Wall clock time and date at job start Tue Mar 31 2020 14:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48498 * 109.47374 * 240.00131 * 3 2 1 5 5 H 1.48501 * 109.46984 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47011 * 120.00212 * 3 2 1 7 7 C 1.37880 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99672 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.46960 * 110.99717 * 169.99942 * 10 9 7 12 12 C 1.53052 * 109.36148 * 183.18916 * 11 10 9 13 13 N 1.46958 * 109.36198 * 301.59735 * 12 11 10 14 14 C 1.46901 * 110.99814 * 183.18890 * 13 12 11 15 15 C 1.50700 * 109.47219 * 170.00189 * 14 13 12 16 16 C 1.38300 * 119.97005 * 89.99818 * 15 14 13 17 17 C 1.38255 * 120.13010 * 179.97438 * 16 15 14 18 18 C 1.38145 * 120.06617 * 0.28349 * 17 16 15 19 19 C 1.38797 * 119.93377 * 359.48602 * 18 17 16 20 20 N 1.40233 * 120.06791 * 180.25675 * 19 18 17 21 21 C 1.37100 * 126.47030 * 0.23036 * 20 19 18 22 22 C 1.34658 * 106.83337 * 179.97438 * 21 20 19 23 23 N 1.34126 * 108.19294 * 0.02562 * 22 21 20 24 24 C 1.30512 * 109.35474 * 359.76217 * 23 22 21 25 25 C 1.38104 * 119.96374 * 270.02637 * 15 14 13 26 26 C 1.46960 * 110.88205 * 59.32488 * 13 12 11 27 27 C 1.46950 * 110.99812 * 293.80039 * 10 9 7 28 28 H 0.96998 * 119.99964 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47028 * 59.99693 * 9 7 2 30 30 H 1.09004 * 109.46624 * 300.00104 * 9 7 2 31 31 H 1.09000 * 109.48747 * 63.22080 * 11 10 9 32 32 H 1.09002 * 109.48527 * 303.15268 * 11 10 9 33 33 H 1.08991 * 109.48675 * 181.63427 * 12 11 10 34 34 H 1.09000 * 109.48948 * 61.56448 * 12 11 10 35 35 H 1.08998 * 109.47477 * 50.00066 * 14 13 12 36 36 H 1.09007 * 109.47229 * 289.99978 * 14 13 12 37 37 H 1.07999 * 119.93311 * 0.02562 * 16 15 14 38 38 H 1.08002 * 119.96336 * 179.97438 * 17 16 15 39 39 H 1.07998 * 120.03563 * 179.72213 * 18 17 16 40 40 H 1.08001 * 126.58432 * 359.97438 * 21 20 19 41 41 H 1.07999 * 125.90049 * 180.02562 * 22 21 20 42 42 H 1.08001 * 125.72262 * 180.23680 * 24 23 22 43 43 H 1.07997 * 120.03682 * 359.94910 * 25 15 14 44 44 H 1.08996 * 109.49092 * 60.64038 * 26 13 12 45 45 H 1.08995 * 109.48799 * 180.70997 * 26 13 12 46 46 H 1.09000 * 109.48762 * 296.77665 * 27 10 9 47 47 H 1.08996 * 109.49325 * 56.82212 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5208 -4.8940 0.2377 12 6 2.5563 -6.0188 0.3094 13 7 3.3193 -6.0593 -0.9459 14 6 4.2739 -7.1759 -0.9459 15 6 4.8579 -7.3375 -2.3257 16 6 6.0100 -6.6555 -2.6725 17 6 6.5490 -6.8017 -3.9373 18 6 5.9345 -7.6254 -4.8605 19 6 4.7808 -8.3149 -4.5138 20 7 4.1578 -9.1560 -5.4470 21 6 4.5734 -9.3982 -6.7308 22 6 3.6910 -10.2606 -7.2702 23 7 2.7600 -10.5400 -6.3460 24 6 3.0311 -9.8883 -5.2482 25 6 4.2418 -8.1661 -3.2428 26 6 4.0041 -4.7810 -1.1842 27 6 2.9686 -3.6562 -1.2558 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 0.8252 -5.0915 -0.5779 32 1 0.9733 -4.8433 1.1789 33 1 2.0484 -6.9717 0.4571 34 1 3.2355 -5.8353 1.1420 35 1 3.7600 -8.0933 -0.6592 36 1 5.0739 -6.9700 -0.2346 37 1 6.4901 -6.0080 -1.9537 38 1 7.4485 -6.2675 -4.2054 39 1 6.3534 -7.7358 -5.8497 40 1 5.4418 -8.9780 -7.2163 41 1 3.7268 -10.6584 -8.2736 42 1 2.4551 -9.9237 -4.3353 43 1 3.3424 -8.6987 -2.9714 44 1 4.6996 -4.5835 -0.3686 45 1 4.5516 -4.8317 -2.1253 46 1 2.2895 -3.8397 -2.0884 47 1 3.4762 -2.7031 -1.4038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141241938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:06 Heat of formation + Delta-G solvation = 90.430407 kcal Electronic energy + Delta-G solvation = -26871.910063 eV Core-core repulsion = 23248.008451 eV Total energy + Delta-G solvation = -3623.901612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.28045 -40.74662 -39.66888 -36.86076 -35.15150 -34.50781 -32.74005 -31.86718 -30.97527 -30.02996 -29.78649 -27.54796 -25.40658 -24.80037 -24.29169 -23.43300 -22.91030 -21.73805 -21.18083 -20.60707 -19.18745 -18.49492 -17.31497 -17.18391 -16.55502 -16.52553 -16.38961 -15.99974 -15.83805 -15.69728 -15.38782 -15.05360 -15.02331 -14.88988 -14.56979 -14.42384 -14.07063 -13.76005 -13.67990 -13.42518 -13.08961 -12.91322 -12.71493 -12.59588 -12.45766 -12.24722 -12.14826 -12.08386 -11.84741 -11.61005 -11.44497 -11.19422 -11.13771 -10.62496 -9.92545 -9.72008 -9.35520 -9.20071 -9.03961 -8.21661 -6.32492 -0.12460 0.28187 1.30817 1.40311 1.43791 1.51715 1.69014 2.09344 2.39298 2.63077 3.10348 3.14330 3.29797 3.53162 3.68925 3.79735 3.87919 3.99963 4.07229 4.16766 4.21503 4.25089 4.29331 4.37893 4.45138 4.48096 4.51992 4.67122 4.68335 4.70867 4.79979 4.87017 4.89257 4.97557 5.00095 5.02419 5.05982 5.21287 5.26821 5.37984 5.43945 5.53545 5.62190 5.69828 5.80319 5.99736 6.05463 6.09238 6.26487 6.33226 6.61268 6.83217 6.97505 7.37382 8.89495 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.002418 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.524705 B =11577.668881 C =11641.224290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.064 0.936 9 C 0.209 3.791 10 N -0.543 5.543 11 C 0.052 3.948 12 C 0.072 3.928 13 N -0.544 5.544 14 C 0.094 3.906 15 C -0.055 4.055 16 C -0.122 4.122 17 C -0.092 4.092 18 C -0.135 4.135 19 C 0.111 3.889 20 N -0.411 5.411 21 C -0.053 4.053 22 C -0.046 4.046 23 N -0.523 5.523 24 C 0.177 3.823 25 C -0.119 4.119 26 C 0.071 3.929 27 C 0.069 3.931 28 H 0.265 0.735 29 H -0.044 1.044 30 H 0.004 0.996 31 H 0.017 0.983 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.139 0.861 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.206 0.794 41 H 0.192 0.808 42 H 0.225 0.775 43 H 0.137 0.863 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.008 0.992 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.824 -19.714 -8.388 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.082 0.918 9 C 0.082 3.918 10 N -0.268 5.268 11 C -0.076 4.076 12 C -0.055 4.055 13 N -0.269 5.269 14 C -0.032 4.032 15 C -0.056 4.056 16 C -0.141 4.141 17 C -0.111 4.111 18 C -0.155 4.155 19 C 0.019 3.981 20 N -0.089 5.089 21 C -0.183 4.183 22 C -0.192 4.192 23 N -0.241 5.241 24 C -0.104 4.104 25 C -0.139 4.139 26 C -0.057 4.057 27 C -0.059 4.059 28 H 0.073 0.927 29 H -0.026 1.026 30 H 0.022 0.978 31 H 0.036 0.964 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.062 0.938 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.157 0.843 38 H 0.175 0.825 39 H 0.165 0.835 40 H 0.223 0.777 41 H 0.209 0.791 42 H 0.242 0.758 43 H 0.155 0.845 44 H 0.061 0.939 45 H 0.108 0.892 46 H 0.026 0.974 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.024 -20.098 -8.453 26.479 hybrid contribution 0.161 1.625 0.039 1.634 sum 15.185 -18.473 -8.414 25.350 Atomic orbital electron populations 1.70087 1.07845 1.28018 1.51664 1.25960 0.95757 1.03352 0.94741 0.85412 0.78144 0.77713 0.79217 1.19105 1.20923 1.19128 1.21416 0.93601 0.90963 1.50221 0.91766 1.19344 0.90110 0.89152 0.93154 1.62240 1.27201 1.03082 1.34252 1.22189 0.95871 0.89669 0.99899 1.22085 0.95273 0.98190 0.89987 1.62146 1.26408 1.03314 1.35053 1.21093 0.94608 0.94951 0.92573 1.19650 0.94685 0.95584 0.95680 1.21455 0.95831 0.99158 0.97684 1.21300 1.00303 0.97050 0.92412 1.21126 0.94530 0.98122 1.01724 1.18012 0.95509 0.95119 0.89446 1.43354 1.21345 1.33137 1.11083 1.23277 1.04854 1.05192 0.84976 1.22811 0.93591 1.01805 1.00959 1.70306 1.27673 1.24876 1.01265 1.25688 0.89556 0.94483 1.00681 1.20791 1.00725 1.01082 0.91264 1.22123 0.94604 0.87666 1.01300 1.21963 0.95722 0.98609 0.89624 0.92665 1.02619 0.97825 0.96441 0.91015 0.87968 0.93794 0.88132 0.92426 0.84348 0.82513 0.83467 0.77674 0.79089 0.75845 0.84485 0.93934 0.89246 0.97379 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.02 13.29 21.45 0.28 -56.73 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.52 -29.91 8.47 25.60 0.22 -29.69 16 8 H 0.06 3.56 7.13 -2.91 -0.02 3.53 16 9 C 0.21 11.40 4.72 85.56 0.40 11.81 16 10 N -0.54 -23.77 4.70 -900.26 -4.23 -28.00 16 11 C 0.05 1.88 5.61 86.31 0.48 2.36 16 12 C 0.07 1.89 5.61 86.31 0.48 2.37 16 13 N -0.54 -13.62 4.70 -900.28 -4.23 -17.85 16 14 C 0.09 1.66 5.11 85.56 0.44 2.10 16 15 C -0.05 -0.95 4.89 -19.88 -0.10 -1.05 16 16 C -0.12 -1.86 7.91 22.29 0.18 -1.69 16 17 C -0.09 -1.20 10.04 22.25 0.22 -0.98 16 18 C -0.14 -1.94 9.47 22.38 0.21 -1.72 16 19 C 0.11 1.98 6.63 38.08 0.25 2.23 16 20 N -0.41 -7.82 2.99 -350.38 -1.05 -8.86 16 21 C -0.05 -0.87 10.86 83.05 0.90 0.03 16 22 C -0.05 -0.89 11.85 83.52 0.99 0.10 16 23 N -0.52 -12.72 11.24 -199.71 -2.25 -14.96 16 24 C 0.18 3.67 11.92 180.00 2.14 5.81 16 25 C -0.12 -2.09 9.12 22.38 0.20 -1.89 16 26 C 0.07 2.03 5.25 86.31 0.45 2.48 16 27 C 0.07 2.73 5.43 86.31 0.47 3.20 16 28 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 29 H -0.04 -2.65 8.12 -2.39 -0.02 -2.66 16 30 H 0.00 0.21 8.03 -2.39 -0.02 0.19 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 33 H 0.10 2.07 8.07 -2.39 -0.02 2.05 16 34 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 1.44 7.97 -2.39 -0.02 1.42 16 36 H 0.06 0.92 8.06 -2.38 -0.02 0.90 16 37 H 0.14 1.81 7.99 -2.91 -0.02 1.79 16 38 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.15 1.44 6.82 -2.91 -0.02 1.42 16 40 H 0.21 1.86 7.15 -2.91 -0.02 1.84 16 41 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 42 H 0.23 3.40 7.07 -2.91 -0.02 3.38 16 43 H 0.14 2.14 6.77 -2.91 -0.02 2.12 16 44 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.09 2.26 5.95 -2.39 -0.01 2.24 16 46 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 47 H 0.07 2.84 6.79 -2.39 -0.02 2.82 16 Total: -1.00 -72.92 377.12 -0.07 -72.99 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.95 Total: 11.29 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 8.42 Total: -4.08 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -11.47 Total: -126.40 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -72.92 -0.07 -72.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141241938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.424 kcal (2) G-P(sol) polarization free energy of solvation -72.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds