Wall clock time and date at job start Tue Mar 31 2020 14:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48495 * 109.47150 * 270.00085 * 3 2 1 5 5 H 1.48499 * 109.47205 * 30.00183 * 3 2 1 6 6 H 1.48499 * 109.47171 * 149.99748 * 3 2 1 7 7 C 1.37871 * 120.00151 * 179.97438 * 2 1 3 8 8 C 1.51276 * 120.84883 * 0.02562 * 7 2 1 9 9 C 1.53228 * 108.53512 * 231.32177 * 8 7 2 10 10 C 1.52951 * 109.40999 * 305.37424 * 9 8 7 11 11 H 1.09002 * 109.41199 * 303.49394 * 10 9 8 12 12 N 1.46494 * 109.35965 * 183.66819 * 10 9 8 13 13 C 1.38324 * 119.99861 * 84.67930 * 12 10 9 14 14 N 1.32993 * 120.84046 * 359.72341 * 13 12 10 15 15 C 1.32072 * 121.03181 * 179.72044 * 14 13 12 16 16 C 1.50704 * 118.64446 * 180.26787 * 15 14 13 17 17 C 1.53780 * 113.61633 * 219.45250 * 16 15 14 18 18 C 1.53961 * 87.01584 * 220.04590 * 17 16 15 19 19 C 1.53775 * 87.11499 * 25.36227 * 18 17 16 20 20 N 1.31555 * 122.71840 * 0.59227 * 15 14 13 21 21 C 1.33202 * 120.70905 * 359.69951 * 20 15 14 22 22 N 1.36778 * 134.29980 * 179.97438 * 21 20 15 23 23 H 0.97005 * 124.98333 * 0.02562 * 22 21 20 24 24 C 1.37095 * 110.02326 * 179.97438 * 22 21 20 25 25 C 1.34307 * 109.81020 * 0.02562 * 24 22 21 26 26 C 1.40305 * 120.83784 * 179.97438 * 13 12 10 27 27 C 1.52963 * 109.81716 * 63.59625 * 10 9 8 28 28 C 1.51269 * 120.85240 * 179.97438 * 7 2 1 29 29 H 0.97003 * 119.99821 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.62630 * 351.04217 * 8 7 2 31 31 H 1.09003 * 109.62166 * 111.61116 * 8 7 2 32 32 H 1.08999 * 109.47771 * 65.35953 * 9 8 7 33 33 H 1.09003 * 109.47886 * 185.39008 * 9 8 7 34 34 H 0.97000 * 119.99794 * 264.68509 * 12 10 9 35 35 H 1.09004 * 112.84715 * 350.64768 * 16 15 14 36 36 H 1.08996 * 113.61438 * 334.56246 * 17 16 15 37 37 H 1.08996 * 113.61513 * 105.46896 * 17 16 15 38 38 H 1.09002 * 113.53396 * 270.80976 * 18 17 16 39 39 H 1.09002 * 113.73740 * 139.94730 * 18 17 16 40 40 H 1.08997 * 113.61485 * 220.09151 * 19 18 17 41 41 H 1.08998 * 113.69043 * 89.19393 * 19 18 17 42 42 H 1.07998 * 125.09383 * 180.02562 * 24 22 21 43 43 H 1.07997 * 126.59371 * 180.02562 * 25 24 22 44 44 H 1.08997 * 109.48191 * 176.42349 * 27 10 9 45 45 H 1.08997 * 109.49004 * 56.39212 * 27 10 9 46 46 H 1.08995 * 109.62532 * 248.39207 * 28 7 2 47 47 H 1.09001 * 109.62320 * 8.96247 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8230 -3.3825 1.1351 10 6 3.3399 -3.5070 0.9841 11 1 3.5740 -3.9122 -0.0003 12 7 3.8586 -4.4069 2.0171 13 6 3.8513 -5.7746 1.8100 14 7 3.3724 -6.2907 0.6817 15 6 3.3686 -7.5956 0.4777 16 6 2.8186 -8.1219 -0.8229 17 6 1.9922 -9.4093 -0.6664 18 6 2.6615 -9.9008 -1.9629 19 6 3.8290 -8.9586 -1.6255 20 7 3.8193 -8.4554 1.3655 21 6 4.3139 -8.0356 2.5289 22 7 4.8424 -8.6620 3.6240 23 1 4.9451 -9.6218 3.7201 24 6 5.2069 -7.7341 4.5651 25 6 4.9301 -6.4986 4.1172 26 6 4.3441 -6.6526 2.7871 27 6 3.9907 -2.1309 1.1352 28 6 3.5171 -1.2164 0.0000 29 1 -0.4850 0.8401 -0.0004 30 1 0.2037 -2.3409 0.1599 31 1 1.4201 -3.0192 -0.9538 32 1 1.5898 -2.9196 2.0940 33 1 1.3706 -4.3732 1.0900 34 1 4.2070 -4.0438 2.8463 35 1 2.3212 -7.3529 -1.4141 36 1 2.2598 -9.9957 0.2125 37 1 0.9177 -9.2526 -0.7609 38 1 2.1200 -9.6192 -2.8660 39 1 2.9327 -10.9564 -1.9437 40 1 4.2351 -8.4385 -2.4930 41 1 4.6004 -9.4204 -1.0093 42 1 5.6501 -7.9625 5.5231 43 1 5.1071 -5.5699 4.6392 44 1 5.0748 -2.2346 1.0901 45 1 3.7065 -1.6976 2.0941 46 1 3.8772 -1.6005 -0.9544 47 1 3.8983 -0.2077 0.1591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:03 Heat of formation + Delta-G solvation = 90.609308 kcal Electronic energy + Delta-G solvation = -27728.872804 eV Core-core repulsion = 24104.978950 eV Total energy + Delta-G solvation = -3623.893854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64986 -39.29029 -38.20114 -37.04105 -34.74747 -32.43726 -31.34647 -30.73336 -29.58499 -29.20284 -26.98880 -25.92713 -25.54352 -23.32861 -22.28251 -21.60888 -21.34670 -20.55129 -19.61167 -19.34829 -18.77236 -16.88717 -16.29392 -16.09298 -15.42924 -15.37717 -15.22077 -14.74970 -14.41185 -14.02448 -13.46231 -13.43970 -13.27563 -13.15732 -12.92060 -12.49779 -12.44462 -12.35303 -12.20735 -11.90378 -11.50405 -11.25804 -10.95870 -10.90868 -10.71435 -10.56261 -10.52762 -10.29590 -10.24102 -10.10368 -9.86401 -9.47626 -9.09194 -8.91263 -8.82204 -8.71467 -8.50262 -8.42262 -7.30522 -6.07660 -3.98929 1.24717 1.75677 2.67941 2.74836 3.27346 3.35051 3.35894 3.49341 4.14085 4.27624 4.38678 4.59381 4.71097 4.77872 4.86317 4.93138 5.07458 5.15481 5.18710 5.24480 5.61055 5.66175 5.70501 5.76439 5.80723 5.88941 5.92438 5.92913 6.01633 6.20666 6.21660 6.28803 6.38646 6.51575 6.56769 6.65717 6.75111 6.82247 6.88321 7.04407 7.07089 7.10054 7.16388 7.38930 7.45347 7.64078 7.68231 7.80167 7.89615 8.02866 8.42038 8.76070 8.99757 9.56107 11.01730 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.003492 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.816274 B = 8017.447196 C = 9520.027221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.487 4.487 8 C 0.013 3.987 9 C -0.111 4.111 10 C 0.160 3.840 11 H 0.083 0.917 12 N -0.692 5.692 13 C 0.497 3.503 14 N -0.586 5.586 15 C 0.398 3.602 16 C -0.044 4.044 17 C -0.122 4.122 18 C -0.140 4.140 19 C -0.121 4.121 20 N -0.581 5.581 21 C 0.345 3.655 22 N -0.574 5.574 23 H 0.417 0.583 24 C 0.023 3.977 25 C -0.158 4.158 26 C -0.280 4.280 27 C -0.114 4.114 28 C -0.016 4.016 29 H 0.264 0.736 30 H 0.056 0.944 31 H 0.007 0.993 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.404 0.596 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.174 0.826 43 H 0.146 0.854 44 H 0.036 0.964 45 H 0.054 0.946 46 H 0.020 0.980 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.627 -17.672 5.554 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.506 4.506 8 C -0.024 4.024 9 C -0.150 4.150 10 C 0.058 3.942 11 H 0.101 0.899 12 N -0.319 5.319 13 C 0.247 3.753 14 N -0.314 5.314 15 C 0.127 3.873 16 C -0.065 4.065 17 C -0.160 4.160 18 C -0.177 4.177 19 C -0.159 4.159 20 N -0.308 5.308 21 C 0.106 3.894 22 N -0.182 5.182 23 H 0.254 0.746 24 C -0.102 4.102 25 C -0.184 4.184 26 C -0.294 4.294 27 C -0.153 4.153 28 C -0.054 4.054 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.025 0.975 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.239 0.761 35 H 0.134 0.866 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.191 0.809 43 H 0.164 0.836 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.038 0.962 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.083 -17.856 4.694 20.576 hybrid contribution 0.967 1.053 1.467 2.048 sum 10.050 -16.803 6.161 20.526 Atomic orbital electron populations 1.69847 1.06141 1.26827 1.49917 1.24849 0.94699 0.98482 0.94655 0.86703 0.79929 0.83452 0.78500 1.20413 1.21710 1.19016 1.20065 0.89244 0.91632 1.49672 1.19334 0.98507 0.92570 0.92032 1.21946 0.93337 0.98473 1.01246 1.21122 0.94764 0.88146 0.90206 0.89874 1.45160 1.64010 1.01563 1.21206 1.18061 0.84866 0.85405 0.86986 1.68001 1.26982 1.14688 1.21757 1.22192 0.88595 0.83445 0.93092 1.21398 0.97981 0.96754 0.90345 1.22948 0.98803 0.95655 0.98642 1.22823 0.97611 0.99331 0.97954 1.22874 0.96638 0.97074 0.99354 1.66967 1.22021 1.40065 1.01736 1.18065 0.94715 0.88228 0.88375 1.41388 1.54379 1.09224 1.13176 0.74621 1.21683 1.05495 0.88041 0.94950 1.21442 1.05540 0.97274 0.94178 1.19889 1.16019 0.94522 0.98980 1.21877 0.96792 0.94961 1.01639 1.19774 0.96901 0.95292 0.93466 0.92638 0.92498 0.97503 0.93644 0.94585 0.76092 0.86631 0.88919 0.91453 0.90099 0.91431 0.91291 0.89661 0.80851 0.83645 0.94525 0.92689 0.96199 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 12.73 55.43 0.71 -24.90 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 20.78 27.53 -169.99 -4.68 16.10 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -5.94 6.10 56.52 0.35 -5.60 16 7 C -0.49 -12.70 5.51 -98.92 -0.55 -13.24 16 8 C 0.01 0.34 5.97 -27.48 -0.16 0.18 16 9 C -0.11 -2.44 5.51 -26.64 -0.15 -2.59 16 10 C 0.16 3.13 2.38 -67.98 -0.16 2.97 16 11 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 12 N -0.69 -11.62 5.20 -53.70 -0.28 -11.90 16 13 C 0.50 8.68 7.52 -154.73 -1.16 7.51 16 14 N -0.59 -10.75 9.26 -9.83 -0.09 -10.84 16 15 C 0.40 6.53 6.88 -157.16 -1.08 5.45 16 16 C -0.04 -0.60 4.14 -90.96 -0.38 -0.98 16 17 C -0.12 -1.40 7.57 -25.82 -0.20 -1.59 16 18 C -0.14 -1.34 8.09 -25.83 -0.21 -1.55 16 19 C -0.12 -1.37 7.60 -25.92 -0.20 -1.57 16 20 N -0.58 -9.07 9.24 -10.04 -0.09 -9.16 16 21 C 0.34 5.12 8.48 -155.85 -1.32 3.80 16 22 N -0.57 -6.12 6.03 -12.14 -0.07 -6.19 16 23 H 0.42 3.19 8.96 -40.82 -0.37 2.83 16 24 C 0.02 0.21 11.83 -16.58 -0.20 0.02 16 25 C -0.16 -1.85 10.98 -37.79 -0.41 -2.27 16 26 C -0.28 -4.34 6.32 -105.00 -0.66 -5.00 16 27 C -0.11 -2.24 5.40 -26.61 -0.14 -2.38 16 28 C -0.02 -0.37 5.60 -27.46 -0.15 -0.53 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 30 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 5.82 8.53 -40.82 -0.35 5.47 16 35 H 0.12 1.61 8.14 -51.93 -0.42 1.18 16 36 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.02 7.94 -51.93 -0.41 0.61 16 42 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.04 0.84 4.59 -51.93 -0.24 0.60 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -30.94 371.63 -13.34 -44.28 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.20 Total: 6.81 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -7.23 Total: -9.80 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 0.17 Total: -62.99 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.68 Total: 16.10 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.94 -13.34 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.892 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds