Wall clock time and date at job start Tue Mar 31 2020 14:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86804 * 120.00171 * 2 1 4 4 H 1.48496 * 109.47018 * 270.00107 * 3 2 1 5 5 H 1.48500 * 109.46961 * 30.00295 * 3 2 1 6 6 H 1.48499 * 109.46877 * 150.00023 * 3 2 1 7 7 C 1.40054 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99627 * 174.91637 * 7 2 1 9 9 C 1.41279 * 120.00251 * 355.18991 * 7 2 1 10 10 C 1.40741 * 120.16380 * 185.09720 * 9 7 2 11 11 N 1.31889 * 119.91331 * 179.70388 * 10 9 7 12 12 C 1.32176 * 120.27022 * 0.56932 * 11 10 9 13 13 C 1.39842 * 120.32531 * 359.70421 * 12 11 10 14 14 N 1.39130 * 119.96108 * 179.97438 * 13 12 11 15 15 C 1.37257 * 119.99749 * 185.69773 * 14 13 12 16 16 N 1.29299 * 120.00530 * 354.85923 * 15 14 13 17 17 C 1.50701 * 119.99656 * 174.85657 * 15 14 13 18 18 C 1.53001 * 109.47271 * 60.00180 * 17 15 14 19 19 C 1.52995 * 109.47195 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.47488 * 59.99760 * 19 18 17 21 21 C 1.52994 * 109.46879 * 300.00365 * 20 19 18 22 22 C 1.53004 * 109.47009 * 299.99502 * 21 20 19 23 23 C 1.52994 * 109.47332 * 60.00403 * 22 21 20 24 24 C 1.52999 * 109.46963 * 300.00214 * 23 22 21 25 25 C 1.53004 * 109.47024 * 180.02562 * 17 15 14 26 26 C 1.52994 * 109.47694 * 59.99724 * 21 20 19 27 27 N 1.32239 * 120.07393 * 359.97438 * 13 12 11 28 28 H 0.97003 * 119.99767 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.03918 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.84339 * 179.67912 * 12 11 10 31 31 H 0.97003 * 119.99677 * 5.69433 * 14 13 12 32 32 H 0.96996 * 120.00342 * 180.02562 * 16 15 14 33 33 H 1.09000 * 109.46855 * 300.00020 * 18 17 15 34 34 H 1.09004 * 109.46889 * 59.99486 * 18 17 15 35 35 H 1.09004 * 109.47226 * 180.02562 * 19 18 17 36 36 H 1.08994 * 109.47355 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.46819 * 59.99772 * 20 19 18 38 38 H 1.08999 * 109.47096 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.47376 * 299.99926 * 22 21 20 40 40 H 1.09002 * 109.47232 * 180.02562 * 22 21 20 41 41 H 1.08993 * 109.47355 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47416 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.46980 * 299.99485 * 24 23 22 44 44 H 1.09000 * 109.47138 * 299.99713 * 25 17 15 45 45 H 1.08994 * 109.47310 * 59.99988 * 25 17 15 46 46 H 1.08994 * 109.47345 * 180.02562 * 26 21 20 47 47 H 1.09000 * 109.47247 * 59.99832 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0464 -1.4000 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4401 0.7000 7 6 2.0075 -1.2129 -0.0005 8 1 3.0844 -1.2147 -0.0834 9 6 1.3048 -2.4343 0.1015 10 6 2.0088 -3.6483 0.2092 11 7 1.3478 -4.7851 0.3101 12 6 0.0261 -4.7906 0.2992 13 6 -0.6841 -3.5912 0.1869 14 7 -2.0752 -3.6058 0.1757 15 6 -2.7719 -2.4452 -0.0516 16 7 -2.1403 -1.3219 -0.1563 17 6 -4.2731 -2.4803 -0.1792 18 6 -4.8820 -3.0300 1.1123 19 6 -6.4061 -3.0650 0.9830 20 6 -6.7980 -3.9663 -0.1896 21 6 -6.1891 -3.4165 -1.4810 22 6 -6.7125 -2.0004 -1.7291 23 6 -6.3207 -1.0991 -0.5566 24 6 -6.9295 -1.6489 0.7349 25 6 -4.7970 -1.0645 -0.4283 26 6 -4.6650 -3.3816 -1.3518 27 7 -0.0348 -2.4431 0.0913 28 1 -0.4850 0.8401 0.0004 29 1 3.0887 -3.6485 0.2137 30 1 -0.5082 -5.7260 0.3770 31 1 -2.5528 -4.4362 0.3284 32 1 -2.6326 -0.5017 -0.3165 33 1 -4.5088 -4.0387 1.2893 34 1 -4.6032 -2.3876 1.9477 35 1 -6.8400 -3.4562 1.9033 36 1 -7.8838 -3.9915 -0.2814 37 1 -6.4251 -4.9751 -0.0128 38 1 -6.4686 -4.0583 -2.3165 39 1 -7.7984 -2.0253 -1.8213 40 1 -6.2790 -1.6088 -2.6494 41 1 -6.6932 -0.0902 -0.7335 42 1 -6.6508 -1.0065 1.5702 43 1 -8.0154 -1.6737 0.6428 44 1 -4.5182 -0.4218 0.4068 45 1 -4.3632 -0.6732 -1.3484 46 1 -4.2313 -2.9895 -2.2716 47 1 -4.2921 -4.3904 -1.1750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155962516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:20 Heat of formation + Delta-G solvation = 71.162621 kcal Electronic energy + Delta-G solvation = -29061.331186 eV Core-core repulsion = 25436.594060 eV Total energy + Delta-G solvation = -3624.737126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.62528 -38.87267 -36.72992 -33.88543 -33.28577 -32.68319 -32.67687 -31.15256 -30.62734 -28.89864 -26.02543 -25.95878 -25.59921 -23.27003 -22.02169 -21.49305 -21.42984 -21.11303 -19.06653 -17.94415 -17.45880 -16.24296 -15.76601 -14.94265 -14.74843 -14.62111 -14.51155 -14.47626 -14.36149 -14.01328 -13.81013 -13.38250 -13.32133 -13.07468 -13.07044 -12.73777 -12.49781 -12.43898 -11.57316 -11.34279 -11.26060 -11.20660 -10.96466 -10.95230 -10.90355 -10.87217 -10.77948 -10.57999 -10.29089 -10.10459 -9.73238 -9.70566 -9.58816 -9.17168 -8.91413 -8.07961 -7.96716 -6.74905 -6.69784 -6.12511 -4.45450 2.74324 3.10969 3.13476 3.16918 3.40977 3.76784 3.94467 4.01273 4.41785 4.46029 4.47910 4.90516 5.00234 5.07566 5.12625 5.15487 5.18804 5.21610 5.29878 5.30040 5.31422 5.59008 5.61241 5.68217 5.69980 5.91264 5.91347 5.92174 5.99542 6.00612 6.05188 6.06717 6.10930 6.14479 6.15201 6.31087 6.37555 6.39484 6.43485 6.48174 6.50218 6.70474 6.98632 7.24201 7.30926 7.76804 8.01940 8.14797 8.45555 8.73088 8.96455 9.48742 9.62852 10.19761 10.38631 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.004219 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.808821 B = 6635.148196 C = 7941.815593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.410 4.410 8 H 0.085 0.915 9 C 0.225 3.775 10 C -0.108 4.108 11 N -0.411 5.411 12 C -0.167 4.167 13 C 0.346 3.654 14 N -0.639 5.639 15 C 0.356 3.644 16 N -0.606 5.606 17 C -0.054 4.054 18 C -0.096 4.096 19 C -0.085 4.085 20 C -0.107 4.107 21 C -0.085 4.085 22 C -0.108 4.108 23 C -0.082 4.082 24 C -0.107 4.107 25 C -0.103 4.103 26 C -0.096 4.096 27 N -0.427 5.427 28 H 0.266 0.734 29 H 0.126 0.874 30 H 0.116 0.884 31 H 0.404 0.596 32 H 0.320 0.680 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.515 -1.026 -0.900 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.258 5.258 2 C -0.173 4.173 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.442 4.442 8 H 0.103 0.897 9 C 0.098 3.902 10 C -0.279 4.279 11 N -0.122 5.122 12 C -0.329 4.329 13 C 0.102 3.898 14 N -0.271 5.271 15 C 0.068 3.932 16 N -0.227 5.227 17 C -0.060 4.060 18 C -0.135 4.135 19 C -0.104 4.104 20 C -0.144 4.144 21 C -0.104 4.104 22 C -0.145 4.145 23 C -0.100 4.100 24 C -0.145 4.145 25 C -0.142 4.142 26 C -0.134 4.134 27 N -0.151 5.151 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.134 0.866 31 H 0.239 0.761 32 H 0.137 0.863 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.664 -0.464 -0.871 16.693 hybrid contribution -0.848 0.608 -0.049 1.044 sum -17.511 0.144 -0.921 17.536 Atomic orbital electron populations 1.70512 1.05595 1.26505 1.23211 1.26207 0.95231 1.00521 0.95317 0.86529 0.80758 0.81777 0.79002 1.19697 1.20387 1.18669 1.19541 0.94460 0.89300 1.40858 0.89708 1.19344 0.88517 0.93066 0.89307 1.22932 0.98830 0.89534 1.16589 1.67505 1.07857 1.30346 1.06537 1.21774 0.90910 0.95285 1.24917 1.19573 0.84256 0.92338 0.93664 1.41410 1.03189 1.08033 1.74502 1.21382 0.86422 0.89121 0.96233 1.70147 1.37986 0.97806 1.16763 1.20491 0.93317 0.96239 0.95911 1.21505 0.94252 1.01056 0.96674 1.21057 0.95791 0.95506 0.98005 1.21536 0.99809 0.98603 0.94488 1.21058 0.95434 0.96420 0.97467 1.21541 1.00059 0.95047 0.97857 1.20995 0.95181 0.98701 0.95129 1.21538 0.99435 0.96144 0.97362 1.21575 0.95077 0.95477 1.02024 1.21493 0.94734 0.99376 0.97804 1.69674 1.06386 1.20698 1.18300 0.92211 0.85616 0.86643 0.76077 0.86280 0.91853 0.91764 0.91376 0.92281 0.91952 0.91373 0.92243 0.92047 0.91300 0.92049 0.92236 0.91520 0.91519 0.91803 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 -16.27 9.05 55.55 0.50 -15.77 16 2 C 0.06 1.42 5.49 -17.34 -0.10 1.33 16 3 Si 0.89 18.40 29.56 -169.99 -5.03 13.37 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 7 C -0.41 -10.92 9.15 -37.75 -0.35 -11.26 16 8 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 9 C 0.22 6.25 6.54 -84.83 -0.55 5.70 16 10 C -0.11 -2.87 10.97 -16.58 -0.18 -3.06 16 11 N -0.41 -10.67 10.47 -12.13 -0.13 -10.80 16 12 C -0.17 -4.03 11.09 -16.80 -0.19 -4.21 16 13 C 0.35 8.40 7.44 -154.77 -1.15 7.25 16 14 N -0.64 -12.25 5.26 -9.28 -0.05 -12.30 16 15 C 0.36 6.50 6.44 -154.34 -0.99 5.51 16 16 N -0.61 -12.96 8.81 32.94 0.29 -12.67 16 17 C -0.05 -0.71 0.64 -155.66 -0.10 -0.81 16 18 C -0.10 -1.14 4.37 -26.73 -0.12 -1.26 16 19 C -0.09 -0.82 3.19 -90.62 -0.29 -1.11 16 20 C -0.11 -0.96 5.19 -26.73 -0.14 -1.10 16 21 C -0.09 -0.83 3.19 -90.62 -0.29 -1.12 16 22 C -0.11 -1.02 5.19 -26.73 -0.14 -1.16 16 23 C -0.08 -0.82 3.19 -90.65 -0.29 -1.11 16 24 C -0.11 -1.01 5.19 -26.73 -0.14 -1.15 16 25 C -0.10 -1.29 3.22 -26.75 -0.09 -1.38 16 26 C -0.10 -1.15 4.39 -26.73 -0.12 -1.27 16 27 N -0.43 -11.62 5.79 -10.09 -0.06 -11.68 16 28 H 0.27 6.21 8.29 -40.82 -0.34 5.88 16 29 H 0.13 3.07 8.06 -52.49 -0.42 2.65 16 30 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 31 H 0.40 6.32 7.69 -40.82 -0.31 6.01 16 32 H 0.32 6.25 6.30 -40.82 -0.26 5.99 16 33 H 0.06 0.73 7.49 -51.93 -0.39 0.34 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.89 7.67 -51.93 -0.40 0.49 16 45 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.76 7.73 -51.93 -0.40 0.36 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -30.51 351.54 -11.58 -42.09 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -7.20 Total: 12.71 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -5.21 Total: -10.24 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: 0.56 Total: -63.23 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.51 -11.58 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155962516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.252 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds