20 18 16 22 22 Si 1.86793 * 119.99999 * 354.70754 * 20 18 16 23 23 H 1.48497 * 109.47274 * 94.33518 * 22 20 18 24 24 H 1.48506 * 109.47336 * 214.33847 * 22 20 18 25 25 H 1.48503 * 109.47221 * 334.33544 * 22 20 18 26 26 C 1.46840 * 111.00150 * 168.86017 * 12 11 10 27 27 C 1.40800 * 118.15152 * 0.45565 * 10 9 8 28 28 C 1.36599 * 119.62812 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46807 * 60.00931 * 1 2 3 30 30 H 1.09003 * 109.46971 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47667 * 300.00532 * 1 2 3 32 32 H 1.08003 * 119.49816 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.09268 * 180.02562 * 5 4 3 34 34 H 1.07997 * 119.12807 * 179.97438 * 8 7 6 35 35 H 1.07996 * 120.03463 * 179.97438 * 9 8 7 36 36 H 1.09000 * 109.47167 * 226.75331 * 11 10 9 37 37 H 1.08998 * 109.47207 * 346.75786 * 11 10 9 38 38 H 1.08993 * 109.46681 * 294.18391 * 13 12 11 39 39 H 1.09008 * 109.45834 * 54.15099 * 13 12 11 40 40 H 1.08992 * 109.50944 * 299.24396 * 14 13 12 41 41 H 1.08997 * 109.53612 * 179.13903 * 14 13 12 42 42 H 1.09008 * 109.52551 * 182.43834 * 15 14 13 43 43 H 1.08997 * 109.58065 * 62.27843 * 15 14 13 44 44 H 0.96999 * 120.00256 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.46095 * 305.85131 * 26 12 11 46 46 H 1.09000 * 109.46437 * 65.81679 * 26 12 11 47 47 H 1.08001 * 120.20993 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2767 2.3786 -0.0006 5 6 1.8645 3.6048 -0.0011 6 6 3.2672 3.7079 -0.0020 7 7 3.8700 4.9011 -0.0021 8 6 5.1767 5.0048 -0.0013 9 6 6.0013 3.8817 -0.0009 10 6 5.4506 2.6319 0.0040 11 6 6.3214 1.4020 0.0108 12 7 6.2765 0.7776 1.3398 13 6 6.9108 1.6377 2.3469 14 6 6.7177 1.0262 3.7364 15 6 7.3430 -0.3713 3.7649 16 6 6.6990 -1.2323 2.6748 17 1 5.6337 -1.3410 2.8788 18 6 7.3499 -2.5913 2.6569 19 1 8.2631 -2.7455 2.1013 20 6 6.7796 -3.6380 3.3500 21 7 7.2880 -4.8469 3.2508 22 14 5.2849 -3.3391 4.4297 23 1 4.0502 -3.6253 3.6560 24 1 5.3443 -4.2313 5.6153 25 1 5.2721 -1.9228 4.8762 26 6 6.8925 -0.5552 1.3161 27 6 4.0467 2.5245 -0.0013 28 6 3.4105 1.2735 0.0005 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8898 32 1 0.1991 2.3056 -0.0006 33 1 1.2560 4.4970 -0.0012 34 1 5.6261 5.9868 -0.0017 35 1 7.0749 3.9993 -0.0007 36 1 5.9578 0.6952 -0.7351 37 1 7.3481 1.6824 -0.2244 38 1 7.9760 1.7234 2.1326 39 1 6.4541 2.6271 2.3190 40 1 5.6529 0.9530 3.9572 41 1 7.2016 1.6565 4.4825 42 1 7.1700 -0.8280 4.7395 43 1 8.4151 -0.2955 3.5834 44 1 6.8866 -5.5833 3.7380 45 1 6.4227 -1.1586 0.5394 46 1 7.9578 -0.4593 1.1065 47 1 3.9962 0.3661 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141150928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:57 Heat of formation + Delta-G solvation = 15.887602 kcal Electronic energy + Delta-G solvation = -28093.407501 eV Core-core repulsion = 24433.980719 eV Total energy + Delta-G solvation = -3659.426782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.09940 -39.35696 -38.37079 -36.00915 -34.90659 -32.89011 -31.76676 -30.57919 -30.20042 -29.92481 -27.30178 -26.53095 -25.00319 -23.87487 -23.20220 -22.44029 -21.48887 -20.48216 -18.85762 -18.65109 -17.78484 -16.91609 -16.82869 -15.91959 -15.85142 -15.45947 -15.15012 -14.51047 -14.37917 -14.21945 -14.02865 -13.86192 -13.55461 -13.50052 -13.20506 -12.88524 -12.59363 -12.50933 -12.25686 -12.22225 -12.02308 -11.90590 -11.41880 -11.16714 -11.09972 -10.96753 -10.79228 -10.66897 -10.23521 -10.14588 -9.80765 -9.56849 -9.54332 -9.27184 -8.94539 -8.70323 -8.48030 -7.94159 -7.78237 -6.06725 -4.05667 0.36797 0.81710 1.97041 2.87452 3.20936 3.32957 3.41391 3.47159 4.02750 4.23427 4.38431 4.45975 4.50054 4.64177 4.70406 4.86572 4.96886 5.00090 5.02115 5.12182 5.24071 5.33564 5.34581 5.45274 5.51559 5.56845 5.65987 5.74883 5.79365 5.86126 5.97681 6.01072 6.03067 6.13710 6.21576 6.24008 6.32662 6.40226 6.48682 6.56725 6.68295 6.68892 6.83455 6.90990 7.29587 7.30592 7.45053 7.54766 7.59503 7.86117 7.88903 8.53804 8.98282 9.57725 11.06458 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011526 B = 0.004425 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.662229 B = 6326.672007 C = 8000.501973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.118 3.882 4 C -0.171 4.171 5 C -0.063 4.063 6 C 0.095 3.905 7 N -0.474 5.474 8 C 0.121 3.879 9 C -0.172 4.172 10 C -0.009 4.009 11 C 0.086 3.914 12 N -0.534 5.534 13 C 0.063 3.937 14 C -0.119 4.119 15 C -0.114 4.114 16 C 0.023 3.977 17 H 0.039 0.961 18 C -0.512 4.512 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.901 5.901 22 Si 0.874 3.126 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.259 1.259 26 C 0.074 3.926 27 C -0.046 4.046 28 C -0.116 4.116 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.028 0.972 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.263 0.737 45 H 0.069 0.931 46 H 0.026 0.974 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.943 17.660 -7.673 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.073 3.927 4 C -0.191 4.191 5 C -0.082 4.082 6 C -0.026 4.026 7 N -0.182 5.182 8 C -0.052 4.052 9 C -0.193 4.193 10 C -0.018 4.018 11 C -0.041 4.041 12 N -0.259 5.259 13 C -0.065 4.065 14 C -0.157 4.157 15 C -0.152 4.152 16 C 0.003 3.997 17 H 0.058 0.942 18 C -0.551 4.551 19 H 0.089 0.911 20 C -0.128 4.128 21 N -0.539 5.539 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.184 1.184 26 C -0.053 4.053 27 C -0.049 4.049 28 C -0.136 4.136 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.173 0.827 35 H 0.152 0.848 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.997 17.887 -7.481 22.290 hybrid contribution 0.393 -0.468 0.487 0.781 sum -10.604 17.420 -6.994 21.559 Atomic orbital electron populations 1.23068 0.78654 1.04120 1.01044 1.86178 1.21128 1.26469 1.88668 1.18705 0.92298 0.84199 0.97515 1.21084 1.00386 0.92138 1.05472 1.20536 0.92267 0.97446 0.97908 1.18800 0.93999 0.88211 1.01603 1.67926 1.11874 1.25881 1.12513 1.22784 0.88929 0.98673 0.94777 1.21783 1.01481 0.92804 1.03202 1.20114 0.92671 0.95366 0.93664 1.21068 0.96488 0.93108 0.93466 1.62085 1.57014 1.03779 1.02999 1.22012 0.95979 0.95699 0.92814 1.21661 1.01321 0.98049 0.94690 1.21910 0.99279 0.93165 1.00850 1.19128 0.96856 0.94086 0.89596 0.94246 1.20944 1.10783 0.91724 1.31607 0.91134 1.25020 0.96837 0.94802 0.96149 1.69917 1.41693 0.99847 1.42437 0.86889 0.83568 0.78756 0.80620 1.20351 1.21733 1.18354 1.22283 0.95734 0.86209 1.01076 1.18311 0.93298 0.93324 0.99943 1.20294 0.91591 0.98106 1.03569 0.92795 0.88143 0.92686 0.84903 0.84622 0.82714 0.84836 0.89288 0.93617 0.95373 0.92128 0.92112 0.92991 0.92946 0.93225 0.92727 0.91247 0.95595 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.80 101.05 0.99 1.22 16 2 O -0.31 -4.22 10.47 -19.40 -0.20 -4.43 16 3 C 0.12 1.62 6.64 -39.58 -0.26 1.36 16 4 C -0.17 -1.93 8.93 -39.80 -0.36 -2.29 16 5 C -0.06 -0.75 9.98 -39.49 -0.39 -1.15 16 6 C 0.09 1.33 6.61 -84.83 -0.56 0.77 16 7 N -0.47 -6.39 10.34 -10.96 -0.11 -6.50 16 8 C 0.12 1.36 11.15 -17.47 -0.19 1.17 16 9 C -0.17 -1.95 9.10 -39.78 -0.36 -2.31 16 10 C -0.01 -0.13 4.46 -104.26 -0.46 -0.59 16 11 C 0.09 1.20 4.29 -4.98 -0.02 1.18 16 12 N -0.53 -8.97 4.40 -236.12 -1.04 -10.01 16 13 C 0.06 1.00 5.31 -3.83 -0.02 0.98 16 14 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 15 C -0.11 -2.38 5.07 -26.61 -0.13 -2.52 16 16 C 0.02 0.52 1.80 -91.69 -0.17 0.36 16 17 H 0.04 0.96 5.61 -51.93 -0.29 0.67 16 18 C -0.51 -14.08 8.86 -34.44 -0.31 -14.38 16 19 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 20 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 21 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 22 Si 0.87 21.72 26.59 -169.99 -4.52 17.20 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H -0.26 -6.19 6.06 56.52 0.34 -5.85 16 26 C 0.07 1.45 4.72 -3.84 -0.02 1.43 16 27 C -0.05 -0.67 5.74 -106.81 -0.61 -1.29 16 28 C -0.12 -1.74 9.20 -39.38 -0.36 -2.10 16 29 H 0.05 0.37 7.64 -51.93 -0.40 -0.03 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.42 7.64 -51.93 -0.40 0.02 16 32 H 0.13 1.10 6.22 -52.48 -0.33 0.77 16 33 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.13 1.20 8.01 -52.49 -0.42 0.78 16 36 H 0.09 1.21 7.27 -51.93 -0.38 0.83 16 37 H 0.05 0.58 7.94 -51.93 -0.41 0.17 16 38 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.90 6.69 -51.92 -0.35 0.56 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 1.15 7.08 -51.92 -0.37 0.78 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.07 1.38 8.00 -51.93 -0.42 0.97 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.15 2.36 6.70 -52.49 -0.35 2.01 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -32.01 369.39 -10.14 -42.15 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.10 Total: 1.05 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -3.50 Total: -18.42 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.38 Total: -43.12 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.20 Total: -4.43 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.52 Total: 17.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.01 -10.14 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141150928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.038 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds