Wall clock time and date at job start Tue Mar 31 2020 14:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.40451 * 120.53088 * 191.12890 * 3 2 1 5 5 N 1.38403 * 119.94685 * 0.16879 * 4 3 2 6 6 C 1.46499 * 120.00132 * 179.72565 * 5 4 3 7 7 H 1.09002 * 109.35112 * 324.81986 * 6 5 4 8 8 C 1.52958 * 109.41346 * 84.63971 * 6 5 4 9 9 C 1.53230 * 109.40140 * 183.70620 * 8 6 5 10 10 C 1.51275 * 108.53711 * 305.37328 * 9 8 6 11 11 C 1.37877 * 120.85195 * 231.32607 * 10 9 8 12 12 N 1.31513 * 120.00019 * 180.02562 * 11 10 9 13 13 Si 1.86802 * 119.99863 * 0.02562 * 11 10 9 14 14 H 1.48498 * 109.47121 * 59.99882 * 13 11 10 15 15 H 1.48496 * 109.47090 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47089 * 300.00226 * 13 11 10 17 17 C 1.51268 * 118.29903 * 51.35065 * 10 9 8 18 18 C 1.52955 * 109.41082 * 204.99878 * 6 5 4 19 19 N 1.32362 * 120.10959 * 179.88549 * 4 3 2 20 20 C 1.31683 * 121.70148 * 359.67801 * 19 4 3 21 21 C 1.38986 * 121.52871 * 359.94130 * 20 19 4 22 22 C 1.37343 * 119.17186 * 1.11756 * 21 20 19 23 23 C 1.50630 * 123.24222 * 177.94231 * 22 21 20 24 24 C 1.52909 * 110.90282 * 29.50620 * 23 22 21 25 25 C 1.52763 * 108.55083 * 270.44806 * 24 23 22 26 26 N 1.46460 * 110.22762 * 61.32320 * 25 24 23 27 27 C 1.47064 * 109.57857 * 33.31637 * 26 25 24 28 28 H 0.97004 * 120.00015 * 359.71409 * 5 4 3 29 29 H 1.09002 * 109.48188 * 63.73289 * 8 6 5 30 30 H 1.08993 * 109.49457 * 303.69301 * 8 6 5 31 31 H 1.09003 * 109.62537 * 185.66250 * 9 8 6 32 32 H 1.08996 * 109.78679 * 65.18089 * 9 8 6 33 33 H 0.97003 * 119.99860 * 179.97438 * 12 11 10 34 34 H 1.08999 * 109.62523 * 188.93910 * 17 10 9 35 35 H 1.08996 * 109.78786 * 68.46038 * 17 10 9 36 36 H 1.08988 * 109.48772 * 56.31452 * 18 6 5 37 37 H 1.09004 * 109.47866 * 296.26625 * 18 6 5 38 38 H 1.08000 * 119.23281 * 179.97438 * 20 19 4 39 39 H 1.08992 * 109.19079 * 149.87590 * 23 22 21 40 40 H 1.08998 * 109.18622 * 269.14420 * 23 22 21 41 41 H 1.09000 * 109.62244 * 30.16131 * 24 23 22 42 42 H 1.08998 * 109.62687 * 150.72154 * 24 23 22 43 43 H 1.08997 * 109.34459 * 181.56319 * 25 24 23 44 44 H 1.09000 * 109.34014 * 301.24635 * 25 24 23 45 45 H 1.00901 * 111.00011 * 270.35616 * 26 25 24 46 46 H 1.09003 * 109.16832 * 146.12766 * 27 26 25 47 47 H 1.08992 * 109.16816 * 26.91886 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2810 1.1880 0.2335 5 7 2.5985 2.3687 0.4694 6 6 3.3410 3.6067 0.7191 7 1 4.2477 3.3774 1.2788 8 6 3.7170 4.2520 -0.6157 9 6 4.5724 5.4966 -0.3564 10 6 3.8202 6.4090 0.5871 11 6 3.6332 7.7409 0.2837 12 7 2.9771 8.5191 1.1164 13 14 4.3118 8.4399 -1.3101 14 1 3.7094 7.7215 -2.4618 15 1 3.9782 9.8842 -1.3989 16 1 5.7867 8.2694 -1.3371 17 6 3.2790 5.8228 1.8723 18 6 2.4705 4.5663 1.5321 19 7 4.6046 1.1786 0.2339 20 6 5.2888 0.0730 0.0251 21 6 4.6542 -1.1419 -0.2053 22 6 3.2819 -1.1846 -0.2382 23 6 2.5015 -2.4408 -0.5247 24 6 3.2702 -3.6784 -0.0605 25 6 4.1542 -4.1608 -1.2092 26 7 5.1215 -3.1233 -1.5739 27 6 5.5106 -2.3683 -0.3733 28 1 1.6285 2.3765 0.4693 29 1 2.8106 4.5385 -1.1491 30 1 4.2831 3.5406 -1.2169 31 1 4.7584 6.0154 -1.2968 32 1 5.5208 5.2050 0.0947 33 1 2.8459 9.4563 0.9031 34 1 2.6341 6.5511 2.3638 35 1 4.1042 5.5592 2.5339 36 1 2.1534 4.0777 2.4533 37 1 1.5937 4.8454 0.9478 38 1 6.3681 0.1111 0.0337 39 1 1.5458 -2.3958 -0.0026 40 1 2.3201 -2.5131 -1.5971 41 1 3.8922 -3.4226 0.7974 42 1 2.5670 -4.4642 0.2152 43 1 4.6878 -5.0599 -0.9012 44 1 3.5304 -4.3894 -2.0733 45 1 4.7445 -2.5097 -2.2806 46 1 6.5542 -2.0665 -0.4628 47 1 5.3974 -3.0065 0.5030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:46 Heat of formation + Delta-G solvation = 55.227188 kcal Electronic energy + Delta-G solvation = -27613.896766 eV Core-core repulsion = 23988.468628 eV Total energy + Delta-G solvation = -3625.428138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14029 -38.70077 -37.22246 -36.72032 -34.49658 -33.70127 -32.19195 -31.66666 -30.18146 -29.64518 -27.24084 -26.38834 -25.32325 -24.29246 -22.36102 -21.57542 -21.00874 -20.65491 -19.59203 -18.54916 -17.51086 -17.25083 -16.39264 -16.02208 -15.44962 -15.20274 -14.73011 -14.50259 -14.37142 -14.15357 -13.85449 -13.47967 -13.41254 -13.23047 -13.13179 -12.97557 -12.81016 -12.45763 -12.38647 -12.13928 -12.04322 -11.82498 -11.70933 -11.35791 -11.24656 -11.06020 -10.88438 -10.70013 -10.27974 -10.26222 -10.02467 -9.69397 -9.59736 -9.50330 -9.03420 -8.81530 -8.69900 -8.51444 -7.61144 -6.14674 -4.05909 0.63106 1.24550 2.57054 2.93916 3.21090 3.27666 3.33695 3.34972 3.78386 3.80929 4.06580 4.22730 4.35272 4.36174 4.43829 4.60470 4.76138 4.86163 4.91237 5.00213 5.13824 5.17719 5.26361 5.39439 5.47328 5.56355 5.61623 5.65952 5.73707 5.79164 5.79629 6.00064 6.13631 6.30231 6.41440 6.52608 6.61323 6.64668 6.79027 6.81865 6.94110 7.00833 7.03580 7.26333 7.35383 7.40331 7.46363 7.60166 7.66349 7.77738 8.14883 8.32610 8.91323 9.50119 10.94996 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.002927 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.600774 B = 9563.368733 C =10224.108587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.266 3.734 3 C -0.181 4.181 4 C 0.462 3.538 5 N -0.698 5.698 6 C 0.159 3.841 7 H 0.087 0.913 8 C -0.112 4.112 9 C -0.006 4.006 10 C -0.492 4.492 11 C 0.077 3.923 12 N -0.890 5.890 13 Si 0.891 3.109 14 H -0.275 1.275 15 H -0.292 1.292 16 H -0.273 1.273 17 C 0.016 3.984 18 C -0.118 4.118 19 N -0.529 5.529 20 C 0.205 3.795 21 C -0.250 4.250 22 C 0.062 3.938 23 C -0.093 4.093 24 C -0.156 4.156 25 C 0.048 3.952 26 N -0.674 5.674 27 C 0.105 3.895 28 H 0.403 0.597 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.025 0.975 32 H 0.022 0.978 33 H 0.265 0.735 34 H 0.061 0.939 35 H 0.007 0.993 36 H 0.035 0.965 37 H 0.053 0.947 38 H 0.163 0.837 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.344 0.656 46 H 0.085 0.915 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.743 -23.454 -2.917 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.048 4.048 3 C -0.194 4.194 4 C 0.221 3.779 5 N -0.322 5.322 6 C 0.057 3.943 7 H 0.105 0.895 8 C -0.151 4.151 9 C -0.044 4.044 10 C -0.511 4.511 11 C -0.126 4.126 12 N -0.527 5.527 13 Si 0.720 3.280 14 H -0.200 1.200 15 H -0.219 1.219 16 H -0.199 1.199 17 C -0.022 4.022 18 C -0.156 4.156 19 N -0.245 5.245 20 C 0.040 3.960 21 C -0.257 4.257 22 C 0.052 3.948 23 C -0.130 4.130 24 C -0.195 4.195 25 C -0.082 4.082 26 N -0.302 5.302 27 C -0.024 4.024 28 H 0.239 0.761 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.180 0.820 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.161 0.839 46 H 0.103 0.897 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.954 -22.639 -2.670 22.987 hybrid contribution -1.101 0.393 -0.884 1.466 sum 1.853 -22.247 -3.554 22.605 Atomic orbital electron populations 1.81271 1.11693 1.07025 1.10810 1.25324 0.92267 0.94016 0.93203 1.16227 0.85095 0.94981 1.23079 1.18312 0.88384 0.85032 0.86212 1.45447 1.08714 1.06330 1.71730 1.21194 0.95138 0.80620 0.97343 0.89484 1.21910 1.00001 0.97908 0.95270 1.19572 0.95443 0.93207 0.96222 1.20033 1.34164 0.93096 1.03789 1.24840 0.94556 0.96435 0.96764 1.69818 1.40362 1.06151 1.36375 0.86648 0.79853 0.77495 0.84039 1.20048 1.21875 1.19881 1.19313 0.95145 0.91781 0.95982 1.21981 0.99025 0.97686 0.96940 1.67447 1.05315 1.30250 1.21473 1.22921 1.00056 0.85990 0.87035 1.20707 0.93117 0.98434 1.13453 1.19553 0.92631 0.92725 0.89908 1.20725 0.98529 0.91330 1.02462 1.22349 0.99729 0.96971 1.00445 1.22137 0.93156 0.95794 0.97099 1.61345 1.42179 1.16201 1.10474 1.20903 0.97699 0.90348 0.93461 0.76116 0.93311 0.94195 0.95683 0.95941 0.92471 0.92090 0.97434 0.94609 0.92833 0.81961 0.90452 0.89646 0.89987 0.90676 0.90698 0.91407 0.83893 0.89685 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.58 18.54 41.84 0.78 -5.80 16 2 C 0.27 3.65 12.42 -22.47 -0.28 3.37 16 3 C -0.18 -2.29 5.78 -106.32 -0.61 -2.90 16 4 C 0.46 6.66 7.46 -155.13 -1.16 5.51 16 5 N -0.70 -11.09 5.13 -53.78 -0.28 -11.37 16 6 C 0.16 2.95 2.36 -67.98 -0.16 2.79 16 7 H 0.09 1.69 7.54 -51.93 -0.39 1.29 16 8 C -0.11 -2.24 5.52 -26.63 -0.15 -2.38 16 9 C -0.01 -0.14 5.59 -27.48 -0.15 -0.30 16 10 C -0.49 -12.62 5.51 -98.92 -0.55 -13.16 16 11 C 0.08 2.07 5.46 -17.82 -0.10 1.98 16 12 N -0.89 -25.24 12.73 55.43 0.71 -24.53 16 13 Si 0.89 21.08 26.80 -169.99 -4.56 16.53 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 C 0.02 0.38 5.97 -27.48 -0.16 0.21 16 18 C -0.12 -2.39 5.40 -26.63 -0.14 -2.53 16 19 N -0.53 -7.38 9.19 -12.08 -0.11 -7.49 16 20 C 0.20 2.10 10.73 -17.34 -0.19 1.92 16 21 C -0.25 -2.22 5.15 -104.75 -0.54 -2.76 16 22 C 0.06 0.62 5.59 -104.17 -0.58 0.04 16 23 C -0.09 -0.75 5.05 -27.96 -0.14 -0.89 16 24 C -0.16 -0.97 5.61 -26.90 -0.15 -1.12 16 25 C 0.05 0.28 6.27 -4.19 -0.03 0.25 16 26 N -0.67 -4.64 6.94 -115.50 -0.80 -5.44 16 27 C 0.11 0.71 5.84 -4.97 -0.03 0.68 16 28 H 0.40 6.19 7.44 -40.82 -0.30 5.89 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.02 0.57 5.17 -51.93 -0.27 0.30 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.06 1.61 7.07 -51.93 -0.37 1.25 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.04 0.66 8.14 -51.94 -0.42 0.24 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.16 1.20 7.83 -52.49 -0.41 0.79 16 39 H 0.08 0.71 6.92 -51.93 -0.36 0.35 16 40 H 0.09 0.64 7.72 -51.93 -0.40 0.24 16 41 H 0.08 0.54 5.45 -51.93 -0.28 0.26 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.36 8.04 -51.93 -0.42 -0.06 16 45 H 0.34 2.44 8.40 -39.29 -0.33 2.11 16 46 H 0.08 0.50 7.74 -51.93 -0.40 0.10 16 47 H 0.08 0.51 5.75 -51.93 -0.30 0.22 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -28.51 364.86 -10.63 -39.15 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.75 Total: 2.76 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -5.12 Total: -9.30 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.29 Total: -54.63 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.56 Total: 16.53 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.51 -10.63 -39.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.374 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds