Wall clock time and date at job start Tue Mar 31 2020 14:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86804 * 120.00171 * 2 1 4 4 H 1.48496 * 109.47018 * 270.00107 * 3 2 1 5 5 H 1.48500 * 109.46961 * 30.00295 * 3 2 1 6 6 H 1.48499 * 109.46877 * 150.00023 * 3 2 1 7 7 C 1.40054 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99627 * 174.91637 * 7 2 1 9 9 C 1.41279 * 120.00251 * 355.18991 * 7 2 1 10 10 C 1.40741 * 120.16380 * 185.09720 * 9 7 2 11 11 N 1.31889 * 119.91331 * 179.70388 * 10 9 7 12 12 C 1.32176 * 120.27022 * 0.56932 * 11 10 9 13 13 C 1.39842 * 120.32531 * 359.70421 * 12 11 10 14 14 N 1.39130 * 119.96108 * 179.97438 * 13 12 11 15 15 C 1.37257 * 119.99749 * 185.69773 * 14 13 12 16 16 N 1.29299 * 120.00530 * 354.85923 * 15 14 13 17 17 C 1.50701 * 119.99656 * 174.85657 * 15 14 13 18 18 C 1.53001 * 109.47271 * 60.00180 * 17 15 14 19 19 C 1.52995 * 109.47195 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.47488 * 59.99760 * 19 18 17 21 21 C 1.52994 * 109.46879 * 300.00365 * 20 19 18 22 22 C 1.53004 * 109.47009 * 299.99502 * 21 20 19 23 23 C 1.52994 * 109.47332 * 60.00403 * 22 21 20 24 24 C 1.52999 * 109.46963 * 300.00214 * 23 22 21 25 25 C 1.53004 * 109.47024 * 180.02562 * 17 15 14 26 26 C 1.52994 * 109.47694 * 59.99724 * 21 20 19 27 27 N 1.32239 * 120.07393 * 359.97438 * 13 12 11 28 28 H 0.97003 * 119.99767 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.03918 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.84339 * 179.67912 * 12 11 10 31 31 H 0.97003 * 119.99677 * 5.69433 * 14 13 12 32 32 H 0.96996 * 120.00342 * 180.02562 * 16 15 14 33 33 H 1.09000 * 109.46855 * 300.00020 * 18 17 15 34 34 H 1.09004 * 109.46889 * 59.99486 * 18 17 15 35 35 H 1.09004 * 109.47226 * 180.02562 * 19 18 17 36 36 H 1.08994 * 109.47355 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.46819 * 59.99772 * 20 19 18 38 38 H 1.08999 * 109.47096 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.47376 * 299.99926 * 22 21 20 40 40 H 1.09002 * 109.47232 * 180.02562 * 22 21 20 41 41 H 1.08993 * 109.47355 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47416 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.46980 * 299.99485 * 24 23 22 44 44 H 1.09000 * 109.47138 * 299.99713 * 25 17 15 45 45 H 1.08994 * 109.47310 * 59.99988 * 25 17 15 46 46 H 1.08994 * 109.47345 * 180.02562 * 26 21 20 47 47 H 1.09000 * 109.47247 * 59.99832 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0464 -1.4000 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4401 0.7000 7 6 2.0075 -1.2129 -0.0005 8 1 3.0844 -1.2147 -0.0834 9 6 1.3048 -2.4343 0.1015 10 6 2.0088 -3.6483 0.2092 11 7 1.3478 -4.7851 0.3101 12 6 0.0261 -4.7906 0.2992 13 6 -0.6841 -3.5912 0.1869 14 7 -2.0752 -3.6058 0.1757 15 6 -2.7719 -2.4452 -0.0516 16 7 -2.1403 -1.3219 -0.1563 17 6 -4.2731 -2.4803 -0.1792 18 6 -4.8820 -3.0300 1.1123 19 6 -6.4061 -3.0650 0.9830 20 6 -6.7980 -3.9663 -0.1896 21 6 -6.1891 -3.4165 -1.4810 22 6 -6.7125 -2.0004 -1.7291 23 6 -6.3207 -1.0991 -0.5566 24 6 -6.9295 -1.6489 0.7349 25 6 -4.7970 -1.0645 -0.4283 26 6 -4.6650 -3.3816 -1.3518 27 7 -0.0348 -2.4431 0.0913 28 1 -0.4850 0.8401 0.0004 29 1 3.0887 -3.6485 0.2137 30 1 -0.5082 -5.7260 0.3770 31 1 -2.5528 -4.4362 0.3284 32 1 -2.6326 -0.5017 -0.3165 33 1 -4.5088 -4.0387 1.2893 34 1 -4.6032 -2.3876 1.9477 35 1 -6.8400 -3.4562 1.9033 36 1 -7.8838 -3.9915 -0.2814 37 1 -6.4251 -4.9751 -0.0128 38 1 -6.4686 -4.0583 -2.3165 39 1 -7.7984 -2.0253 -1.8213 40 1 -6.2790 -1.6088 -2.6494 41 1 -6.6932 -0.0902 -0.7335 42 1 -6.6508 -1.0065 1.5702 43 1 -8.0154 -1.6737 0.6428 44 1 -4.5182 -0.4218 0.4068 45 1 -4.3632 -0.6732 -1.3484 46 1 -4.2313 -2.9895 -2.2716 47 1 -4.2921 -4.3904 -1.1750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155962516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:19 Heat of formation + Delta-G solvation = 55.563393 kcal Electronic energy + Delta-G solvation = -29062.007619 eV Core-core repulsion = 25436.594060 eV Total energy + Delta-G solvation = -3625.413559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.57061 -40.74855 -38.23816 -35.77060 -34.75944 -33.63713 -33.49648 -33.04749 -31.92904 -30.75459 -27.74397 -26.81726 -26.74187 -24.87818 -23.80145 -22.75028 -22.30343 -22.21264 -20.59090 -19.57754 -18.63948 -17.90065 -17.30156 -16.87525 -16.35622 -16.06526 -15.72285 -15.45131 -15.33532 -15.26572 -15.19247 -14.71565 -14.48209 -14.23257 -14.22829 -13.88943 -13.34761 -13.30279 -13.22627 -13.13045 -13.11208 -12.87695 -12.48394 -12.01505 -11.86298 -11.80662 -11.80295 -11.72919 -11.70829 -11.49528 -11.24434 -10.93740 -10.82346 -10.54016 -10.47551 -9.94176 -9.64540 -8.51901 -8.49482 -8.01792 -6.46320 0.84568 1.33669 1.44030 1.53603 1.58368 2.24410 2.27318 2.40425 2.99927 3.48547 3.55075 3.61358 4.04956 4.11067 4.16460 4.21766 4.26091 4.28836 4.30200 4.31428 4.35662 4.44514 4.44748 4.53834 4.60286 4.74223 4.79477 4.80856 4.86414 4.87823 5.01909 5.07814 5.13033 5.13718 5.16141 5.19027 5.20416 5.26575 5.26951 5.29587 5.42748 5.51433 5.56993 5.62168 5.63452 5.88985 6.15497 6.38786 6.72824 6.81282 7.03820 7.52966 8.05313 8.30830 8.51468 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.004219 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.808821 B = 6635.148196 C = 7941.815593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.659 5.659 2 C 0.012 3.988 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.437 4.437 8 H 0.090 0.910 9 C 0.193 3.807 10 C -0.138 4.138 11 N -0.421 5.421 12 C -0.170 4.170 13 C 0.335 3.665 14 N -0.627 5.627 15 C 0.355 3.645 16 N -0.654 5.654 17 C -0.041 4.041 18 C -0.095 4.095 19 C -0.081 4.081 20 C -0.103 4.103 21 C -0.081 4.081 22 C -0.106 4.106 23 C -0.078 4.078 24 C -0.106 4.106 25 C -0.101 4.101 26 C -0.094 4.094 27 N -0.450 5.450 28 H 0.272 0.728 29 H 0.134 0.866 30 H 0.150 0.850 31 H 0.421 0.579 32 H 0.324 0.676 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.054 0.946 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.042 0.958 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.253 -1.197 -0.879 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.277 5.277 2 C -0.216 4.216 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.468 4.468 8 H 0.109 0.891 9 C 0.067 3.933 10 C -0.307 4.307 11 N -0.132 5.132 12 C -0.333 4.333 13 C 0.090 3.910 14 N -0.260 5.260 15 C 0.068 3.932 16 N -0.275 5.275 17 C -0.047 4.047 18 C -0.133 4.133 19 C -0.099 4.099 20 C -0.141 4.141 21 C -0.100 4.100 22 C -0.144 4.144 23 C -0.096 4.096 24 C -0.143 4.143 25 C -0.139 4.139 26 C -0.132 4.132 27 N -0.173 5.173 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.167 0.833 31 H 0.260 0.740 32 H 0.141 0.859 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.420 -0.662 -0.850 19.450 hybrid contribution -0.060 0.611 -0.061 0.617 sum -19.480 -0.050 -0.911 19.502 Atomic orbital electron populations 1.70649 1.06862 1.27772 1.22399 1.26991 0.96250 1.03549 0.94847 0.85312 0.79188 0.76839 0.79026 1.19235 1.19610 1.18389 1.19901 0.95014 0.90138 1.41756 0.89148 1.19771 0.89386 0.94023 0.90167 1.23037 0.99373 0.89664 1.18580 1.67509 1.08838 1.30169 1.06697 1.22332 0.90655 0.96666 1.23625 1.19965 0.86269 0.91959 0.92856 1.41415 1.01498 1.09389 1.73744 1.21939 0.88867 0.88122 0.94293 1.70048 1.39910 0.98979 1.18593 1.20385 0.89378 0.97337 0.97576 1.21500 0.96394 1.00624 0.94806 1.21060 0.93531 0.96080 0.99271 1.21540 1.00985 0.98452 0.93097 1.21058 0.93135 0.97032 0.98745 1.21552 1.01314 0.94498 0.97020 1.20997 0.92793 0.99662 0.96196 1.21548 1.00609 0.95729 0.96451 1.21540 0.97319 0.94551 1.00500 1.21483 0.96984 0.98797 0.95971 1.69729 1.06312 1.22076 1.19231 0.91684 0.84829 0.83250 0.74024 0.85867 0.91407 0.93562 0.89903 0.90228 0.91371 0.90044 0.90061 0.92835 0.90506 0.92693 0.90073 0.93032 0.93228 0.93873 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -34.44 9.05 21.84 0.20 -34.25 16 2 C 0.01 0.59 5.49 85.30 0.47 1.06 16 3 Si 0.98 38.35 29.56 68.60 2.03 40.38 16 4 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.44 -24.04 9.15 23.46 0.21 -23.82 16 8 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 9 C 0.19 11.16 6.54 40.18 0.26 11.42 16 10 C -0.14 -7.57 10.97 85.30 0.94 -6.63 16 11 N -0.42 -22.15 10.47 -192.28 -2.01 -24.16 16 12 C -0.17 -8.18 11.09 85.03 0.94 -7.23 16 13 C 0.34 16.55 7.44 133.24 0.99 17.55 16 14 N -0.63 -24.09 5.26 -183.26 -0.96 -25.05 16 15 C 0.35 13.18 6.44 137.75 0.89 14.07 16 16 N -0.65 -29.05 8.81 -49.70 -0.44 -29.49 16 17 C -0.04 -1.08 0.64 -52.92 -0.03 -1.12 16 18 C -0.09 -2.11 4.37 30.59 0.13 -1.98 16 19 C -0.08 -1.31 3.19 -10.79 -0.03 -1.35 16 20 C -0.10 -1.44 5.19 30.59 0.16 -1.28 16 21 C -0.08 -1.35 3.19 -10.80 -0.03 -1.38 16 22 C -0.11 -1.72 5.19 30.59 0.16 -1.57 16 23 C -0.08 -1.42 3.19 -10.81 -0.03 -1.45 16 24 C -0.11 -1.68 5.19 30.60 0.16 -1.53 16 25 C -0.10 -2.53 3.22 30.58 0.10 -2.43 16 26 C -0.09 -2.15 4.39 30.59 0.13 -2.01 16 27 N -0.45 -25.24 5.79 -185.84 -1.08 -26.31 16 28 H 0.27 13.02 8.29 -92.71 -0.77 12.25 16 29 H 0.13 6.81 8.06 -2.91 -0.02 6.79 16 30 H 0.15 5.99 8.06 -2.91 -0.02 5.97 16 31 H 0.42 12.77 7.69 -92.71 -0.71 12.05 16 32 H 0.32 13.35 6.30 -92.71 -0.58 12.76 16 33 H 0.07 1.44 7.49 -2.39 -0.02 1.42 16 34 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 1.42 7.67 -2.39 -0.02 1.41 16 45 H 0.05 1.39 7.68 -2.39 -0.02 1.37 16 46 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 1.48 7.73 -2.39 -0.02 1.46 16 Total: -1.00 -68.18 351.54 2.84 -65.34 By element: Atomic # 1 Polarization: 43.54 SS G_CDS: -0.30 Total: 43.24 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 5.41 Total: -9.69 kcal Atomic # 7 Polarization: -134.97 SS G_CDS: -4.29 Total: -139.26 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -68.18 2.84 -65.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155962516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.900 kcal (2) G-P(sol) polarization free energy of solvation -68.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds