Wall clock time and date at job start Tue Mar 31 2020 14:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86805 * 119.99708 * 2 1 4 4 H 1.48493 * 109.47207 * 275.39385 * 3 2 1 5 5 H 1.48501 * 109.46839 * 35.39385 * 3 2 1 6 6 H 1.48500 * 109.46961 * 155.38945 * 3 2 1 7 7 C 1.40020 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00066 * 341.61972 * 7 2 1 9 9 C 1.41551 * 120.00436 * 161.62063 * 7 2 1 10 10 C 1.41187 * 120.99056 * 330.84287 * 9 7 2 11 11 C 1.36553 * 119.14753 * 180.02562 * 10 9 7 12 12 N 1.32097 * 121.26756 * 359.72191 * 11 10 9 13 13 C 1.32537 * 122.21607 * 0.56746 * 12 11 10 14 14 N 1.39081 * 119.65880 * 179.70942 * 13 12 11 15 15 C 1.46495 * 120.00189 * 179.73179 * 14 13 12 16 16 C 1.52998 * 109.47368 * 179.97438 * 15 14 13 17 17 C 1.52992 * 109.47109 * 180.02562 * 16 15 14 18 18 H 1.08999 * 109.17590 * 54.28460 * 17 16 15 19 19 C 1.50927 * 109.17781 * 294.99735 * 17 16 15 20 20 N 1.44759 * 116.64334 * 167.10325 * 19 17 16 21 21 C 1.47457 * 112.78502 * 73.85806 * 20 19 17 22 22 C 1.51951 * 107.03049 * 279.69890 * 21 20 19 23 23 C 1.34303 * 127.06396 * 244.43935 * 22 21 20 24 24 C 1.41159 * 107.11843 * 179.97438 * 23 22 21 25 25 C 1.35115 * 107.44646 * 0.38350 * 24 23 22 26 26 N 1.35874 * 107.96002 * 359.71089 * 25 24 23 27 27 C 1.47831 * 126.97081 * 180.16039 * 26 25 24 28 28 C 1.38741 * 120.67988 * 359.43759 * 13 12 11 29 29 H 0.96996 * 120.00173 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.42635 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.37026 * 179.97438 * 11 10 9 32 32 H 0.97004 * 119.99818 * 359.73191 * 14 13 12 33 33 H 1.09000 * 109.47090 * 59.99941 * 15 14 13 34 34 H 1.08998 * 109.47187 * 300.00277 * 15 14 13 35 35 H 1.09000 * 109.47037 * 59.99941 * 16 15 14 36 36 H 1.09000 * 109.46707 * 300.00230 * 16 15 14 37 37 H 1.08999 * 108.01056 * 45.29886 * 19 17 16 38 38 H 1.08998 * 108.01320 * 288.91394 * 19 17 16 39 39 H 1.00897 * 110.99934 * 199.13846 * 20 19 17 40 40 H 1.09010 * 109.94175 * 160.32124 * 21 20 19 41 41 H 1.09000 * 109.94712 * 39.08570 * 21 20 19 42 42 H 1.07991 * 126.43991 * 0.06365 * 23 22 21 43 43 H 1.08003 * 126.27209 * 180.13102 * 24 23 22 44 44 H 1.08003 * 126.01834 * 179.72981 * 25 24 23 45 45 H 1.08997 * 109.94717 * 356.37525 * 27 26 25 46 46 H 1.08999 * 110.01761 * 235.15712 * 27 26 25 47 47 H 1.08001 * 120.65921 * 180.25122 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3749 2.1123 -1.3938 5 1 1.5004 2.6171 0.8109 6 1 3.5913 1.4101 0.5831 7 6 2.0076 -1.2126 -0.0005 8 1 1.5091 -2.1242 0.2940 9 6 3.3690 -1.2437 -0.3871 10 6 3.8838 -0.3088 -1.3114 11 6 5.2030 -0.3736 -1.6581 12 7 6.0035 -1.2887 -1.1416 13 6 5.5745 -2.1944 -0.2743 14 7 6.4626 -3.1377 0.2316 15 6 5.9978 -4.1386 1.1951 16 6 7.1637 -5.0480 1.5882 17 6 6.6781 -6.0937 2.5940 18 1 5.8205 -6.6211 2.1762 19 6 6.2611 -5.4001 3.8679 20 7 5.5103 -6.1897 4.8211 21 6 6.3474 -7.1727 5.5334 22 6 6.5235 -8.3628 4.6053 23 6 6.0811 -9.6155 4.8024 24 6 6.4753 -10.3767 3.6809 25 6 7.1510 -9.5532 2.8496 26 7 7.1797 -8.3182 3.4153 27 6 7.8084 -7.1006 2.8607 28 6 4.2500 -2.2079 0.1383 29 1 -0.4850 0.8400 0.0004 30 1 3.2423 0.4473 -1.7393 31 1 5.6005 0.3394 -2.3652 32 1 7.3898 -3.1328 -0.0535 33 1 5.2066 -4.7373 0.7439 34 1 5.6125 -3.6369 2.0828 35 1 7.9552 -4.4496 2.0393 36 1 7.5485 -5.5496 0.7003 37 1 5.6572 -4.5338 3.5979 38 1 7.1612 -5.0380 4.3647 39 1 5.0157 -5.5974 5.4712 40 1 5.8513 -7.4875 6.4516 41 1 7.3185 -6.7353 5.7656 42 1 5.5267 -9.9728 5.6575 43 1 6.2770 -11.4260 3.5191 44 1 7.5905 -9.8282 1.9022 45 1 8.3223 -7.3387 1.9294 46 1 8.5148 -6.6850 3.5793 47 1 3.9017 -2.9436 0.8481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155458053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:11 Heat of formation + Delta-G solvation = 64.921166 kcal Electronic energy + Delta-G solvation = -26764.790737 eV Core-core repulsion = 23139.782961 eV Total energy + Delta-G solvation = -3625.007776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.32090 -40.56899 -38.90824 -36.96992 -35.86471 -35.12816 -33.24620 -32.67825 -30.86165 -30.18164 -28.12623 -27.84286 -27.00005 -24.96605 -24.18222 -22.95829 -22.68384 -21.42769 -21.17936 -19.79148 -19.58927 -18.21349 -17.80100 -17.42418 -17.18719 -16.62639 -16.48571 -16.10033 -15.71934 -15.65500 -15.35282 -15.12434 -14.96170 -14.64885 -14.42357 -14.35684 -13.93328 -13.80559 -13.41610 -13.20407 -13.08163 -13.00031 -12.84102 -12.74212 -12.67813 -12.45502 -12.41160 -12.26818 -11.83110 -11.67524 -11.65036 -11.24761 -10.69686 -10.11210 -9.94834 -9.49465 -9.41261 -8.97265 -8.87922 -8.39685 -6.70569 0.76075 0.94460 1.27809 1.40494 1.42396 1.50162 2.05401 2.12020 2.14905 2.45105 2.66984 3.19878 3.49598 3.59124 3.71566 3.86643 3.98563 4.11084 4.13443 4.20178 4.26542 4.31651 4.36484 4.41411 4.53377 4.57286 4.60681 4.62685 4.74553 4.80205 4.81964 4.84081 4.87309 4.90216 4.95377 5.15809 5.23676 5.27092 5.40144 5.43866 5.48663 5.74516 5.90584 6.04068 6.17966 6.22508 6.33659 6.41020 6.42898 6.57714 6.63662 6.75599 6.94709 7.70601 8.10423 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.002472 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.928930 B =11323.787563 C =12128.418459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.054 3.946 3 Si 0.973 3.027 4 H -0.251 1.251 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.478 4.478 8 H 0.057 0.943 9 C 0.123 3.877 10 C -0.335 4.335 11 C 0.152 3.848 12 N -0.623 5.623 13 C 0.407 3.593 14 N -0.727 5.727 15 C 0.137 3.863 16 C -0.104 4.104 17 C -0.086 4.086 18 H 0.064 0.936 19 C 0.062 3.938 20 N -0.708 5.708 21 C 0.131 3.869 22 C 0.014 3.986 23 C -0.218 4.218 24 C -0.227 4.227 25 C -0.024 4.024 26 N -0.444 5.444 27 C 0.110 3.890 28 C -0.342 4.342 29 H 0.298 0.702 30 H 0.108 0.892 31 H 0.163 0.837 32 H 0.404 0.596 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.039 0.961 39 H 0.362 0.638 40 H 0.107 0.893 41 H 0.055 0.945 42 H 0.137 0.863 43 H 0.141 0.859 44 H 0.181 0.819 45 H 0.116 0.884 46 H 0.097 0.903 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.836 -12.044 9.291 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.163 4.163 3 Si 0.795 3.205 4 H -0.176 1.176 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.508 4.508 8 H 0.075 0.925 9 C 0.115 3.885 10 C -0.359 4.359 11 C 0.000 4.000 12 N -0.346 5.346 13 C 0.175 3.825 14 N -0.362 5.362 15 C 0.012 3.988 16 C -0.143 4.143 17 C -0.107 4.107 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.342 5.342 21 C 0.002 3.998 22 C -0.099 4.099 23 C -0.243 4.243 24 C -0.252 4.252 25 C -0.154 4.154 26 N -0.120 5.120 27 C -0.010 4.010 28 C -0.369 4.369 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.180 0.820 32 H 0.240 0.760 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.183 0.817 40 H 0.125 0.875 41 H 0.073 0.927 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.198 0.802 45 H 0.135 0.865 46 H 0.116 0.884 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.302 -12.226 8.586 22.860 hybrid contribution -0.864 0.870 0.640 1.383 sum 16.439 -11.357 9.225 22.007 Atomic orbital electron populations 1.69675 1.09264 1.31938 1.35349 1.26865 0.95310 1.04379 0.89762 0.85394 0.79141 0.76039 0.79880 1.17563 1.20167 1.18421 1.19457 0.94158 0.95805 1.41405 0.92495 1.17888 0.92362 0.90309 0.87931 1.21610 0.98353 1.07606 1.08378 1.21894 0.89435 0.93714 0.94983 1.67022 1.39155 1.09772 1.18680 1.18230 0.87550 0.87730 0.88946 1.44198 1.10971 1.32228 1.48785 1.21314 0.97374 0.89056 0.91052 1.21600 0.97187 0.96155 0.99340 1.21079 0.98012 0.95860 0.95716 0.91743 1.21163 0.97426 0.95263 0.92900 1.58792 1.32079 1.21993 1.21324 1.20881 0.96477 0.88496 0.93899 1.20715 1.02462 0.96832 0.89864 1.20785 1.08464 0.93465 1.01629 1.21232 1.06869 1.00237 0.96844 1.22153 1.07550 0.84196 1.01488 1.44422 1.42308 1.08878 1.16375 1.22580 0.94689 0.82503 1.01264 1.21231 0.93311 1.09710 1.12661 0.89151 0.87424 0.81991 0.76022 0.94131 0.92928 0.89001 0.89166 0.91200 0.94251 0.81654 0.87474 0.92712 0.84515 0.84167 0.80216 0.86544 0.88444 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.23 13.92 21.84 0.30 -44.93 16 2 C 0.05 2.87 5.42 85.29 0.46 3.33 16 3 Si 0.97 42.50 24.54 68.60 1.68 44.19 16 4 H -0.25 -10.18 6.70 99.48 0.67 -9.51 16 5 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 6 H -0.26 -11.87 6.85 99.48 0.68 -11.19 16 7 C -0.48 -27.08 9.63 23.52 0.23 -26.85 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 9 C 0.12 6.47 5.13 -21.12 -0.11 6.36 16 10 C -0.33 -16.05 7.24 22.60 0.16 -15.88 16 11 C 0.15 6.53 11.10 84.26 0.94 7.47 16 12 N -0.62 -26.91 10.37 -194.47 -2.02 -28.92 16 13 C 0.41 17.29 7.65 132.90 1.02 18.31 16 14 N -0.73 -22.90 5.73 -345.26 -1.98 -24.88 16 15 C 0.14 3.54 4.65 86.38 0.40 3.94 16 16 C -0.10 -1.65 4.73 30.59 0.14 -1.50 16 17 C -0.09 -1.45 2.16 -11.23 -0.02 -1.47 16 18 H 0.06 1.49 8.09 -2.39 -0.02 1.47 16 19 C 0.06 1.08 5.07 86.03 0.44 1.52 16 20 N -0.71 -12.92 6.52 -523.11 -3.41 -16.33 16 21 C 0.13 2.12 6.53 85.85 0.56 2.68 16 22 C 0.01 0.30 6.22 41.42 0.26 0.56 16 23 C -0.22 -4.89 10.81 22.09 0.24 -4.66 16 24 C -0.23 -4.90 10.88 22.27 0.24 -4.65 16 25 C -0.02 -0.46 11.51 83.35 0.96 0.50 16 26 N -0.44 -8.53 2.78 -504.95 -1.40 -9.93 16 27 C 0.11 1.49 5.88 86.36 0.51 2.00 16 28 C -0.34 -16.46 9.12 23.01 0.21 -16.25 16 29 H 0.30 14.30 8.29 -92.71 -0.77 13.53 16 30 H 0.11 5.02 4.76 -2.91 -0.01 5.00 16 31 H 0.16 5.61 8.06 -2.91 -0.02 5.58 16 32 H 0.40 10.85 8.60 -92.70 -0.80 10.05 16 33 H 0.04 1.21 7.93 -2.39 -0.02 1.19 16 34 H 0.05 1.47 6.03 -2.39 -0.01 1.45 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.22 8.01 -2.39 -0.02 1.20 16 37 H 0.07 1.41 5.83 -2.39 -0.01 1.40 16 38 H 0.04 0.57 7.55 -2.39 -0.02 0.56 16 39 H 0.36 5.54 8.89 -89.70 -0.80 4.74 16 40 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.05 0.76 7.76 -2.39 -0.02 0.74 16 42 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 43 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 45 H 0.12 1.10 7.89 -2.39 -0.02 1.08 16 46 H 0.10 1.07 7.88 -2.39 -0.02 1.05 16 47 H 0.10 4.82 6.71 -2.91 -0.02 4.80 16 Total: -1.00 -68.21 369.05 -0.84 -69.05 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: -0.66 Total: 36.35 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 6.63 Total: -24.59 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -8.50 Total: -124.99 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.68 Total: 44.19 kcal Total: -68.21 -0.84 -69.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155458053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.975 kcal (2) G-P(sol) polarization free energy of solvation -68.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds