Wall clock time and date at job start Tue Mar 31 2020 14:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00161 * 2 1 4 4 C 1.53003 * 109.47253 * 124.99608 * 3 2 1 5 5 N 1.46897 * 109.47463 * 180.02562 * 4 3 2 6 6 C 1.46907 * 110.99728 * 66.04893 * 5 4 3 7 7 C 1.46896 * 111.00302 * 190.00121 * 5 4 3 8 8 C 1.52999 * 109.47164 * 170.00110 * 7 5 4 9 9 H 1.08998 * 109.70347 * 50.87639 * 8 7 5 10 10 C 1.53195 * 109.58837 * 171.23248 * 8 7 5 11 11 C 1.53039 * 109.31496 * 174.42406 * 10 8 7 12 12 C 1.53038 * 109.53600 * 298.63436 * 11 10 8 13 13 C 1.52763 * 109.38616 * 61.23888 * 12 11 10 14 14 N 1.46925 * 109.58816 * 290.52270 * 8 7 5 15 15 C 1.34774 * 120.63314 * 6.57668 * 14 8 7 16 16 O 1.21288 * 119.99673 * 354.03850 * 15 14 8 17 17 C 1.50696 * 120.00690 * 174.03731 * 15 14 8 18 18 S 1.80996 * 109.47448 * 180.02562 * 17 15 14 19 19 C 1.76205 * 99.99921 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99732 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00065 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00037 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00054 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46988 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.46943 * 60.00136 * 23 21 19 26 26 H 1.48498 * 109.47215 * 299.99965 * 23 21 19 27 27 H 1.07996 * 119.99981 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99771 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00148 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46673 * 5.00267 * 3 2 1 31 31 H 1.08994 * 109.47187 * 245.00088 * 3 2 1 32 32 H 1.09004 * 109.46935 * 60.00264 * 4 3 2 33 33 H 1.09001 * 109.47580 * 300.00727 * 4 3 2 34 34 H 1.08993 * 109.46872 * 183.95321 * 6 5 4 35 35 H 1.09004 * 109.46985 * 303.95725 * 6 5 4 36 36 H 1.08999 * 109.46867 * 63.95703 * 6 5 4 37 37 H 1.09002 * 109.46980 * 50.00142 * 7 5 4 38 38 H 1.08995 * 109.47584 * 290.00358 * 7 5 4 39 39 H 1.09005 * 109.49275 * 294.37221 * 10 8 7 40 40 H 1.08997 * 109.49472 * 54.46700 * 10 8 7 41 41 H 1.08995 * 109.45695 * 58.65143 * 11 10 8 42 42 H 1.08997 * 109.45943 * 178.61290 * 11 10 8 43 43 H 1.09001 * 109.49765 * 181.31675 * 12 11 10 44 44 H 1.09005 * 109.49837 * 301.38082 * 12 11 10 45 45 H 1.08993 * 109.51207 * 185.70512 * 13 12 11 46 46 H 1.09000 * 109.42977 * 65.42222 * 13 12 11 47 47 H 1.09000 * 109.46891 * 59.99885 * 17 15 14 48 48 H 1.09006 * 109.46929 * 300.00218 * 17 15 14 49 49 H 0.96998 * 119.99612 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 7 3.7691 2.6055 1.1821 6 6 2.8662 3.7341 1.4452 7 6 4.8721 2.5767 2.1518 8 6 5.7594 3.8069 1.9518 9 1 5.1435 4.7062 1.9398 10 6 6.7775 3.8969 3.0929 11 6 7.7492 5.0462 2.8149 12 6 8.5058 4.7731 1.5130 13 6 7.5112 4.6898 0.3564 14 7 6.4844 3.6897 0.6793 15 6 6.2168 2.6806 -0.1731 16 8 5.4502 1.7989 0.1525 17 6 6.8700 2.6477 -1.5308 18 16 6.3126 1.1810 -2.4331 19 6 7.2045 1.3905 -3.9383 20 1 7.8541 2.2437 -4.0667 21 6 7.0730 0.4586 -4.9584 22 7 6.2824 -0.5821 -4.8012 23 14 8.0191 0.6803 -6.5537 24 1 7.7077 -0.4428 -7.4740 25 1 9.4760 0.6953 -6.2672 26 1 7.6260 1.9642 -7.1880 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 3.7400 0.5066 1.0921 33 1 2.4772 1.2356 2.1131 34 1 3.4218 4.6688 1.3706 35 1 2.0588 3.7317 0.7129 36 1 2.4482 3.6389 2.4473 37 1 5.4639 1.6736 2.0022 38 1 4.4667 2.5818 3.1636 39 1 6.2558 4.0808 4.0322 40 1 7.3313 2.9606 3.1609 41 1 7.1920 5.9784 2.7224 42 1 8.4596 5.1280 3.6375 43 1 9.2143 5.5804 1.3277 44 1 9.0439 3.8287 1.5961 45 1 8.0345 4.3957 -0.5533 46 1 7.0411 5.6625 0.2117 47 1 7.9529 2.6120 -1.4122 48 1 6.5948 3.5431 -2.0881 49 1 5.7914 -0.6974 -3.9726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157573114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:40 Heat of formation + Delta-G solvation = 12.782203 kcal Electronic energy + Delta-G solvation = -27092.480280 eV Core-core repulsion = 23568.362789 eV Total energy + Delta-G solvation = -3524.117491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.34444 -37.37114 -36.99133 -34.57746 -32.80619 -32.46752 -31.97091 -28.96593 -28.81048 -27.13244 -25.35289 -24.73381 -24.02503 -21.99038 -21.12024 -20.48825 -19.56148 -18.89754 -18.01805 -16.65002 -16.03919 -15.59020 -15.32464 -14.98255 -14.90848 -14.58505 -14.15095 -13.99091 -13.92082 -13.80133 -13.37778 -13.27323 -12.94777 -12.64546 -12.52774 -12.29971 -12.19699 -11.97195 -11.91714 -11.74723 -11.67143 -11.35476 -11.07394 -10.99740 -10.89152 -10.88210 -10.73483 -10.57500 -10.28125 -10.14694 -9.46823 -9.13986 -8.95597 -8.53509 -8.28815 -8.12112 -7.74280 -6.56438 -6.56274 -3.91827 2.45956 2.99859 3.29455 3.37032 3.40516 3.57049 3.63219 4.15409 4.30428 4.58321 4.68226 4.76856 4.99570 5.04965 5.11736 5.17027 5.21122 5.27984 5.31003 5.33593 5.39969 5.47307 5.52065 5.55933 5.59082 5.63045 5.66774 5.72498 5.79970 5.82493 5.86652 5.89077 5.89394 5.93485 6.01371 6.06033 6.11979 6.15274 6.30917 6.41858 6.48647 6.81058 6.84652 6.97682 7.42493 7.48997 7.80383 7.97852 8.56190 8.87437 9.33175 10.87671 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008634 B = 0.004867 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.341129 B = 5751.553998 C = 8623.161570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.135 4.135 3 C -0.091 4.091 4 C 0.082 3.918 5 N -0.503 5.503 6 C 0.012 3.988 7 C 0.069 3.931 8 C 0.155 3.845 9 H 0.066 0.934 10 C -0.131 4.131 11 C -0.116 4.116 12 C -0.136 4.136 13 C 0.110 3.890 14 N -0.614 5.614 15 C 0.530 3.470 16 O -0.471 6.471 17 C -0.126 4.126 18 S -0.112 6.112 19 C -0.606 4.606 20 H 0.062 0.938 21 C 0.036 3.964 22 N -0.886 5.886 23 Si 1.081 2.919 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.286 1.286 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.015 0.985 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.014 0.986 37 H 0.100 0.900 38 H 0.017 0.983 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 11.304 16.685 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.153 4.153 3 C -0.128 4.128 4 C -0.046 4.046 5 N -0.227 5.227 6 C -0.136 4.136 7 C -0.059 4.059 8 C 0.051 3.949 9 H 0.084 0.916 10 C -0.170 4.170 11 C -0.153 4.153 12 C -0.174 4.174 13 C -0.013 4.013 14 N -0.351 5.351 15 C 0.317 3.683 16 O -0.341 6.341 17 C -0.277 4.277 18 S 0.114 5.886 19 C -0.754 4.754 20 H 0.081 0.919 21 C -0.175 4.175 22 N -0.520 5.520 23 Si 0.908 3.092 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.212 1.212 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.127 0.873 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.032 0.968 37 H 0.119 0.881 38 H 0.035 0.965 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.728 9.336 15.207 18.051 hybrid contribution 0.472 1.978 1.758 2.688 sum -2.256 11.314 16.965 20.516 Atomic orbital electron populations 1.23726 0.95938 1.01256 1.03926 1.23029 0.95850 0.99041 0.97420 1.20762 0.97373 0.94066 1.00621 1.21805 0.95180 0.92433 0.95140 1.62223 1.09115 1.02456 1.48891 1.22568 0.96967 0.95538 0.98554 1.22269 0.93204 0.99299 0.91121 1.21173 0.91979 0.98581 0.83171 0.91586 1.21957 0.97647 0.99567 0.97841 1.21470 0.98166 0.98228 0.97484 1.21858 0.97992 1.02466 0.95128 1.21549 0.89318 0.92213 0.98263 1.47877 1.39504 1.28393 1.19372 1.19982 0.81560 0.81549 0.85203 1.90693 1.32681 1.35685 1.75082 1.23364 1.02817 1.05221 0.96324 1.84665 1.62071 1.27112 1.14717 1.23720 1.33935 1.15673 1.02123 0.91933 1.25980 0.97037 0.92104 1.02334 1.70798 1.24884 1.27524 1.28827 0.83369 0.75308 0.76214 0.74353 1.20343 1.21230 1.21210 0.89076 0.88903 0.87339 0.92455 0.89092 0.89892 0.96697 0.92153 0.91617 0.96778 0.88140 0.96535 0.91265 0.91327 0.91974 0.91867 0.90934 0.91413 0.89561 0.92050 0.89952 0.89792 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.63 14.32 29.02 0.42 -2.21 16 2 C -0.13 -1.90 9.52 -36.02 -0.34 -2.24 16 3 C -0.09 -1.37 5.59 -27.88 -0.16 -1.53 16 4 C 0.08 1.23 4.25 -3.82 -0.02 1.22 16 5 N -0.50 -7.48 2.53 -242.92 -0.61 -8.10 16 6 C 0.01 0.15 9.14 60.07 0.55 0.70 16 7 C 0.07 0.94 3.62 -3.83 -0.01 0.92 16 8 C 0.16 1.86 2.91 -67.60 -0.20 1.67 16 9 H 0.07 0.77 6.20 -51.93 -0.32 0.45 16 10 C -0.13 -1.26 5.36 -26.61 -0.14 -1.41 16 11 C -0.12 -0.97 5.89 -26.69 -0.16 -1.12 16 12 C -0.14 -1.25 6.06 -26.83 -0.16 -1.41 16 13 C 0.11 1.24 6.29 -3.93 -0.02 1.22 16 14 N -0.61 -8.55 2.98 -165.48 -0.49 -9.04 16 15 C 0.53 9.59 7.40 -10.99 -0.08 9.51 16 16 O -0.47 -9.31 8.57 5.55 0.05 -9.26 16 17 C -0.13 -2.57 4.58 36.00 0.16 -2.41 16 18 S -0.11 -2.96 19.60 -107.50 -2.11 -5.07 16 19 C -0.61 -17.52 9.50 30.94 0.29 -17.23 16 20 H 0.06 1.75 7.80 -52.49 -0.41 1.34 16 21 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 22 N -0.89 -27.56 13.67 55.49 0.76 -26.81 16 23 Si 1.08 25.14 29.92 -169.99 -5.09 20.05 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 27 H 0.09 1.05 7.84 -52.49 -0.41 0.64 16 28 H 0.09 1.03 8.06 -52.48 -0.42 0.60 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.06 0.80 6.12 -51.93 -0.32 0.48 16 31 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 32 H 0.08 1.42 7.17 -51.93 -0.37 1.04 16 33 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 34 H 0.06 0.72 6.30 -51.93 -0.33 0.40 16 35 H 0.07 0.83 6.30 -51.93 -0.33 0.51 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.10 1.62 6.10 -51.93 -0.32 1.30 16 38 H 0.02 0.21 8.11 -51.93 -0.42 -0.21 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.03 5.97 -51.93 -0.31 0.72 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 1.60 7.43 -51.92 -0.39 1.22 16 48 H 0.08 1.68 8.13 -51.91 -0.42 1.25 16 49 H 0.28 8.80 7.12 -40.82 -0.29 8.51 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -32.19 386.63 -10.14 -42.32 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -8.50 Total: 3.45 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 0.03 Total: -13.38 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.35 Total: -43.94 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.05 Total: -9.26 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.09 Total: 20.05 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.11 Total: -5.07 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.19 -10.14 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157573114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.105 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds