Wall clock time and date at job start Tue Mar 31 2020 14:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86797 * 119.99812 * 2 1 4 4 H 1.48501 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47034 * 299.99836 * 3 2 1 6 6 H 1.48497 * 109.47489 * 59.99725 * 3 2 1 7 7 C 1.40025 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00491 * 197.29726 * 7 2 1 9 9 C 1.41560 * 119.99681 * 17.30088 * 7 2 1 10 10 C 1.41182 * 120.99375 * 23.15399 * 9 7 2 11 11 C 1.36554 * 119.14973 * 180.02562 * 10 9 7 12 12 N 1.32102 * 121.26163 * 359.71251 * 11 10 9 13 13 C 1.32522 * 122.22020 * 0.57732 * 12 11 10 14 14 N 1.39087 * 119.66216 * 179.70043 * 13 12 11 15 15 C 1.46494 * 120.00175 * 179.72828 * 14 13 12 16 16 C 1.53002 * 109.47187 * 180.02562 * 15 14 13 17 17 C 1.52993 * 109.47410 * 180.02562 * 16 15 14 18 18 H 1.09004 * 109.17321 * 304.28427 * 17 16 15 19 19 C 1.50916 * 109.18334 * 63.52179 * 17 16 15 20 20 N 1.44745 * 116.65380 * 192.87748 * 19 17 16 21 21 C 1.47465 * 112.81049 * 286.16699 * 20 19 17 22 22 C 1.51955 * 107.03028 * 80.28037 * 21 20 19 23 23 C 1.34302 * 127.07135 * 115.35743 * 22 21 20 24 24 C 1.41163 * 107.12218 * 179.84116 * 23 22 21 25 25 C 1.35123 * 107.44456 * 0.02719 * 24 23 22 26 26 N 1.35871 * 107.95425 * 0.02627 * 25 24 23 27 27 C 1.47835 * 126.96544 * 179.91008 * 26 25 24 28 28 C 1.38752 * 120.68212 * 359.43320 * 13 12 11 29 29 H 0.97002 * 120.00547 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.42713 * 0.03698 * 10 9 7 31 31 H 1.08001 * 119.37275 * 179.97438 * 11 10 9 32 32 H 0.96997 * 119.99373 * 359.73570 * 14 13 12 33 33 H 1.09000 * 109.47114 * 60.00200 * 15 14 13 34 34 H 1.09000 * 109.47357 * 300.00339 * 15 14 13 35 35 H 1.09000 * 109.47283 * 59.99871 * 16 15 14 36 36 H 1.09000 * 109.46896 * 300.00189 * 16 15 14 37 37 H 1.09002 * 108.01738 * 314.70337 * 19 17 16 38 38 H 1.08998 * 108.01446 * 71.08596 * 19 17 16 39 39 H 1.00892 * 110.97916 * 51.45126 * 20 19 17 40 40 H 1.09000 * 109.94269 * 320.89562 * 21 20 19 41 41 H 1.09001 * 109.93860 * 199.65671 * 21 20 19 42 42 H 1.07997 * 126.43990 * 359.84186 * 23 22 21 43 43 H 1.07998 * 126.27439 * 180.02562 * 24 23 22 44 44 H 1.07999 * 126.02293 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.95015 * 124.82451 * 27 26 25 46 46 H 1.08994 * 110.01359 * 3.60614 * 27 26 25 47 47 H 1.08000 * 120.65992 * 180.29452 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0509 -1.2337 0.2786 9 6 1.3478 -2.4110 -0.3635 10 6 0.1897 -2.3870 -1.1706 11 6 -0.4170 -3.5655 -1.4986 12 7 0.0625 -4.7231 -1.0801 13 6 1.1423 -4.8061 -0.3164 14 7 1.5975 -6.0530 0.0990 15 6 2.7938 -6.1537 0.9385 16 6 3.0756 -7.6248 1.2505 17 6 4.3246 -7.7300 2.1278 18 1 5.1558 -7.2321 1.6284 19 6 4.0616 -7.0491 3.4487 20 7 5.2123 -6.7973 4.2898 21 6 5.7311 -8.0202 4.9301 22 6 6.5784 -8.7398 3.8941 23 6 7.9011 -8.9665 3.9460 24 6 8.2489 -9.6685 2.7717 25 6 7.1181 -9.8392 2.0519 26 7 6.0941 -9.2691 2.7393 27 6 4.6738 -9.2119 2.3331 28 6 1.8268 -3.6622 0.0687 29 1 -0.4851 0.8400 0.0004 30 1 -0.2113 -1.4485 -1.5241 31 1 -1.3034 -3.5513 -2.1155 32 1 1.1228 -6.8559 -0.1672 33 1 2.6317 -5.6092 1.8688 34 1 3.6455 -5.7250 0.4104 35 1 3.2378 -8.1690 0.3201 36 1 2.2240 -8.0538 1.7785 37 1 3.5771 -6.0941 3.2451 38 1 3.3610 -7.6654 4.0120 39 1 5.9388 -6.3225 3.7754 40 1 4.9029 -8.6573 5.2405 41 1 6.3428 -7.7572 5.7930 42 1 8.5726 -8.6680 4.7374 43 1 9.2374 -10.0071 2.4987 44 1 7.0418 -10.3403 1.0983 45 1 4.0456 -9.6369 3.1160 46 1 4.5296 -9.7603 1.4023 47 1 2.7094 -3.7305 0.6872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155458051.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:09 Heat of formation + Delta-G solvation = 79.599132 kcal Electronic energy + Delta-G solvation = -26715.100160 eV Core-core repulsion = 23090.728869 eV Total energy + Delta-G solvation = -3624.371291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.75876 -38.65354 -37.96506 -35.64858 -34.42067 -33.73005 -31.79897 -30.60673 -29.86945 -28.64614 -26.70970 -26.27277 -25.88485 -23.96038 -23.08723 -21.39193 -20.80929 -20.71628 -20.50426 -19.15889 -17.68705 -17.49792 -16.30720 -15.92544 -15.81067 -15.17572 -15.02379 -14.90483 -14.30644 -14.13232 -13.95882 -13.88360 -13.65593 -13.36179 -13.09235 -12.85944 -12.64292 -12.57541 -12.40866 -12.39499 -12.01781 -11.84820 -11.62854 -11.49713 -11.39777 -11.16021 -11.05620 -10.89217 -10.81973 -10.27481 -9.81997 -9.42120 -8.98091 -8.90448 -8.78075 -8.13668 -7.96385 -7.91653 -6.84273 -6.47968 -4.55685 2.04227 2.65198 2.78459 2.83810 3.03833 3.06422 3.10050 3.35067 3.86571 3.91381 4.10296 4.24838 4.27114 4.50111 4.66185 4.70826 4.83770 4.90754 4.98433 5.10021 5.15259 5.16592 5.31328 5.39314 5.48679 5.53308 5.56495 5.64614 5.77905 5.88281 6.02023 6.07992 6.13943 6.15412 6.19613 6.74904 6.76968 6.82983 6.89468 6.94919 7.00420 7.01730 7.14256 7.16129 7.27287 7.55449 7.83016 8.03948 8.09108 8.44014 8.69519 8.83594 8.90026 9.77020 10.10651 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.002480 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.521358 B =11285.545623 C =12467.287293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.155 3.845 10 C -0.245 4.245 11 C 0.115 3.885 12 N -0.625 5.625 13 C 0.396 3.604 14 N -0.746 5.746 15 C 0.142 3.858 16 C -0.118 4.118 17 C -0.130 4.130 18 H 0.082 0.918 19 C 0.051 3.949 20 N -0.678 5.678 21 C 0.127 3.873 22 C -0.028 4.028 23 C -0.189 4.189 24 C -0.207 4.207 25 C -0.012 4.012 26 N -0.441 5.441 27 C 0.109 3.891 28 C -0.335 4.335 29 H 0.281 0.719 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.388 0.612 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.349 0.651 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.159 0.841 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.423 -15.513 6.670 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.147 3.853 10 C -0.270 4.270 11 C -0.034 4.034 12 N -0.349 5.349 13 C 0.166 3.834 14 N -0.383 5.383 15 C 0.016 3.984 16 C -0.157 4.157 17 C -0.152 4.152 18 H 0.100 0.900 19 C -0.079 4.079 20 N -0.305 5.305 21 C -0.002 4.002 22 C -0.141 4.141 23 C -0.215 4.215 24 C -0.232 4.232 25 C -0.143 4.143 26 N -0.117 5.117 27 C -0.012 4.012 28 C -0.362 4.362 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.222 0.778 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.168 0.832 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.176 0.824 45 H 0.104 0.896 46 H 0.114 0.886 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.162 -15.851 6.971 19.591 hybrid contribution 1.079 0.736 -0.758 1.509 sum 10.240 -15.116 6.214 19.286 Atomic orbital electron populations 1.69813 1.07721 1.29316 1.33948 1.25971 0.94725 1.01490 0.91894 0.86245 0.81057 0.80715 0.78649 1.18280 1.19595 1.19860 1.19616 0.97974 0.90893 1.40138 0.90237 1.17608 0.89879 0.91664 0.86176 1.21789 1.01471 0.98138 1.05591 1.21352 0.97256 0.87880 0.96930 1.66732 1.16582 1.29786 1.21798 1.17925 0.90163 0.84521 0.90813 1.44050 1.30501 1.05417 1.58326 1.21109 0.88179 0.94485 0.94626 1.21683 0.96849 0.97746 0.99459 1.21885 0.99567 0.94820 0.98937 0.89961 1.21472 0.93576 1.02138 0.90744 1.60143 1.11096 1.22916 1.36352 1.21127 0.96421 0.88891 0.93776 1.21516 0.95145 1.06119 0.91361 1.20611 0.93869 1.06599 1.00391 1.21002 0.97782 1.07352 0.97030 1.21792 0.87141 1.05467 0.99872 1.44326 1.07346 1.43214 1.16808 1.22479 0.79126 0.97758 1.01869 1.21109 1.07395 0.92184 1.15477 0.90756 0.85901 0.86464 0.77827 0.92262 0.92950 0.91065 0.90885 0.89216 0.91383 0.83163 0.90384 0.88255 0.84839 0.84938 0.82357 0.89562 0.88628 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.97 10.90 55.55 0.61 -19.36 16 2 C 0.08 1.96 5.19 -17.35 -0.09 1.87 16 3 Si 0.91 18.34 29.59 -169.99 -5.03 13.31 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.03 9.12 -37.65 -0.34 -12.37 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 9 C 0.15 4.18 5.61 -106.56 -0.60 3.59 16 10 C -0.25 -6.47 8.75 -39.07 -0.34 -6.81 16 11 C 0.12 2.83 11.10 -18.04 -0.20 2.63 16 12 N -0.63 -15.32 10.37 -12.82 -0.13 -15.46 16 13 C 0.40 9.23 7.65 -154.98 -1.19 8.04 16 14 N -0.75 -13.36 5.73 -60.48 -0.35 -13.70 16 15 C 0.14 2.00 4.63 -4.04 -0.02 1.98 16 16 C -0.12 -1.13 4.74 -26.73 -0.13 -1.26 16 17 C -0.13 -1.14 2.16 -91.35 -0.20 -1.34 16 18 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 19 C 0.05 0.49 5.08 -6.03 -0.03 0.45 16 20 N -0.68 -6.56 6.70 -116.70 -0.78 -7.34 16 21 C 0.13 1.10 6.60 -4.05 -0.03 1.07 16 22 C -0.03 -0.28 5.97 -81.53 -0.49 -0.77 16 23 C -0.19 -1.96 10.81 -39.86 -0.43 -2.39 16 24 C -0.21 -2.11 10.88 -39.58 -0.43 -2.54 16 25 C -0.01 -0.12 11.51 -16.87 -0.19 -0.31 16 26 N -0.44 -4.22 2.78 -111.00 -0.31 -4.53 16 27 C 0.11 0.84 5.88 -2.99 -0.02 0.83 16 28 C -0.33 -8.33 9.12 -38.44 -0.35 -8.68 16 29 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 30 H 0.12 3.29 6.16 -52.48 -0.32 2.96 16 31 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 32 H 0.39 6.33 8.60 -40.82 -0.35 5.98 16 33 H 0.06 0.89 5.98 -51.93 -0.31 0.58 16 34 H 0.05 0.80 7.93 -51.93 -0.41 0.38 16 35 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.00 5.75 -51.93 -0.30 0.70 16 38 H 0.07 0.61 7.55 -51.93 -0.39 0.22 16 39 H 0.35 3.51 8.54 -39.30 -0.34 3.18 16 40 H 0.08 0.63 7.76 -51.93 -0.40 0.23 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.09 0.61 7.88 -51.93 -0.41 0.20 16 46 H 0.10 0.62 7.91 -51.93 -0.41 0.21 16 47 H 0.10 2.24 6.71 -52.49 -0.35 1.89 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -30.03 373.81 -12.35 -42.39 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -6.92 Total: 15.10 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -5.07 Total: -16.03 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.96 Total: -60.40 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.03 -12.35 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155458051.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.986 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds