Wall clock time and date at job start Tue Mar 31 2020 14:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48498 * 109.47374 * 240.00131 * 3 2 1 5 5 H 1.48501 * 109.46984 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47011 * 120.00212 * 3 2 1 7 7 C 1.37880 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99672 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.46960 * 110.99717 * 169.99942 * 10 9 7 12 12 C 1.53052 * 109.36148 * 183.18916 * 11 10 9 13 13 N 1.46958 * 109.36198 * 301.59735 * 12 11 10 14 14 C 1.46901 * 110.99814 * 183.18890 * 13 12 11 15 15 C 1.50700 * 109.47219 * 170.00189 * 14 13 12 16 16 C 1.38300 * 119.97005 * 89.99818 * 15 14 13 17 17 C 1.38255 * 120.13010 * 179.97438 * 16 15 14 18 18 C 1.38145 * 120.06617 * 0.28349 * 17 16 15 19 19 C 1.38797 * 119.93377 * 359.48602 * 18 17 16 20 20 N 1.40233 * 120.06791 * 180.25675 * 19 18 17 21 21 C 1.37100 * 126.47030 * 0.23036 * 20 19 18 22 22 C 1.34658 * 106.83337 * 179.97438 * 21 20 19 23 23 N 1.34126 * 108.19294 * 0.02562 * 22 21 20 24 24 C 1.30512 * 109.35474 * 359.76217 * 23 22 21 25 25 C 1.38104 * 119.96374 * 270.02637 * 15 14 13 26 26 C 1.46960 * 110.88205 * 59.32488 * 13 12 11 27 27 C 1.46950 * 110.99812 * 293.80039 * 10 9 7 28 28 H 0.96998 * 119.99964 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47028 * 59.99693 * 9 7 2 30 30 H 1.09004 * 109.46624 * 300.00104 * 9 7 2 31 31 H 1.09000 * 109.48747 * 63.22080 * 11 10 9 32 32 H 1.09002 * 109.48527 * 303.15268 * 11 10 9 33 33 H 1.08991 * 109.48675 * 181.63427 * 12 11 10 34 34 H 1.09000 * 109.48948 * 61.56448 * 12 11 10 35 35 H 1.08998 * 109.47477 * 50.00066 * 14 13 12 36 36 H 1.09007 * 109.47229 * 289.99978 * 14 13 12 37 37 H 1.07999 * 119.93311 * 0.02562 * 16 15 14 38 38 H 1.08002 * 119.96336 * 179.97438 * 17 16 15 39 39 H 1.07998 * 120.03563 * 179.72213 * 18 17 16 40 40 H 1.08001 * 126.58432 * 359.97438 * 21 20 19 41 41 H 1.07999 * 125.90049 * 180.02562 * 22 21 20 42 42 H 1.08001 * 125.72262 * 180.23680 * 24 23 22 43 43 H 1.07997 * 120.03682 * 359.94910 * 25 15 14 44 44 H 1.08996 * 109.49092 * 60.64038 * 26 13 12 45 45 H 1.08995 * 109.48799 * 180.70997 * 26 13 12 46 46 H 1.09000 * 109.48762 * 296.77665 * 27 10 9 47 47 H 1.08996 * 109.49325 * 56.82212 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5208 -4.8940 0.2377 12 6 2.5563 -6.0188 0.3094 13 7 3.3193 -6.0593 -0.9459 14 6 4.2739 -7.1759 -0.9459 15 6 4.8579 -7.3375 -2.3257 16 6 6.0100 -6.6555 -2.6725 17 6 6.5490 -6.8017 -3.9373 18 6 5.9345 -7.6254 -4.8605 19 6 4.7808 -8.3149 -4.5138 20 7 4.1578 -9.1560 -5.4470 21 6 4.5734 -9.3982 -6.7308 22 6 3.6910 -10.2606 -7.2702 23 7 2.7600 -10.5400 -6.3460 24 6 3.0311 -9.8883 -5.2482 25 6 4.2418 -8.1661 -3.2428 26 6 4.0041 -4.7810 -1.1842 27 6 2.9686 -3.6562 -1.2558 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 0.8252 -5.0915 -0.5779 32 1 0.9733 -4.8433 1.1789 33 1 2.0484 -6.9717 0.4571 34 1 3.2355 -5.8353 1.1420 35 1 3.7600 -8.0933 -0.6592 36 1 5.0739 -6.9700 -0.2346 37 1 6.4901 -6.0080 -1.9537 38 1 7.4485 -6.2675 -4.2054 39 1 6.3534 -7.7358 -5.8497 40 1 5.4418 -8.9780 -7.2163 41 1 3.7268 -10.6584 -8.2736 42 1 2.4551 -9.9237 -4.3353 43 1 3.3424 -8.6987 -2.9714 44 1 4.6996 -4.5835 -0.3686 45 1 4.5516 -4.8317 -2.1253 46 1 2.2895 -3.8397 -2.0884 47 1 3.4762 -2.7031 -1.4038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141241938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:06 Heat of formation + Delta-G solvation = 109.917833 kcal Electronic energy + Delta-G solvation = -26871.065025 eV Core-core repulsion = 23248.008451 eV Total energy + Delta-G solvation = -3623.056574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.56604 -39.89700 -38.49924 -35.52933 -34.20220 -32.69850 -31.76607 -30.57771 -30.11985 -29.33855 -28.25824 -26.07879 -24.05674 -23.96448 -23.12779 -22.33460 -21.38262 -21.02246 -20.46209 -19.21196 -18.48561 -16.55635 -16.34317 -16.02379 -15.78879 -15.67915 -15.17127 -14.77913 -14.60086 -14.33861 -14.24443 -14.13707 -13.90772 -13.76690 -13.51563 -13.46548 -12.90511 -12.87001 -12.19808 -12.14510 -11.84760 -11.71990 -11.42387 -11.18383 -10.93894 -10.85963 -10.77185 -10.65090 -10.41260 -10.36523 -10.32267 -9.75919 -9.26774 -9.19509 -9.00236 -8.56069 -8.45175 -8.22318 -7.26130 -6.04185 -4.05915 0.55716 0.93874 2.00221 2.37163 2.84906 3.31459 3.35799 3.35895 3.38211 4.10151 4.23943 4.33986 4.40369 4.41275 4.53840 4.71737 4.88661 4.90365 4.93859 4.95231 5.12267 5.24676 5.31289 5.32026 5.37980 5.44414 5.50311 5.52967 5.65869 5.71365 5.77328 5.84866 6.00712 6.02772 6.11730 6.13024 6.23485 6.35060 6.39441 6.46980 6.55126 6.65486 6.96127 7.11073 7.11685 7.31734 7.34848 7.70722 7.77429 8.06868 8.18226 8.52848 9.01117 9.58252 11.06667 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.002418 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.524705 B =11577.668881 C =11641.224290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.062 3.938 13 N -0.534 5.534 14 C 0.090 3.910 15 C -0.042 4.042 16 C -0.116 4.116 17 C -0.092 4.092 18 C -0.135 4.135 19 C 0.128 3.872 20 N -0.408 5.408 21 C -0.055 4.055 22 C -0.025 4.025 23 N -0.488 5.488 24 C 0.191 3.809 25 C -0.111 4.111 26 C 0.055 3.945 27 C 0.068 3.932 28 H 0.262 0.738 29 H -0.009 1.009 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.176 0.824 41 H 0.174 0.826 42 H 0.209 0.791 43 H 0.132 0.868 44 H 0.039 0.961 45 H 0.072 0.928 46 H 0.028 0.972 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.096 -19.307 -8.143 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.066 4.066 13 N -0.259 5.259 14 C -0.038 4.038 15 C -0.043 4.043 16 C -0.135 4.135 17 C -0.111 4.111 18 C -0.155 4.155 19 C 0.036 3.964 20 N -0.086 5.086 21 C -0.186 4.186 22 C -0.171 4.171 23 N -0.205 5.205 24 C -0.090 4.090 25 C -0.131 4.131 26 C -0.073 4.073 27 C -0.061 4.061 28 H 0.072 0.928 29 H 0.009 0.991 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.194 0.806 41 H 0.191 0.809 42 H 0.225 0.775 43 H 0.150 0.850 44 H 0.057 0.943 45 H 0.091 0.909 46 H 0.046 0.954 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.272 -19.659 -8.210 24.587 hybrid contribution 1.024 1.560 0.002 1.866 sum 13.296 -18.099 -8.208 23.911 Atomic orbital electron populations 1.69946 1.06064 1.26907 1.50841 1.24992 0.94864 0.99300 0.95442 0.86565 0.79451 0.82801 0.78610 1.20282 1.21339 1.20189 1.21104 0.93365 0.89971 1.50264 0.92023 1.19695 0.90032 0.87262 0.96116 1.62297 1.28164 1.02764 1.33168 1.22065 0.94716 0.89956 1.00557 1.22176 0.96086 0.98736 0.89595 1.62207 1.25265 1.03131 1.35293 1.21052 0.94904 0.95904 0.91893 1.19636 0.94041 0.94821 0.95816 1.21234 0.96021 0.99299 0.96980 1.20994 0.99716 0.97413 0.92970 1.20814 0.95143 0.98816 1.00681 1.17808 0.94774 0.94530 0.89327 1.43243 1.21469 1.33257 1.10649 1.22758 1.04432 1.05952 0.85408 1.22363 0.93515 1.01063 1.00193 1.70338 1.26316 1.23645 1.00170 1.25309 0.88995 0.94383 1.00298 1.20653 1.00420 1.00928 0.91085 1.22345 0.96282 0.88449 1.00218 1.21974 0.95444 0.97352 0.91299 0.92841 0.99074 0.95227 0.95114 0.90912 0.91077 0.94127 0.89856 0.93494 0.85281 0.84939 0.85402 0.80634 0.80926 0.77471 0.85019 0.94282 0.90937 0.95404 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.17 8.47 -34.44 -0.29 -14.46 16 8 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 9 C 0.19 5.05 4.72 -4.97 -0.02 5.02 16 10 N -0.54 -11.50 4.70 -235.90 -1.11 -12.61 16 11 C 0.06 1.00 5.61 -3.76 -0.02 0.98 16 12 C 0.06 0.87 5.61 -3.77 -0.02 0.84 16 13 N -0.53 -7.22 4.70 -235.91 -1.11 -8.33 16 14 C 0.09 0.92 5.11 -4.98 -0.03 0.90 16 15 C -0.04 -0.41 4.89 -104.65 -0.51 -0.93 16 16 C -0.12 -1.05 7.91 -39.55 -0.31 -1.37 16 17 C -0.09 -0.75 10.04 -39.61 -0.40 -1.14 16 18 C -0.13 -1.15 9.47 -39.41 -0.37 -1.52 16 19 C 0.13 1.26 6.63 -83.58 -0.55 0.70 16 20 N -0.41 -4.15 2.99 -62.10 -0.19 -4.34 16 21 C -0.06 -0.50 10.86 -16.46 -0.18 -0.68 16 22 C -0.03 -0.25 11.85 -17.82 -0.21 -0.46 16 23 N -0.49 -5.97 11.24 -14.48 -0.16 -6.13 16 24 C 0.19 2.03 11.92 -89.64 -1.07 0.96 16 25 C -0.11 -1.08 9.12 -39.40 -0.36 -1.44 16 26 C 0.05 0.82 5.25 -3.76 -0.02 0.80 16 27 C 0.07 1.32 5.43 -3.77 -0.02 1.30 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 30 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 33 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.74 7.97 -51.93 -0.41 0.32 16 36 H 0.05 0.46 8.06 -51.92 -0.42 0.04 16 37 H 0.13 1.05 7.99 -52.49 -0.42 0.63 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.84 6.82 -52.49 -0.36 0.48 16 40 H 0.18 1.05 7.15 -52.49 -0.38 0.67 16 41 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.21 1.61 7.07 -52.49 -0.37 1.24 16 43 H 0.13 1.13 6.77 -52.49 -0.36 0.77 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.99 5.95 -51.93 -0.31 0.68 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 1.78 6.79 -51.93 -0.35 1.43 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -32.69 377.12 -12.75 -45.44 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -7.10 Total: -1.22 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -4.49 Total: -9.02 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -1.83 Total: -57.34 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.69 -12.75 -45.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141241938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.359 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds