Wall clock time and date at job start Tue Mar 31 2020 14:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48495 * 109.47150 * 270.00085 * 3 2 1 5 5 H 1.48499 * 109.47205 * 30.00183 * 3 2 1 6 6 H 1.48499 * 109.47171 * 149.99748 * 3 2 1 7 7 C 1.37871 * 120.00151 * 179.97438 * 2 1 3 8 8 C 1.51276 * 120.84883 * 0.02562 * 7 2 1 9 9 C 1.53228 * 108.53512 * 231.32177 * 8 7 2 10 10 C 1.52951 * 109.40999 * 305.37424 * 9 8 7 11 11 H 1.09002 * 109.41199 * 303.49394 * 10 9 8 12 12 N 1.46494 * 109.35965 * 183.66819 * 10 9 8 13 13 C 1.38324 * 119.99861 * 84.67930 * 12 10 9 14 14 N 1.32993 * 120.84046 * 359.72341 * 13 12 10 15 15 C 1.32072 * 121.03181 * 179.72044 * 14 13 12 16 16 C 1.50704 * 118.64446 * 180.26787 * 15 14 13 17 17 C 1.53780 * 113.61633 * 219.45250 * 16 15 14 18 18 C 1.53961 * 87.01584 * 220.04590 * 17 16 15 19 19 C 1.53775 * 87.11499 * 25.36227 * 18 17 16 20 20 N 1.31555 * 122.71840 * 0.59227 * 15 14 13 21 21 C 1.33202 * 120.70905 * 359.69951 * 20 15 14 22 22 N 1.36778 * 134.29980 * 179.97438 * 21 20 15 23 23 H 0.97005 * 124.98333 * 0.02562 * 22 21 20 24 24 C 1.37095 * 110.02326 * 179.97438 * 22 21 20 25 25 C 1.34307 * 109.81020 * 0.02562 * 24 22 21 26 26 C 1.40305 * 120.83784 * 179.97438 * 13 12 10 27 27 C 1.52963 * 109.81716 * 63.59625 * 10 9 8 28 28 C 1.51269 * 120.85240 * 179.97438 * 7 2 1 29 29 H 0.97003 * 119.99821 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.62630 * 351.04217 * 8 7 2 31 31 H 1.09003 * 109.62166 * 111.61116 * 8 7 2 32 32 H 1.08999 * 109.47771 * 65.35953 * 9 8 7 33 33 H 1.09003 * 109.47886 * 185.39008 * 9 8 7 34 34 H 0.97000 * 119.99794 * 264.68509 * 12 10 9 35 35 H 1.09004 * 112.84715 * 350.64768 * 16 15 14 36 36 H 1.08996 * 113.61438 * 334.56246 * 17 16 15 37 37 H 1.08996 * 113.61513 * 105.46896 * 17 16 15 38 38 H 1.09002 * 113.53396 * 270.80976 * 18 17 16 39 39 H 1.09002 * 113.73740 * 139.94730 * 18 17 16 40 40 H 1.08997 * 113.61485 * 220.09151 * 19 18 17 41 41 H 1.08998 * 113.69043 * 89.19393 * 19 18 17 42 42 H 1.07998 * 125.09383 * 180.02562 * 24 22 21 43 43 H 1.07997 * 126.59371 * 180.02562 * 25 24 22 44 44 H 1.08997 * 109.48191 * 176.42349 * 27 10 9 45 45 H 1.08997 * 109.49004 * 56.39212 * 27 10 9 46 46 H 1.08995 * 109.62532 * 248.39207 * 28 7 2 47 47 H 1.09001 * 109.62320 * 8.96247 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8230 -3.3825 1.1351 10 6 3.3399 -3.5070 0.9841 11 1 3.5740 -3.9122 -0.0003 12 7 3.8586 -4.4069 2.0171 13 6 3.8513 -5.7746 1.8100 14 7 3.3724 -6.2907 0.6817 15 6 3.3686 -7.5956 0.4777 16 6 2.8186 -8.1219 -0.8229 17 6 1.9922 -9.4093 -0.6664 18 6 2.6615 -9.9008 -1.9629 19 6 3.8290 -8.9586 -1.6255 20 7 3.8193 -8.4554 1.3655 21 6 4.3139 -8.0356 2.5289 22 7 4.8424 -8.6620 3.6240 23 1 4.9451 -9.6218 3.7201 24 6 5.2069 -7.7341 4.5651 25 6 4.9301 -6.4986 4.1172 26 6 4.3441 -6.6526 2.7871 27 6 3.9907 -2.1309 1.1352 28 6 3.5171 -1.2164 0.0000 29 1 -0.4850 0.8401 -0.0004 30 1 0.2037 -2.3409 0.1599 31 1 1.4201 -3.0192 -0.9538 32 1 1.5898 -2.9196 2.0940 33 1 1.3706 -4.3732 1.0900 34 1 4.2070 -4.0438 2.8463 35 1 2.3212 -7.3529 -1.4141 36 1 2.2598 -9.9957 0.2125 37 1 0.9177 -9.2526 -0.7609 38 1 2.1200 -9.6192 -2.8660 39 1 2.9327 -10.9564 -1.9437 40 1 4.2351 -8.4385 -2.4930 41 1 4.6004 -9.4204 -1.0093 42 1 5.6501 -7.9625 5.5231 43 1 5.1071 -5.5699 4.6392 44 1 5.0748 -2.2346 1.0901 45 1 3.7065 -1.6976 2.0941 46 1 3.8772 -1.6005 -0.9544 47 1 3.8983 -0.2077 0.1591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:02 Heat of formation + Delta-G solvation = 74.323536 kcal Electronic energy + Delta-G solvation = -27729.579008 eV Core-core repulsion = 24104.978950 eV Total energy + Delta-G solvation = -3624.600058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.70620 -40.29179 -39.56314 -38.33747 -36.24903 -34.12497 -32.73118 -31.88966 -31.41785 -30.33732 -28.64984 -26.90992 -26.46488 -24.72237 -23.69677 -23.06358 -23.01413 -21.48725 -21.20359 -20.34515 -19.97843 -18.12029 -17.99863 -17.19166 -16.75199 -16.44777 -16.36134 -16.30045 -15.75793 -15.34787 -15.05881 -14.80212 -14.38287 -14.36072 -14.12903 -14.05543 -13.96505 -13.45600 -13.36911 -13.28909 -13.19658 -12.77948 -12.62952 -12.52210 -12.08995 -11.96465 -11.88618 -11.71851 -11.50482 -11.29632 -11.21712 -11.13249 -10.87920 -10.62328 -10.51559 -10.02251 -9.98509 -9.79852 -8.44719 -8.13868 -6.09827 0.13312 0.57762 1.42602 1.43622 1.52701 1.79050 1.82511 2.21440 2.43195 2.97871 3.12744 3.20848 3.59209 3.78557 3.87663 3.91262 3.94127 4.05939 4.10104 4.18361 4.26687 4.33334 4.55139 4.71281 4.72545 4.78225 4.83483 4.89032 4.95446 4.96734 5.02182 5.04815 5.09245 5.13856 5.17779 5.24923 5.26074 5.30271 5.44449 5.45725 5.58054 5.62990 5.64876 5.76474 5.82262 5.91074 5.96817 6.27183 6.36393 6.52613 6.88378 6.96413 7.48282 7.56303 8.97258 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.003492 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.816274 B = 8017.447196 C = 9520.027221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.019 3.981 3 Si 0.945 3.055 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.242 1.242 7 C -0.497 4.497 8 C 0.013 3.987 9 C -0.095 4.095 10 C 0.179 3.821 11 H 0.064 0.936 12 N -0.689 5.689 13 C 0.474 3.526 14 N -0.618 5.618 15 C 0.376 3.624 16 C -0.058 4.058 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.115 4.115 20 N -0.576 5.576 21 C 0.315 3.685 22 N -0.560 5.560 23 H 0.433 0.567 24 C 0.058 3.942 25 C -0.186 4.186 26 C -0.291 4.291 27 C -0.106 4.106 28 C -0.019 4.019 29 H 0.262 0.738 30 H 0.021 0.979 31 H -0.006 1.006 32 H 0.037 0.963 33 H 0.026 0.974 34 H 0.416 0.584 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.227 0.773 43 H 0.166 0.834 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.021 0.979 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.540 -18.994 7.468 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.166 1.166 7 C -0.517 4.517 8 C -0.025 4.025 9 C -0.134 4.134 10 C 0.075 3.925 11 H 0.082 0.918 12 N -0.319 5.319 13 C 0.224 3.776 14 N -0.347 5.347 15 C 0.105 3.895 16 C -0.078 4.078 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.154 4.154 20 N -0.303 5.303 21 C 0.075 3.925 22 N -0.169 5.169 23 H 0.273 0.727 24 C -0.067 4.067 25 C -0.211 4.211 26 C -0.305 4.305 27 C -0.144 4.144 28 C -0.057 4.057 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.013 0.987 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.254 0.746 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.244 0.756 43 H 0.184 0.816 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.039 0.961 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.035 -19.248 6.631 23.650 hybrid contribution 0.054 1.288 0.941 1.596 sum 12.090 -17.960 7.572 22.936 Atomic orbital electron populations 1.70010 1.07950 1.27462 1.52114 1.25696 0.95362 1.02086 0.94755 0.85749 0.79498 0.79047 0.78645 1.20176 1.22112 1.16552 1.20632 0.91385 0.91458 1.48187 1.19256 0.96776 0.93722 0.92769 1.21711 0.95651 0.96919 0.99146 1.20621 0.92606 0.88924 0.90348 0.91792 1.44748 1.64874 1.01165 1.21120 1.18308 0.85893 0.85670 0.87702 1.67964 1.27896 1.15920 1.22882 1.22636 0.89457 0.83151 0.94270 1.21559 0.99354 0.97235 0.89675 1.22913 0.98760 0.94458 0.99519 1.22776 0.96104 0.99867 0.97270 1.22835 0.96642 0.96993 0.98906 1.66996 1.21478 1.39758 1.02055 1.18433 0.95898 0.88920 0.89230 1.41526 1.52952 1.10423 1.11972 0.72738 1.22554 1.01957 0.86697 0.95475 1.21789 1.06954 0.99441 0.92959 1.20217 1.15666 0.94430 1.00194 1.21740 0.98499 0.93789 1.00377 1.19788 0.94424 0.96604 0.94873 0.92888 0.96053 0.98733 0.94406 0.95476 0.74640 0.87972 0.89615 0.91257 0.88891 0.89724 0.90873 0.90314 0.75632 0.81611 0.91473 0.92220 0.96079 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.97 12.73 21.45 0.27 -55.69 16 2 C 0.02 1.04 5.46 84.65 0.46 1.50 16 3 Si 0.94 42.64 27.53 68.60 1.89 44.53 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.24 -9.91 6.10 99.48 0.61 -9.30 16 7 C -0.50 -26.42 5.51 -16.17 -0.09 -26.51 16 8 C 0.01 0.69 5.97 30.11 0.18 0.87 16 9 C -0.09 -4.34 5.51 30.65 0.17 -4.17 16 10 C 0.18 7.04 2.38 44.96 0.11 7.15 16 11 H 0.06 2.78 7.58 -2.39 -0.02 2.76 16 12 N -0.69 -22.87 5.20 -323.80 -1.68 -24.55 16 13 C 0.47 16.63 7.52 133.40 1.00 17.63 16 14 N -0.62 -23.50 9.26 -185.01 -1.71 -25.21 16 15 C 0.38 12.70 6.88 138.74 0.95 13.65 16 16 C -0.06 -1.61 4.14 -11.01 -0.05 -1.66 16 17 C -0.12 -2.69 7.57 31.18 0.24 -2.46 16 18 C -0.12 -2.21 8.09 31.18 0.25 -1.95 16 19 C -0.12 -2.58 7.60 31.12 0.24 -2.35 16 20 N -0.58 -17.96 9.24 -185.69 -1.72 -19.68 16 21 C 0.31 8.96 8.48 133.96 1.14 10.09 16 22 N -0.56 -10.16 6.03 -192.31 -1.16 -11.32 16 23 H 0.43 5.12 8.96 -92.70 -0.83 4.29 16 24 C 0.06 0.81 11.83 82.97 0.98 1.79 16 25 C -0.19 -3.79 10.98 23.43 0.26 -3.53 16 26 C -0.29 -8.69 6.32 -20.11 -0.13 -8.82 16 27 C -0.11 -3.97 5.40 30.67 0.17 -3.80 16 28 C -0.02 -0.84 5.60 30.12 0.17 -0.67 16 29 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 30 H 0.02 1.25 7.07 -2.39 -0.02 1.23 16 31 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.42 11.43 8.53 -92.71 -0.79 10.63 16 35 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 36 H 0.09 2.07 7.42 -2.39 -0.02 2.05 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.08 1.86 7.94 -2.39 -0.02 1.84 16 42 H 0.23 0.77 8.06 -2.91 -0.02 0.74 16 43 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 44 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.04 1.91 4.59 -2.39 -0.01 1.90 16 Total: -1.00 -71.18 371.63 1.22 -69.95 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.71 Total: 25.20 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 6.05 Total: -3.24 kcal Atomic # 7 Polarization: -130.45 SS G_CDS: -6.00 Total: -136.45 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.89 Total: 44.53 kcal Total: -71.18 1.22 -69.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.277 kcal (2) G-P(sol) polarization free energy of solvation -71.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds