Wall clock time and date at job start Tue Mar 31 2020 14:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86797 * 119.99812 * 2 1 4 4 H 1.48501 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47034 * 299.99836 * 3 2 1 6 6 H 1.48497 * 109.47489 * 59.99725 * 3 2 1 7 7 C 1.40025 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00491 * 197.29726 * 7 2 1 9 9 C 1.41560 * 119.99681 * 17.30088 * 7 2 1 10 10 C 1.41182 * 120.99375 * 23.15399 * 9 7 2 11 11 C 1.36554 * 119.14973 * 180.02562 * 10 9 7 12 12 N 1.32102 * 121.26163 * 359.71251 * 11 10 9 13 13 C 1.32522 * 122.22020 * 0.57732 * 12 11 10 14 14 N 1.39087 * 119.66216 * 179.70043 * 13 12 11 15 15 C 1.46494 * 120.00175 * 179.72828 * 14 13 12 16 16 C 1.53002 * 109.47187 * 180.02562 * 15 14 13 17 17 C 1.52993 * 109.47410 * 180.02562 * 16 15 14 18 18 H 1.09004 * 109.17321 * 304.28427 * 17 16 15 19 19 C 1.50916 * 109.18334 * 63.52179 * 17 16 15 20 20 N 1.44745 * 116.65380 * 192.87748 * 19 17 16 21 21 C 1.47465 * 112.81049 * 286.16699 * 20 19 17 22 22 C 1.51955 * 107.03028 * 80.28037 * 21 20 19 23 23 C 1.34302 * 127.07135 * 115.35743 * 22 21 20 24 24 C 1.41163 * 107.12218 * 179.84116 * 23 22 21 25 25 C 1.35123 * 107.44456 * 0.02719 * 24 23 22 26 26 N 1.35871 * 107.95425 * 0.02627 * 25 24 23 27 27 C 1.47835 * 126.96544 * 179.91008 * 26 25 24 28 28 C 1.38752 * 120.68212 * 359.43320 * 13 12 11 29 29 H 0.97002 * 120.00547 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.42713 * 0.03698 * 10 9 7 31 31 H 1.08001 * 119.37275 * 179.97438 * 11 10 9 32 32 H 0.96997 * 119.99373 * 359.73570 * 14 13 12 33 33 H 1.09000 * 109.47114 * 60.00200 * 15 14 13 34 34 H 1.09000 * 109.47357 * 300.00339 * 15 14 13 35 35 H 1.09000 * 109.47283 * 59.99871 * 16 15 14 36 36 H 1.09000 * 109.46896 * 300.00189 * 16 15 14 37 37 H 1.09002 * 108.01738 * 314.70337 * 19 17 16 38 38 H 1.08998 * 108.01446 * 71.08596 * 19 17 16 39 39 H 1.00892 * 110.97916 * 51.45126 * 20 19 17 40 40 H 1.09000 * 109.94269 * 320.89562 * 21 20 19 41 41 H 1.09001 * 109.93860 * 199.65671 * 21 20 19 42 42 H 1.07997 * 126.43990 * 359.84186 * 23 22 21 43 43 H 1.07998 * 126.27439 * 180.02562 * 24 23 22 44 44 H 1.07999 * 126.02293 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.95015 * 124.82451 * 27 26 25 46 46 H 1.08994 * 110.01359 * 3.60614 * 27 26 25 47 47 H 1.08000 * 120.65992 * 180.29452 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0509 -1.2337 0.2786 9 6 1.3478 -2.4110 -0.3635 10 6 0.1897 -2.3870 -1.1706 11 6 -0.4170 -3.5655 -1.4986 12 7 0.0625 -4.7231 -1.0801 13 6 1.1423 -4.8061 -0.3164 14 7 1.5975 -6.0530 0.0990 15 6 2.7938 -6.1537 0.9385 16 6 3.0756 -7.6248 1.2505 17 6 4.3246 -7.7300 2.1278 18 1 5.1558 -7.2321 1.6284 19 6 4.0616 -7.0491 3.4487 20 7 5.2123 -6.7973 4.2898 21 6 5.7311 -8.0202 4.9301 22 6 6.5784 -8.7398 3.8941 23 6 7.9011 -8.9665 3.9460 24 6 8.2489 -9.6685 2.7717 25 6 7.1181 -9.8392 2.0519 26 7 6.0941 -9.2691 2.7393 27 6 4.6738 -9.2119 2.3331 28 6 1.8268 -3.6622 0.0687 29 1 -0.4851 0.8400 0.0004 30 1 -0.2113 -1.4485 -1.5241 31 1 -1.3034 -3.5513 -2.1155 32 1 1.1228 -6.8559 -0.1672 33 1 2.6317 -5.6092 1.8688 34 1 3.6455 -5.7250 0.4104 35 1 3.2378 -8.1690 0.3201 36 1 2.2240 -8.0538 1.7785 37 1 3.5771 -6.0941 3.2451 38 1 3.3610 -7.6654 4.0120 39 1 5.9388 -6.3225 3.7754 40 1 4.9029 -8.6573 5.2405 41 1 6.3428 -7.7572 5.7930 42 1 8.5726 -8.6680 4.7374 43 1 9.2374 -10.0071 2.4987 44 1 7.0418 -10.3403 1.0983 45 1 4.0456 -9.6369 3.1160 46 1 4.5296 -9.7603 1.4023 47 1 2.7094 -3.7305 0.6872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155458051.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:08 Heat of formation + Delta-G solvation = 62.049735 kcal Electronic energy + Delta-G solvation = -26715.861159 eV Core-core repulsion = 23090.728869 eV Total energy + Delta-G solvation = -3625.132290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46494 -40.35486 -38.94909 -36.92705 -35.88056 -35.02913 -32.79558 -32.50680 -30.77256 -29.95535 -27.96728 -27.83556 -26.97178 -24.86870 -24.16405 -23.05062 -22.45655 -21.54205 -21.43428 -19.87280 -19.46887 -18.32264 -17.66391 -17.17176 -16.88796 -16.65116 -16.37890 -15.90478 -15.75712 -15.41703 -15.26362 -14.88596 -14.63104 -14.46897 -14.29090 -14.20927 -14.15563 -13.74892 -13.33657 -13.20585 -13.14679 -12.94572 -12.84329 -12.72400 -12.61880 -12.54672 -12.26719 -11.97923 -11.94023 -11.74805 -11.69083 -11.25060 -10.61283 -9.93271 -9.85455 -9.68839 -9.51524 -8.87074 -8.71231 -8.23758 -6.55602 0.96566 1.18168 1.31691 1.38847 1.54008 1.59351 1.96912 2.08881 2.18895 2.54358 2.79840 3.33844 3.48206 3.56638 3.78285 3.81929 3.95969 4.12302 4.17835 4.20470 4.24460 4.34656 4.37604 4.44009 4.48133 4.62081 4.68993 4.77877 4.83203 4.86088 4.91160 4.98151 5.00070 5.04975 5.10451 5.21480 5.24864 5.31553 5.36311 5.42083 5.61882 5.90723 6.02980 6.09598 6.11586 6.26568 6.38107 6.39215 6.47974 6.55791 6.86387 6.91218 7.06423 7.87999 8.26235 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.002480 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.521358 B =11285.545623 C =12467.287293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.263 1.263 7 C -0.488 4.488 8 H 0.077 0.923 9 C 0.126 3.874 10 C -0.272 4.272 11 C 0.116 3.884 12 N -0.634 5.634 13 C 0.397 3.603 14 N -0.732 5.732 15 C 0.139 3.861 16 C -0.102 4.102 17 C -0.116 4.116 18 H 0.065 0.935 19 C 0.053 3.947 20 N -0.685 5.685 21 C 0.132 3.868 22 C -0.036 4.036 23 C -0.209 4.209 24 C -0.227 4.227 25 C -0.019 4.019 26 N -0.445 5.445 27 C 0.110 3.890 28 C -0.356 4.356 29 H 0.292 0.708 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.400 0.600 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.345 0.655 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.180 0.820 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.675 -16.533 6.887 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.178 4.178 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.187 1.187 7 C -0.518 4.518 8 H 0.095 0.905 9 C 0.118 3.882 10 C -0.297 4.297 11 C -0.034 4.034 12 N -0.359 5.359 13 C 0.164 3.836 14 N -0.368 5.368 15 C 0.015 3.985 16 C -0.141 4.141 17 C -0.138 4.138 18 H 0.084 0.916 19 C -0.078 4.078 20 N -0.312 5.312 21 C 0.003 3.997 22 C -0.150 4.150 23 C -0.234 4.234 24 C -0.252 4.252 25 C -0.150 4.150 26 N -0.120 5.120 27 C -0.010 4.010 28 C -0.383 4.383 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.162 0.838 32 H 0.235 0.765 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.163 0.837 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.197 0.803 45 H 0.118 0.882 46 H 0.133 0.867 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.419 -16.928 7.207 20.669 hybrid contribution 1.000 0.982 -0.791 1.609 sum 10.419 -15.946 6.416 20.100 Atomic orbital electron populations 1.69848 1.09169 1.30953 1.33620 1.26858 0.95523 1.04709 0.90750 0.85101 0.79365 0.75726 0.79184 1.18156 1.18586 1.18750 1.19875 0.98172 0.92085 1.41708 0.90462 1.18019 0.90589 0.92837 0.86737 1.21760 1.02369 0.98390 1.07162 1.21754 0.97666 0.87501 0.96448 1.66898 1.17088 1.29452 1.22412 1.18208 0.89427 0.86133 0.89786 1.44144 1.31090 1.03936 1.57644 1.21276 0.86160 0.97799 0.93276 1.21556 0.97763 0.94303 1.00497 1.21698 0.98427 0.95705 0.97981 0.91650 1.21429 0.93650 1.01342 0.91340 1.60145 1.11047 1.23583 1.36400 1.21174 0.96631 0.88353 0.93590 1.21716 0.95272 1.06145 0.91826 1.20872 0.94476 1.07130 1.00943 1.21278 0.98658 1.07885 0.97359 1.22199 0.87013 1.05211 1.00527 1.44474 1.07995 1.42940 1.16613 1.22576 0.78395 0.96733 1.03337 1.21213 1.08166 0.92423 1.16464 0.89707 0.87028 0.83813 0.76519 0.93141 0.94159 0.89630 0.89282 0.91244 0.90413 0.83681 0.89556 0.87443 0.84230 0.84097 0.80277 0.88248 0.86716 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.90 10.90 21.84 0.24 -41.66 16 2 C 0.04 1.95 5.19 85.29 0.44 2.39 16 3 Si 0.99 37.52 29.59 68.60 2.03 39.55 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.49 -26.52 9.12 23.52 0.21 -26.31 16 8 H 0.08 4.07 7.90 -2.91 -0.02 4.04 16 9 C 0.13 7.03 5.61 -21.12 -0.12 6.91 16 10 C -0.27 -14.72 8.75 22.60 0.20 -14.52 16 11 C 0.12 5.73 11.10 84.26 0.94 6.66 16 12 N -0.63 -30.83 10.37 -194.46 -2.02 -32.85 16 13 C 0.40 18.46 7.65 132.91 1.02 19.48 16 14 N -0.73 -25.40 5.73 -345.25 -1.98 -27.38 16 15 C 0.14 3.83 4.63 86.38 0.40 4.22 16 16 C -0.10 -1.72 4.74 30.59 0.14 -1.57 16 17 C -0.12 -1.83 2.16 -11.26 -0.02 -1.86 16 18 H 0.07 1.29 8.09 -2.38 -0.02 1.27 16 19 C 0.05 0.95 5.08 86.03 0.44 1.38 16 20 N -0.68 -12.76 6.70 -523.14 -3.50 -16.27 16 21 C 0.13 2.10 6.60 85.85 0.57 2.66 16 22 C -0.04 -0.68 5.97 41.42 0.25 -0.43 16 23 C -0.21 -4.18 10.81 22.09 0.24 -3.94 16 24 C -0.23 -4.43 10.88 22.27 0.24 -4.19 16 25 C -0.02 -0.33 11.51 83.35 0.96 0.63 16 26 N -0.44 -7.67 2.78 -505.09 -1.40 -9.07 16 27 C 0.11 1.40 5.88 86.33 0.51 1.90 16 28 C -0.36 -18.13 9.12 23.01 0.21 -17.92 16 29 H 0.29 13.43 8.29 -92.71 -0.77 12.66 16 30 H 0.11 6.17 6.16 -2.91 -0.02 6.16 16 31 H 0.14 6.14 8.06 -2.91 -0.02 6.11 16 32 H 0.40 12.19 8.60 -92.71 -0.80 11.39 16 33 H 0.05 1.51 5.98 -2.39 -0.01 1.50 16 34 H 0.04 1.22 7.93 -2.39 -0.02 1.20 16 35 H 0.09 1.26 8.04 -2.39 -0.02 1.24 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.53 5.75 -2.39 -0.01 1.52 16 38 H 0.08 1.24 7.55 -2.39 -0.02 1.23 16 39 H 0.34 6.90 8.54 -89.70 -0.77 6.14 16 40 H 0.09 1.23 7.76 -2.39 -0.02 1.21 16 41 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 43 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 44 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 45 H 0.10 1.06 7.88 -2.39 -0.02 1.04 16 46 H 0.11 1.06 7.91 -2.39 -0.02 1.04 16 47 H 0.10 4.85 6.71 -2.91 -0.02 4.83 16 Total: -1.00 -65.84 373.81 -0.58 -66.42 By element: Atomic # 1 Polarization: 46.31 SS G_CDS: -0.56 Total: 45.74 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 6.62 Total: -24.49 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -8.66 Total: -127.23 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -65.84 -0.58 -66.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155458051.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.469 kcal (2) G-P(sol) polarization free energy of solvation -65.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds