Wall clock time and date at job start Tue Mar 31 2020 14:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.40451 * 120.53088 * 191.12890 * 3 2 1 5 5 N 1.38403 * 119.94685 * 0.16879 * 4 3 2 6 6 C 1.46499 * 120.00132 * 179.72565 * 5 4 3 7 7 H 1.09002 * 109.35112 * 324.81986 * 6 5 4 8 8 C 1.52958 * 109.41346 * 84.63971 * 6 5 4 9 9 C 1.53230 * 109.40140 * 183.70620 * 8 6 5 10 10 C 1.51275 * 108.53711 * 305.37328 * 9 8 6 11 11 C 1.37877 * 120.85195 * 231.32607 * 10 9 8 12 12 N 1.31513 * 120.00019 * 180.02562 * 11 10 9 13 13 Si 1.86802 * 119.99863 * 0.02562 * 11 10 9 14 14 H 1.48498 * 109.47121 * 59.99882 * 13 11 10 15 15 H 1.48496 * 109.47090 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47089 * 300.00226 * 13 11 10 17 17 C 1.51268 * 118.29903 * 51.35065 * 10 9 8 18 18 C 1.52955 * 109.41082 * 204.99878 * 6 5 4 19 19 N 1.32362 * 120.10959 * 179.88549 * 4 3 2 20 20 C 1.31683 * 121.70148 * 359.67801 * 19 4 3 21 21 C 1.38986 * 121.52871 * 359.94130 * 20 19 4 22 22 C 1.37343 * 119.17186 * 1.11756 * 21 20 19 23 23 C 1.50630 * 123.24222 * 177.94231 * 22 21 20 24 24 C 1.52909 * 110.90282 * 29.50620 * 23 22 21 25 25 C 1.52763 * 108.55083 * 270.44806 * 24 23 22 26 26 N 1.46460 * 110.22762 * 61.32320 * 25 24 23 27 27 C 1.47064 * 109.57857 * 33.31637 * 26 25 24 28 28 H 0.97004 * 120.00015 * 359.71409 * 5 4 3 29 29 H 1.09002 * 109.48188 * 63.73289 * 8 6 5 30 30 H 1.08993 * 109.49457 * 303.69301 * 8 6 5 31 31 H 1.09003 * 109.62537 * 185.66250 * 9 8 6 32 32 H 1.08996 * 109.78679 * 65.18089 * 9 8 6 33 33 H 0.97003 * 119.99860 * 179.97438 * 12 11 10 34 34 H 1.08999 * 109.62523 * 188.93910 * 17 10 9 35 35 H 1.08996 * 109.78786 * 68.46038 * 17 10 9 36 36 H 1.08988 * 109.48772 * 56.31452 * 18 6 5 37 37 H 1.09004 * 109.47866 * 296.26625 * 18 6 5 38 38 H 1.08000 * 119.23281 * 179.97438 * 20 19 4 39 39 H 1.08992 * 109.19079 * 149.87590 * 23 22 21 40 40 H 1.08998 * 109.18622 * 269.14420 * 23 22 21 41 41 H 1.09000 * 109.62244 * 30.16131 * 24 23 22 42 42 H 1.08998 * 109.62687 * 150.72154 * 24 23 22 43 43 H 1.08997 * 109.34459 * 181.56319 * 25 24 23 44 44 H 1.09000 * 109.34014 * 301.24635 * 25 24 23 45 45 H 1.00901 * 111.00011 * 270.35616 * 26 25 24 46 46 H 1.09003 * 109.16832 * 146.12766 * 27 26 25 47 47 H 1.08992 * 109.16816 * 26.91886 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2810 1.1880 0.2335 5 7 2.5985 2.3687 0.4694 6 6 3.3410 3.6067 0.7191 7 1 4.2477 3.3774 1.2788 8 6 3.7170 4.2520 -0.6157 9 6 4.5724 5.4966 -0.3564 10 6 3.8202 6.4090 0.5871 11 6 3.6332 7.7409 0.2837 12 7 2.9771 8.5191 1.1164 13 14 4.3118 8.4399 -1.3101 14 1 3.7094 7.7215 -2.4618 15 1 3.9782 9.8842 -1.3989 16 1 5.7867 8.2694 -1.3371 17 6 3.2790 5.8228 1.8723 18 6 2.4705 4.5663 1.5321 19 7 4.6046 1.1786 0.2339 20 6 5.2888 0.0730 0.0251 21 6 4.6542 -1.1419 -0.2053 22 6 3.2819 -1.1846 -0.2382 23 6 2.5015 -2.4408 -0.5247 24 6 3.2702 -3.6784 -0.0605 25 6 4.1542 -4.1608 -1.2092 26 7 5.1215 -3.1233 -1.5739 27 6 5.5106 -2.3683 -0.3733 28 1 1.6285 2.3765 0.4693 29 1 2.8106 4.5385 -1.1491 30 1 4.2831 3.5406 -1.2169 31 1 4.7584 6.0154 -1.2968 32 1 5.5208 5.2050 0.0947 33 1 2.8459 9.4563 0.9031 34 1 2.6341 6.5511 2.3638 35 1 4.1042 5.5592 2.5339 36 1 2.1534 4.0777 2.4533 37 1 1.5937 4.8454 0.9478 38 1 6.3681 0.1111 0.0337 39 1 1.5458 -2.3958 -0.0026 40 1 2.3201 -2.5131 -1.5971 41 1 3.8922 -3.4226 0.7974 42 1 2.5670 -4.4642 0.2152 43 1 4.6878 -5.0599 -0.9012 44 1 3.5304 -4.3894 -2.0733 45 1 4.7445 -2.5097 -2.2806 46 1 6.5542 -2.0665 -0.4628 47 1 5.3974 -3.0065 0.5030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:45 Heat of formation + Delta-G solvation = 38.122665 kcal Electronic energy + Delta-G solvation = -27614.638474 eV Core-core repulsion = 23988.468628 eV Total energy + Delta-G solvation = -3626.169846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.01410 -39.69946 -38.48235 -37.79589 -35.90203 -34.48194 -33.79347 -32.52965 -31.59610 -31.10634 -28.75390 -27.06412 -26.18406 -25.15805 -23.94886 -23.30844 -21.96281 -21.36966 -21.14936 -19.50872 -18.64025 -18.22565 -17.75776 -17.02029 -16.43864 -16.26552 -16.08013 -15.84322 -15.25692 -15.05234 -14.97763 -14.65238 -14.61346 -14.40480 -14.19340 -14.09434 -14.01538 -13.96889 -13.67114 -13.43202 -13.29270 -12.83538 -12.75295 -12.60897 -12.53043 -12.35363 -12.01678 -11.95573 -11.90945 -11.72609 -11.55301 -11.15555 -10.85722 -10.62360 -10.55117 -10.48327 -10.39079 -9.40163 -8.65790 -8.18675 -6.12415 -0.28652 0.36565 1.38918 1.39897 1.47749 1.49931 1.91682 2.06935 2.39574 2.80574 2.86277 3.10199 3.39192 3.58215 3.64071 3.80063 3.86178 4.00343 4.05044 4.15493 4.21342 4.23633 4.37694 4.50440 4.62799 4.64554 4.68257 4.76656 4.84535 4.90766 4.95974 5.00410 5.04614 5.04894 5.13606 5.17225 5.22267 5.23138 5.29935 5.36018 5.56615 5.58524 5.62926 5.73734 5.79246 6.04716 6.12670 6.24720 6.33251 6.38284 6.52308 6.93655 7.14361 7.45749 8.92325 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.002927 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.600774 B = 9563.368733 C =10224.108587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.281 3.719 3 C -0.187 4.187 4 C 0.447 3.553 5 N -0.707 5.707 6 C 0.179 3.821 7 H 0.082 0.918 8 C -0.103 4.103 9 C -0.008 4.008 10 C -0.500 4.500 11 C 0.023 3.977 12 N -0.931 5.931 13 Si 0.942 3.058 14 H -0.269 1.269 15 H -0.295 1.295 16 H -0.263 1.263 17 C 0.013 3.987 18 C -0.107 4.107 19 N -0.555 5.555 20 C 0.203 3.797 21 C -0.227 4.227 22 C 0.063 3.937 23 C -0.092 4.092 24 C -0.149 4.149 25 C 0.049 3.951 26 N -0.678 5.678 27 C 0.107 3.893 28 H 0.403 0.597 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.024 0.976 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.028 0.972 35 H 0.006 0.994 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.194 0.806 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.343 0.657 46 H 0.100 0.900 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 -26.697 -4.102 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.032 4.032 3 C -0.200 4.200 4 C 0.208 3.792 5 N -0.334 5.334 6 C 0.076 3.924 7 H 0.100 0.900 8 C -0.142 4.142 9 C -0.046 4.046 10 C -0.519 4.519 11 C -0.176 4.176 12 N -0.571 5.571 13 Si 0.768 3.232 14 H -0.194 1.194 15 H -0.222 1.222 16 H -0.188 1.188 17 C -0.025 4.025 18 C -0.146 4.146 19 N -0.272 5.272 20 C 0.039 3.961 21 C -0.234 4.234 22 C 0.053 3.947 23 C -0.129 4.129 24 C -0.188 4.188 25 C -0.081 4.081 26 N -0.306 5.306 27 C -0.022 4.022 28 H 0.239 0.761 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.024 0.976 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.211 0.789 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.160 0.840 46 H 0.118 0.882 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.759 -25.953 -3.871 26.668 hybrid contribution -1.566 1.217 -0.483 2.041 sum 3.193 -24.736 -4.354 25.318 Atomic orbital electron populations 1.81277 1.12624 1.08139 1.12108 1.25496 0.92423 0.93022 0.92281 1.16311 0.84433 0.95411 1.23830 1.18376 0.88894 0.84738 0.87232 1.45069 1.08483 1.06061 1.73742 1.20689 0.94566 0.81280 0.95914 0.90003 1.21768 0.99090 0.97030 0.96277 1.19584 0.95743 0.93812 0.95446 1.20651 1.33243 0.93549 1.04480 1.25585 0.95333 0.97121 0.99512 1.69957 1.42631 1.06269 1.38259 0.85822 0.79753 0.76625 0.80970 1.19388 1.22212 1.18811 1.19256 0.94966 0.92821 0.95491 1.21759 0.98239 0.96620 0.97964 1.67446 1.05133 1.32158 1.22462 1.23499 1.01367 0.85448 0.85741 1.20996 0.92727 0.99008 1.10620 1.19838 0.93240 0.92527 0.89094 1.20766 0.97982 0.91274 1.02839 1.22316 0.99781 0.96198 1.00471 1.22174 0.93050 0.95667 0.97167 1.61384 1.42618 1.16228 1.10344 1.21016 0.97886 0.89367 0.93976 0.76096 0.94456 0.92684 0.95705 0.95336 0.92818 0.95323 0.97554 0.92994 0.93955 0.78932 0.91630 0.88870 0.90060 0.89556 0.89926 0.90765 0.84012 0.88153 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.09 18.54 19.01 0.35 -13.74 16 2 C 0.28 7.56 12.42 88.33 1.10 8.65 16 3 C -0.19 -4.48 5.78 -20.97 -0.12 -4.60 16 4 C 0.45 12.31 7.46 133.60 1.00 13.31 16 5 N -0.71 -22.05 5.13 -324.07 -1.66 -23.72 16 6 C 0.18 6.54 2.36 44.96 0.11 6.64 16 7 H 0.08 3.09 7.54 -2.39 -0.02 3.08 16 8 C -0.10 -4.01 5.52 30.66 0.17 -3.84 16 9 C -0.01 -0.35 5.59 30.11 0.17 -0.18 16 10 C -0.50 -25.97 5.51 -16.17 -0.09 -26.06 16 11 C 0.02 1.25 5.46 84.65 0.46 1.71 16 12 N -0.93 -54.68 12.73 21.45 0.27 -54.41 16 13 Si 0.94 43.54 26.80 68.60 1.84 45.38 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 15 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 C 0.01 0.63 5.97 30.11 0.18 0.81 16 18 C -0.11 -4.39 5.40 30.66 0.17 -4.23 16 19 N -0.56 -14.34 9.19 -192.13 -1.76 -16.10 16 20 C 0.20 3.52 10.73 84.89 0.91 4.43 16 21 C -0.23 -3.27 5.15 -19.95 -0.10 -3.38 16 22 C 0.06 1.11 5.59 -19.57 -0.11 1.00 16 23 C -0.09 -1.26 5.05 29.80 0.15 -1.10 16 24 C -0.15 -1.36 5.61 30.48 0.17 -1.19 16 25 C 0.05 0.40 6.27 86.31 0.54 0.94 16 26 N -0.68 -6.84 6.94 -519.32 -3.60 -10.44 16 27 C 0.11 1.01 5.84 85.47 0.50 1.51 16 28 H 0.40 12.37 7.44 -92.71 -0.69 11.68 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.02 1.09 5.17 -2.39 -0.01 1.08 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 34 H 0.03 1.57 7.07 -2.39 -0.02 1.55 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.19 2.06 7.83 -2.91 -0.02 2.04 16 39 H 0.07 1.09 6.92 -2.39 -0.02 1.07 16 40 H 0.09 1.17 7.72 -2.39 -0.02 1.15 16 41 H 0.08 0.78 5.45 -2.39 -0.01 0.77 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 44 H 0.07 0.53 8.04 -2.39 -0.02 0.51 16 45 H 0.34 3.69 8.40 -89.69 -0.75 2.93 16 46 H 0.10 0.72 7.74 -2.39 -0.02 0.70 16 47 H 0.09 0.76 5.75 -2.39 -0.01 0.75 16 Total: -1.00 -62.89 364.86 0.21 -62.68 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -0.42 Total: 15.93 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 5.19 Total: -5.58 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -6.40 Total: -118.41 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.84 Total: 45.38 kcal Total: -62.89 0.21 -62.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.801 kcal (2) G-P(sol) polarization free energy of solvation -62.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds