Wall clock time and date at job start Tue Mar 31 2020 14:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86805 * 119.99708 * 2 1 4 4 H 1.48493 * 109.47207 * 275.39385 * 3 2 1 5 5 H 1.48501 * 109.46839 * 35.39385 * 3 2 1 6 6 H 1.48500 * 109.46961 * 155.38945 * 3 2 1 7 7 C 1.40020 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00066 * 341.61972 * 7 2 1 9 9 C 1.41551 * 120.00436 * 161.62063 * 7 2 1 10 10 C 1.41187 * 120.99056 * 330.84287 * 9 7 2 11 11 C 1.36553 * 119.14753 * 180.02562 * 10 9 7 12 12 N 1.32097 * 121.26756 * 359.72191 * 11 10 9 13 13 C 1.32537 * 122.21607 * 0.56746 * 12 11 10 14 14 N 1.39081 * 119.65880 * 179.70942 * 13 12 11 15 15 C 1.46495 * 120.00189 * 179.73179 * 14 13 12 16 16 C 1.52998 * 109.47368 * 179.97438 * 15 14 13 17 17 C 1.52992 * 109.47109 * 180.02562 * 16 15 14 18 18 H 1.08999 * 109.17590 * 54.28460 * 17 16 15 19 19 C 1.50927 * 109.17781 * 294.99735 * 17 16 15 20 20 N 1.44759 * 116.64334 * 167.10325 * 19 17 16 21 21 C 1.47457 * 112.78502 * 73.85806 * 20 19 17 22 22 C 1.51951 * 107.03049 * 279.69890 * 21 20 19 23 23 C 1.34303 * 127.06396 * 244.43935 * 22 21 20 24 24 C 1.41159 * 107.11843 * 179.97438 * 23 22 21 25 25 C 1.35115 * 107.44646 * 0.38350 * 24 23 22 26 26 N 1.35874 * 107.96002 * 359.71089 * 25 24 23 27 27 C 1.47831 * 126.97081 * 180.16039 * 26 25 24 28 28 C 1.38741 * 120.67988 * 359.43759 * 13 12 11 29 29 H 0.96996 * 120.00173 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.42635 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.37026 * 179.97438 * 11 10 9 32 32 H 0.97004 * 119.99818 * 359.73191 * 14 13 12 33 33 H 1.09000 * 109.47090 * 59.99941 * 15 14 13 34 34 H 1.08998 * 109.47187 * 300.00277 * 15 14 13 35 35 H 1.09000 * 109.47037 * 59.99941 * 16 15 14 36 36 H 1.09000 * 109.46707 * 300.00230 * 16 15 14 37 37 H 1.08999 * 108.01056 * 45.29886 * 19 17 16 38 38 H 1.08998 * 108.01320 * 288.91394 * 19 17 16 39 39 H 1.00897 * 110.99934 * 199.13846 * 20 19 17 40 40 H 1.09010 * 109.94175 * 160.32124 * 21 20 19 41 41 H 1.09000 * 109.94712 * 39.08570 * 21 20 19 42 42 H 1.07991 * 126.43991 * 0.06365 * 23 22 21 43 43 H 1.08003 * 126.27209 * 180.13102 * 24 23 22 44 44 H 1.08003 * 126.01834 * 179.72981 * 25 24 23 45 45 H 1.08997 * 109.94717 * 356.37525 * 27 26 25 46 46 H 1.08999 * 110.01761 * 235.15712 * 27 26 25 47 47 H 1.08001 * 120.65921 * 180.25122 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3749 2.1123 -1.3938 5 1 1.5004 2.6171 0.8109 6 1 3.5913 1.4101 0.5831 7 6 2.0076 -1.2126 -0.0005 8 1 1.5091 -2.1242 0.2940 9 6 3.3690 -1.2437 -0.3871 10 6 3.8838 -0.3088 -1.3114 11 6 5.2030 -0.3736 -1.6581 12 7 6.0035 -1.2887 -1.1416 13 6 5.5745 -2.1944 -0.2743 14 7 6.4626 -3.1377 0.2316 15 6 5.9978 -4.1386 1.1951 16 6 7.1637 -5.0480 1.5882 17 6 6.6781 -6.0937 2.5940 18 1 5.8205 -6.6211 2.1762 19 6 6.2611 -5.4001 3.8679 20 7 5.5103 -6.1897 4.8211 21 6 6.3474 -7.1727 5.5334 22 6 6.5235 -8.3628 4.6053 23 6 6.0811 -9.6155 4.8024 24 6 6.4753 -10.3767 3.6809 25 6 7.1510 -9.5532 2.8496 26 7 7.1797 -8.3182 3.4153 27 6 7.8084 -7.1006 2.8607 28 6 4.2500 -2.2079 0.1383 29 1 -0.4850 0.8400 0.0004 30 1 3.2423 0.4473 -1.7393 31 1 5.6005 0.3394 -2.3652 32 1 7.3898 -3.1328 -0.0535 33 1 5.2066 -4.7373 0.7439 34 1 5.6125 -3.6369 2.0828 35 1 7.9552 -4.4496 2.0393 36 1 7.5485 -5.5496 0.7003 37 1 5.6572 -4.5338 3.5979 38 1 7.1612 -5.0380 4.3647 39 1 5.0157 -5.5974 5.4712 40 1 5.8513 -7.4875 6.4516 41 1 7.3185 -6.7353 5.7656 42 1 5.5267 -9.9728 5.6575 43 1 6.2770 -11.4260 3.5191 44 1 7.5905 -9.8282 1.9022 45 1 8.3223 -7.3387 1.9294 46 1 8.5148 -6.6850 3.5793 47 1 3.9017 -2.9436 0.8481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155458053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:12 Heat of formation + Delta-G solvation = 84.667639 kcal Electronic energy + Delta-G solvation = -26763.934465 eV Core-core repulsion = 23139.782961 eV Total energy + Delta-G solvation = -3624.151505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57287 -38.86384 -37.98977 -35.76126 -34.43355 -33.74578 -31.85386 -31.20377 -29.95236 -28.88564 -26.91502 -26.29183 -25.91585 -24.06579 -23.09943 -21.21400 -21.12394 -20.65788 -20.29035 -19.02462 -17.77508 -17.34287 -16.54394 -16.11628 -15.80042 -15.55137 -15.07240 -14.92370 -14.69754 -14.29249 -14.23728 -13.80676 -13.67425 -13.20984 -13.12966 -13.03643 -12.88334 -12.74446 -12.37975 -12.29200 -12.14253 -11.85263 -11.62124 -11.56490 -11.43983 -11.03974 -10.98939 -10.87017 -10.75812 -10.56830 -9.78376 -9.40296 -9.11270 -8.77475 -8.63838 -8.20173 -8.09490 -8.09213 -7.02186 -6.75200 -4.67296 2.18264 2.60952 2.77884 2.79913 2.95890 3.10883 3.20460 3.31741 3.75936 3.93663 3.95487 4.27021 4.39984 4.59152 4.60141 4.73335 4.83800 4.89947 5.01379 5.10220 5.12333 5.16548 5.25783 5.31054 5.45753 5.50998 5.57084 5.60354 5.65592 5.79112 5.87408 6.08317 6.10105 6.21720 6.27140 6.44100 6.52804 6.68376 6.71698 6.73752 6.95526 7.09027 7.09440 7.19520 7.25770 7.29946 7.59403 7.76361 7.96281 8.25088 8.48024 8.57895 8.74765 9.49038 9.99612 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.002472 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.928930 B =11323.787563 C =12128.418459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.088 3.912 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.246 1.246 7 C -0.442 4.442 8 H 0.092 0.908 9 C 0.138 3.862 10 C -0.316 4.316 11 C 0.148 3.852 12 N -0.623 5.623 13 C 0.404 3.596 14 N -0.743 5.743 15 C 0.139 3.861 16 C -0.121 4.121 17 C -0.096 4.096 18 H 0.093 0.907 19 C 0.063 3.937 20 N -0.693 5.693 21 C 0.128 3.872 22 C 0.029 3.971 23 C -0.194 4.194 24 C -0.205 4.205 25 C -0.017 4.017 26 N -0.440 5.440 27 C 0.110 3.890 28 C -0.324 4.324 29 H 0.287 0.713 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.391 0.609 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.024 0.976 39 H 0.355 0.645 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.158 0.842 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.769 -12.767 9.541 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.133 4.133 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.170 1.170 7 C -0.472 4.472 8 H 0.110 0.890 9 C 0.130 3.870 10 C -0.341 4.341 11 C -0.004 4.004 12 N -0.346 5.346 13 C 0.175 3.825 14 N -0.379 5.379 15 C 0.014 3.986 16 C -0.160 4.160 17 C -0.116 4.116 18 H 0.111 0.889 19 C -0.066 4.066 20 N -0.326 5.326 21 C -0.001 4.001 22 C -0.084 4.084 23 C -0.220 4.220 24 C -0.230 4.230 25 C -0.147 4.147 26 N -0.115 5.115 27 C -0.012 4.012 28 C -0.351 4.351 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.224 0.776 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.176 0.824 40 H 0.113 0.887 41 H 0.061 0.939 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.175 0.825 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.222 -12.916 8.822 21.140 hybrid contribution 0.008 1.258 0.552 1.374 sum 14.230 -11.659 9.374 20.646 Atomic orbital electron populations 1.69662 1.08215 1.30495 1.34142 1.26186 0.94676 1.01949 0.90465 0.86235 0.81124 0.79374 0.78926 1.19419 1.21889 1.16957 1.19479 0.92928 0.96174 1.38590 0.89032 1.17690 0.92655 0.89171 0.87526 1.21510 0.97265 1.07359 1.07990 1.21305 0.90124 0.93645 0.95295 1.66822 1.39308 1.09713 1.18774 1.18002 0.87416 0.87408 0.89685 1.44115 1.11044 1.33357 1.49390 1.21164 0.95764 0.89398 0.92282 1.21728 0.98788 0.96865 0.98629 1.21213 0.98438 0.95898 0.96048 0.88903 1.21164 0.97102 0.95710 0.92647 1.58826 1.31481 1.21512 1.20746 1.20825 0.95880 0.89386 0.94024 1.20324 1.02535 0.96275 0.89235 1.20499 1.07723 0.92754 1.00982 1.20941 1.06180 0.99414 0.96446 1.21721 1.07931 0.84186 1.00827 1.44225 1.42458 1.08310 1.16541 1.22441 0.95224 0.83643 0.99850 1.21122 0.92285 1.09653 1.12002 0.90273 0.87750 0.85846 0.77575 0.92399 0.92328 0.91049 0.90685 0.89745 0.95751 0.82438 0.88714 0.93855 0.85053 0.85033 0.82451 0.88633 0.89985 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.09 13.92 55.55 0.77 -20.32 16 2 C 0.09 2.29 5.42 -17.35 -0.09 2.19 16 3 Si 0.92 20.77 24.54 -169.99 -4.17 16.60 16 4 H -0.27 -5.86 6.70 56.52 0.38 -5.48 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.25 -5.80 6.85 56.52 0.39 -5.41 16 7 C -0.44 -11.95 9.63 -37.65 -0.36 -12.32 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.14 3.56 5.13 -106.56 -0.55 3.01 16 10 C -0.32 -7.73 7.24 -39.07 -0.28 -8.02 16 11 C 0.15 3.37 11.10 -18.05 -0.20 3.17 16 12 N -0.62 -14.23 10.37 -12.82 -0.13 -14.36 16 13 C 0.40 8.85 7.65 -154.97 -1.19 7.67 16 14 N -0.74 -12.50 5.73 -60.48 -0.35 -12.85 16 15 C 0.14 1.89 4.65 -4.05 -0.02 1.87 16 16 C -0.12 -1.13 4.73 -26.74 -0.13 -1.25 16 17 C -0.10 -0.89 2.16 -91.30 -0.20 -1.09 16 18 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 19 C 0.06 0.59 5.07 -6.01 -0.03 0.56 16 20 N -0.69 -6.59 6.52 -116.69 -0.76 -7.35 16 21 C 0.13 1.12 6.53 -4.05 -0.03 1.09 16 22 C 0.03 0.32 6.22 -81.53 -0.51 -0.19 16 23 C -0.19 -2.20 10.81 -39.86 -0.43 -2.63 16 24 C -0.20 -2.25 10.88 -39.58 -0.43 -2.68 16 25 C -0.02 -0.17 11.51 -16.87 -0.19 -0.37 16 26 N -0.44 -4.58 2.78 -110.95 -0.31 -4.88 16 27 C 0.11 0.90 5.88 -2.94 -0.02 0.88 16 28 C -0.32 -7.69 9.12 -38.44 -0.35 -8.04 16 29 H 0.29 6.80 8.29 -40.82 -0.34 6.46 16 30 H 0.10 2.50 4.76 -52.49 -0.25 2.25 16 31 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 32 H 0.39 5.90 8.60 -40.82 -0.35 5.55 16 33 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 34 H 0.06 0.83 6.03 -51.93 -0.31 0.52 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.65 8.01 -51.93 -0.42 0.23 16 37 H 0.08 0.87 5.83 -51.93 -0.30 0.57 16 38 H 0.02 0.21 7.55 -51.93 -0.39 -0.18 16 39 H 0.36 2.80 8.89 -39.29 -0.35 2.45 16 40 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 41 H 0.04 0.35 7.76 -51.93 -0.40 -0.05 16 42 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 44 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 45 H 0.10 0.63 7.89 -51.93 -0.41 0.22 16 46 H 0.08 0.60 7.88 -51.93 -0.41 0.19 16 47 H 0.10 2.34 6.71 -52.49 -0.35 1.99 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -30.90 369.05 -11.30 -42.20 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -6.91 Total: 11.54 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -5.00 Total: -16.14 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.77 Total: -59.76 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.17 Total: 16.60 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.90 -11.30 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155458053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.864 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds