Wall clock time and date at job start Tue Mar 31 2020 14:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35893 * 116.99873 * 2 1 4 4 C 1.39838 * 119.62682 * 359.97173 * 3 2 1 5 5 C 1.35975 * 121.01330 * 180.02562 * 4 3 2 6 6 C 1.40646 * 119.82006 * 0.04377 * 5 4 3 7 7 N 1.33679 * 121.01412 * 180.02562 * 6 5 4 8 8 C 1.31073 * 121.34353 * 179.91763 * 7 6 5 9 9 C 1.39336 * 121.75144 * 0.02562 * 8 7 6 10 10 C 1.36570 * 119.93131 * 359.74125 * 9 8 7 11 11 C 1.50698 * 120.92212 * 180.27928 * 10 9 8 12 12 N 1.46903 * 109.47173 * 106.75945 * 11 10 9 13 13 C 1.46852 * 110.99602 * 293.06200 * 12 11 10 14 14 C 1.53035 * 109.52234 * 174.15780 * 13 12 11 15 15 C 1.53119 * 109.27329 * 59.18716 * 14 13 12 16 16 C 1.53119 * 109.16175 * 302.34159 * 15 14 13 17 17 H 1.09006 * 109.50012 * 297.71626 * 16 15 14 18 18 C 1.50696 * 109.50695 * 177.59779 * 16 15 14 19 19 H 1.07998 * 120.00288 * 275.34653 * 18 16 15 20 20 C 1.37882 * 120.00002 * 95.34342 * 18 16 15 21 21 N 1.31514 * 119.99875 * 174.70714 * 20 18 16 22 22 Si 1.86793 * 119.99999 * 354.70754 * 20 18 16 23 23 H 1.48497 * 109.47274 * 94.33518 * 22 20 18 24 24 H 1.48506 * 109.47336 * 214.33847 * 22 20 18 25 25 H 1.48503 * 109.47221 * 334.33544 * 22 20 18 26 26 C 1.46840 * 111.00150 * 168.86017 * 12 11 10 27 27 C 1.40800 * 118.15152 * 0.45565 * 10 9 8 28 28 C 1.36599 * 119.62812 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46807 * 60.00931 * 1 2 3 30 30 H 1.09003 * 109.46971 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47667 * 300.00532 * 1 2 3 32 32 H 1.08003 * 119.49816 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.09268 * 180.02562 * 5 4 3 34 34 H 1.07997 * 119.12807 * 179.97438 * 8 7 6 35 35 H 1.07996 * 120.03463 * 179.97438 * 9 8 7 36 36 H 1.09000 * 109.47167 * 226.75331 * 11 10 9 37 37 H 1.08998 * 109.47207 * 346.75786 * 11 10 9 38 38 H 1.08993 * 109.46681 * 294.18391 * 13 12 11 39 39 H 1.09008 * 109.45834 * 54.15099 * 13 12 11 40 40 H 1.08992 * 109.50944 * 299.24396 * 14 13 12 41 41 H 1.08997 * 109.53612 * 179.13903 * 14 13 12 42 42 H 1.09008 * 109.52551 * 182.43834 * 15 14 13 43 43 H 1.08997 * 109.58065 * 62.27843 * 15 14 13 44 44 H 0.96999 * 120.00256 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.46095 * 305.85131 * 26 12 11 46 46 H 1.09000 * 109.46437 * 65.81679 * 26 12 11 47 47 H 1.08001 * 120.20993 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2767 2.3786 -0.0006 5 6 1.8645 3.6048 -0.0011 6 6 3.2672 3.7079 -0.0020 7 7 3.8700 4.9011 -0.0021 8 6 5.1767 5.0048 -0.0013 9 6 6.0013 3.8817 -0.0009 10 6 5.4506 2.6319 0.0040 11 6 6.3214 1.4020 0.0108 12 7 6.2765 0.7776 1.3398 13 6 6.9108 1.6377 2.3469 14 6 6.7177 1.0262 3.7364 15 6 7.3430 -0.3713 3.7649 16 6 6.6990 -1.2323 2.6748 17 1 5.6337 -1.3410 2.8788 18 6 7.3499 -2.5913 2.6569 19 1 8.2631 -2.7455 2.1013 20 6 6.7796 -3.6380 3.3500 21 7 7.2880 -4.8469 3.2508 22 14 5.2849 -3.3391 4.4297 23 1 4.0502 -3.6253 3.6560 24 1 5.3443 -4.2313 5.6153 25 1 5.2721 -1.9228 4.8762 26 6 6.8925 -0.5552 1.3161 27 6 4.0467 2.5245 -0.0013 28 6 3.4105 1.2735 0.0005 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8898 32 1 0.1991 2.3056 -0.0006 33 1 1.2560 4.4970 -0.0012 34 1 5.6261 5.9868 -0.0017 35 1 7.0749 3.9993 -0.0007 36 1 5.9578 0.6952 -0.7351 37 1 7.3481 1.6824 -0.2244 38 1 7.9760 1.7234 2.1326 39 1 6.4541 2.6271 2.3190 40 1 5.6529 0.9530 3.9572 41 1 7.2016 1.6565 4.4825 42 1 7.1700 -0.8280 4.7395 43 1 8.4151 -0.2955 3.5834 44 1 6.8866 -5.5833 3.7380 45 1 6.4227 -1.1586 0.5394 46 1 7.9578 -0.4593 1.1065 47 1 3.9962 0.3661 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141150928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:56 Heat of formation + Delta-G solvation = -4.248058 kcal Electronic energy + Delta-G solvation = -28094.280648 eV Core-core repulsion = 24433.980719 eV Total energy + Delta-G solvation = -3660.299930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.04244 -40.33842 -39.74015 -36.92517 -36.23321 -34.67210 -33.22726 -32.01196 -31.40793 -30.85375 -28.13492 -27.65864 -26.91116 -24.88572 -24.10469 -23.81437 -23.02246 -21.62751 -20.44276 -19.60278 -19.00571 -18.69764 -17.81589 -17.04053 -16.76486 -16.66939 -16.21413 -16.00318 -15.71618 -15.34156 -15.21035 -15.05511 -14.91192 -14.64528 -14.55821 -14.32604 -14.10268 -13.61810 -13.55029 -13.28634 -13.02653 -12.98581 -12.96985 -12.74798 -12.53320 -12.31605 -12.00916 -11.82840 -11.75019 -11.62820 -11.37860 -11.21830 -11.08346 -10.87981 -10.60210 -10.42496 -9.60558 -9.20471 -8.82107 -8.29777 -6.31637 -0.56755 -0.10346 0.99995 1.32809 1.35372 1.47859 1.96337 2.35035 2.37692 2.91526 3.09621 3.26006 3.40281 3.53232 3.75426 3.79224 3.95638 4.08884 4.10473 4.18747 4.22125 4.29114 4.34936 4.37996 4.40354 4.49423 4.57115 4.63621 4.68475 4.72406 4.80024 4.82620 4.85252 4.87598 4.99093 5.06270 5.07263 5.12037 5.18680 5.22896 5.27194 5.30357 5.55907 5.60698 5.66033 5.75415 5.80047 6.13380 6.23181 6.37907 6.41501 6.76269 6.97735 7.34561 8.87225 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011526 B = 0.004425 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.662229 B = 6326.672007 C = 8000.501973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.341 6.341 3 C 0.113 3.887 4 C -0.166 4.166 5 C -0.063 4.063 6 C 0.075 3.925 7 N -0.488 5.488 8 C 0.121 3.879 9 C -0.158 4.158 10 C -0.029 4.029 11 C 0.092 3.908 12 N -0.541 5.541 13 C 0.066 3.934 14 C -0.113 4.113 15 C -0.110 4.110 16 C 0.021 3.979 17 H 0.027 0.973 18 C -0.511 4.511 19 H 0.033 0.967 20 C 0.018 3.982 21 N -0.949 5.949 22 Si 0.935 3.065 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.244 1.244 26 C 0.087 3.913 27 C -0.059 4.059 28 C -0.146 4.146 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.192 0.808 35 H 0.162 0.838 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.048 0.952 44 H 0.265 0.735 45 H 0.057 0.943 46 H 0.023 0.977 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.259 21.274 -7.468 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.255 6.255 3 C 0.068 3.932 4 C -0.186 4.186 5 C -0.081 4.081 6 C -0.046 4.046 7 N -0.197 5.197 8 C -0.051 4.051 9 C -0.178 4.178 10 C -0.037 4.037 11 C -0.035 4.035 12 N -0.266 5.266 13 C -0.061 4.061 14 C -0.151 4.151 15 C -0.149 4.149 16 C 0.002 3.998 17 H 0.045 0.955 18 C -0.550 4.550 19 H 0.052 0.948 20 C -0.180 4.180 21 N -0.589 5.589 22 Si 0.760 3.240 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.167 1.167 26 C -0.041 4.041 27 C -0.061 4.061 28 C -0.166 4.166 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.086 0.914 32 H 0.183 0.817 33 H 0.176 0.824 34 H 0.209 0.791 35 H 0.180 0.820 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.041 0.959 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.322 21.528 -7.284 25.852 hybrid contribution 0.837 -1.563 0.329 1.803 sum -11.485 19.965 -6.955 24.060 Atomic orbital electron populations 1.23389 0.76295 1.05532 1.02652 1.86141 1.23762 1.26937 1.88628 1.18913 0.92245 0.85114 0.96953 1.21328 1.01792 0.90961 1.04527 1.20861 0.91894 0.98453 0.96901 1.19097 0.94960 0.88227 1.02320 1.67992 1.13075 1.25493 1.13116 1.23420 0.88310 1.00243 0.93145 1.22104 1.02991 0.91794 1.00935 1.20084 0.92242 0.95791 0.95627 1.21019 0.97646 0.93337 0.91517 1.61940 1.56813 1.02778 1.05081 1.22024 0.96743 0.95970 0.91406 1.21605 1.00520 0.96185 0.96762 1.21761 0.99247 0.94986 0.98867 1.19071 0.95604 0.92648 0.92499 0.95507 1.21239 1.09468 0.94148 1.30133 0.94836 1.25809 0.99940 0.94489 0.97713 1.70050 1.43767 1.00919 1.44190 0.85911 0.79858 0.79393 0.78831 1.20144 1.21323 1.16739 1.21901 0.95586 0.88011 0.98559 1.18440 0.94042 0.93274 1.00380 1.20235 0.92400 0.97732 1.06234 0.90760 0.87024 0.91379 0.81709 0.82409 0.79096 0.82002 0.90022 0.91832 0.94294 0.90218 0.93123 0.90111 0.94373 0.93340 0.92631 0.92484 0.95912 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.80 113.37 1.11 1.35 16 2 O -0.34 -9.21 10.47 -92.35 -0.97 -10.18 16 3 C 0.11 3.07 6.64 22.27 0.15 3.22 16 4 C -0.17 -3.45 8.93 22.13 0.20 -3.26 16 5 C -0.06 -1.37 9.98 22.33 0.22 -1.14 16 6 C 0.07 1.96 6.61 40.31 0.27 2.23 16 7 N -0.49 -11.84 10.34 -188.58 -1.95 -13.79 16 8 C 0.12 2.28 11.15 85.07 0.95 3.23 16 9 C -0.16 -3.03 9.10 22.14 0.20 -2.83 16 10 C -0.03 -0.72 4.46 -19.63 -0.09 -0.81 16 11 C 0.09 2.46 4.29 85.56 0.37 2.83 16 12 N -0.54 -17.77 4.40 -900.94 -3.97 -21.74 16 13 C 0.07 1.94 5.31 86.32 0.46 2.40 16 14 C -0.11 -3.72 6.09 30.65 0.19 -3.53 16 15 C -0.11 -4.55 5.07 30.67 0.16 -4.39 16 16 C 0.02 0.99 1.80 -11.49 -0.02 0.97 16 17 H 0.03 1.32 5.61 -2.38 -0.01 1.30 16 18 C -0.51 -29.19 8.86 25.60 0.23 -28.96 16 19 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 20 C 0.02 1.03 5.47 84.66 0.46 1.50 16 21 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 22 Si 0.94 45.77 26.59 68.60 1.82 47.60 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.24 -11.21 6.06 99.48 0.60 -10.61 16 26 C 0.09 3.48 4.72 86.33 0.41 3.89 16 27 C -0.06 -1.67 5.74 -21.28 -0.12 -1.79 16 28 C -0.15 -4.48 9.20 22.40 0.21 -4.27 16 29 H 0.07 0.85 7.64 -2.38 -0.02 0.83 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 0.89 7.64 -2.39 -0.02 0.87 16 32 H 0.17 2.21 6.22 -2.91 -0.02 2.19 16 33 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.16 2.14 8.01 -2.91 -0.02 2.11 16 36 H 0.08 2.27 7.27 -2.39 -0.02 2.25 16 37 H 0.06 1.47 7.94 -2.39 -0.02 1.45 16 38 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 2.09 6.69 -2.38 -0.02 2.07 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.04 1.65 7.08 -2.38 -0.02 1.63 16 43 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 45 H 0.06 2.38 8.00 -2.39 -0.02 2.36 16 46 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.12 4.24 6.70 -2.91 -0.02 4.22 16 Total: -1.00 -72.52 369.39 1.44 -71.08 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.86 Total: 15.94 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 5.34 Total: -29.38 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -5.62 Total: -95.05 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.97 Total: -10.18 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.82 Total: 47.60 kcal Total: -72.52 1.44 -71.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141150928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.833 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds