Wall clock time and date at job start Tue Mar 31 2020 14:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00161 * 2 1 4 4 C 1.53003 * 109.47253 * 124.99608 * 3 2 1 5 5 N 1.46897 * 109.47463 * 180.02562 * 4 3 2 6 6 C 1.46907 * 110.99728 * 66.04893 * 5 4 3 7 7 C 1.46896 * 111.00302 * 190.00121 * 5 4 3 8 8 C 1.52999 * 109.47164 * 170.00110 * 7 5 4 9 9 H 1.08998 * 109.70347 * 50.87639 * 8 7 5 10 10 C 1.53195 * 109.58837 * 171.23248 * 8 7 5 11 11 C 1.53039 * 109.31496 * 174.42406 * 10 8 7 12 12 C 1.53038 * 109.53600 * 298.63436 * 11 10 8 13 13 C 1.52763 * 109.38616 * 61.23888 * 12 11 10 14 14 N 1.46925 * 109.58816 * 290.52270 * 8 7 5 15 15 C 1.34774 * 120.63314 * 6.57668 * 14 8 7 16 16 O 1.21288 * 119.99673 * 354.03850 * 15 14 8 17 17 C 1.50696 * 120.00690 * 174.03731 * 15 14 8 18 18 S 1.80996 * 109.47448 * 180.02562 * 17 15 14 19 19 C 1.76205 * 99.99921 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99732 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00065 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00037 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00054 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46988 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.46943 * 60.00136 * 23 21 19 26 26 H 1.48498 * 109.47215 * 299.99965 * 23 21 19 27 27 H 1.07996 * 119.99981 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99771 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00148 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46673 * 5.00267 * 3 2 1 31 31 H 1.08994 * 109.47187 * 245.00088 * 3 2 1 32 32 H 1.09004 * 109.46935 * 60.00264 * 4 3 2 33 33 H 1.09001 * 109.47580 * 300.00727 * 4 3 2 34 34 H 1.08993 * 109.46872 * 183.95321 * 6 5 4 35 35 H 1.09004 * 109.46985 * 303.95725 * 6 5 4 36 36 H 1.08999 * 109.46867 * 63.95703 * 6 5 4 37 37 H 1.09002 * 109.46980 * 50.00142 * 7 5 4 38 38 H 1.08995 * 109.47584 * 290.00358 * 7 5 4 39 39 H 1.09005 * 109.49275 * 294.37221 * 10 8 7 40 40 H 1.08997 * 109.49472 * 54.46700 * 10 8 7 41 41 H 1.08995 * 109.45695 * 58.65143 * 11 10 8 42 42 H 1.08997 * 109.45943 * 178.61290 * 11 10 8 43 43 H 1.09001 * 109.49765 * 181.31675 * 12 11 10 44 44 H 1.09005 * 109.49837 * 301.38082 * 12 11 10 45 45 H 1.08993 * 109.51207 * 185.70512 * 13 12 11 46 46 H 1.09000 * 109.42977 * 65.42222 * 13 12 11 47 47 H 1.09000 * 109.46891 * 59.99885 * 17 15 14 48 48 H 1.09006 * 109.46929 * 300.00218 * 17 15 14 49 49 H 0.96998 * 119.99612 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 7 3.7691 2.6055 1.1821 6 6 2.8662 3.7341 1.4452 7 6 4.8721 2.5767 2.1518 8 6 5.7594 3.8069 1.9518 9 1 5.1435 4.7062 1.9398 10 6 6.7775 3.8969 3.0929 11 6 7.7492 5.0462 2.8149 12 6 8.5058 4.7731 1.5130 13 6 7.5112 4.6898 0.3564 14 7 6.4844 3.6897 0.6793 15 6 6.2168 2.6806 -0.1731 16 8 5.4502 1.7989 0.1525 17 6 6.8700 2.6477 -1.5308 18 16 6.3126 1.1810 -2.4331 19 6 7.2045 1.3905 -3.9383 20 1 7.8541 2.2437 -4.0667 21 6 7.0730 0.4586 -4.9584 22 7 6.2824 -0.5821 -4.8012 23 14 8.0191 0.6803 -6.5537 24 1 7.7077 -0.4428 -7.4740 25 1 9.4760 0.6953 -6.2672 26 1 7.6260 1.9642 -7.1880 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6213 1.4026 -0.9313 32 1 3.7400 0.5066 1.0921 33 1 2.4772 1.2356 2.1131 34 1 3.4218 4.6688 1.3706 35 1 2.0588 3.7317 0.7129 36 1 2.4482 3.6389 2.4473 37 1 5.4639 1.6736 2.0022 38 1 4.4667 2.5818 3.1636 39 1 6.2558 4.0808 4.0322 40 1 7.3313 2.9606 3.1609 41 1 7.1920 5.9784 2.7224 42 1 8.4596 5.1280 3.6375 43 1 9.2143 5.5804 1.3277 44 1 9.0439 3.8287 1.5961 45 1 8.0345 4.3957 -0.5533 46 1 7.0411 5.6625 0.2117 47 1 7.9529 2.6120 -1.4122 48 1 6.5948 3.5431 -2.0881 49 1 5.7914 -0.6974 -3.9726 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157573114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:39 Heat of formation + Delta-G solvation = -5.056546 kcal Electronic energy + Delta-G solvation = -27093.253826 eV Core-core repulsion = 23568.362789 eV Total energy + Delta-G solvation = -3524.891037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.51124 -38.51685 -38.14456 -35.68698 -34.71189 -33.88487 -32.94639 -30.43827 -29.91945 -28.19333 -27.04234 -26.32775 -24.99229 -23.05546 -22.20137 -21.47247 -20.67757 -20.57231 -19.66848 -17.91047 -17.25087 -16.81789 -16.54927 -16.28586 -16.16145 -15.85332 -15.69287 -15.25352 -15.06198 -15.03673 -14.60816 -14.42063 -14.33330 -14.14433 -13.70338 -13.67324 -13.56533 -13.40116 -13.10866 -12.96812 -12.76383 -12.71673 -12.48858 -11.98147 -11.96479 -11.95153 -11.75282 -11.68784 -11.52625 -11.46348 -11.33233 -11.07115 -10.25905 -10.23036 -9.90567 -9.41108 -8.89208 -8.84941 -8.76409 -6.20865 1.31384 1.37182 1.52693 1.59740 1.80168 1.88408 2.22725 2.37139 3.04969 3.08700 3.17623 3.62623 3.88272 3.93824 3.98853 4.04089 4.13760 4.20147 4.24531 4.25584 4.28341 4.30662 4.40881 4.42941 4.47590 4.54009 4.63677 4.70673 4.71017 4.73615 4.84095 4.93889 4.96718 5.01856 5.07600 5.08723 5.17509 5.21328 5.22692 5.24275 5.47460 5.66100 5.71125 5.79024 5.86620 6.18734 6.29732 6.43492 6.54356 7.09766 7.50852 8.54367 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008634 B = 0.004867 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.341129 B = 5751.553998 C = 8623.161570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.165 4.165 3 C -0.079 4.079 4 C 0.092 3.908 5 N -0.525 5.525 6 C 0.016 3.984 7 C 0.073 3.927 8 C 0.155 3.845 9 H 0.081 0.919 10 C -0.126 4.126 11 C -0.111 4.111 12 C -0.131 4.131 13 C 0.102 3.898 14 N -0.605 5.605 15 C 0.526 3.474 16 O -0.494 6.494 17 C -0.103 4.103 18 S -0.177 6.177 19 C -0.616 4.616 20 H 0.067 0.933 21 C -0.017 4.017 22 N -0.913 5.913 23 Si 1.133 2.867 24 H -0.279 1.279 25 H -0.264 1.264 26 H -0.265 1.265 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 14.139 17.943 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.184 4.184 3 C -0.117 4.117 4 C -0.036 4.036 5 N -0.250 5.250 6 C -0.132 4.132 7 C -0.055 4.055 8 C 0.052 3.948 9 H 0.098 0.902 10 C -0.165 4.165 11 C -0.149 4.149 12 C -0.169 4.169 13 C -0.020 4.020 14 N -0.342 5.342 15 C 0.311 3.689 16 O -0.367 6.367 17 C -0.255 4.255 18 S 0.050 5.950 19 C -0.764 4.764 20 H 0.085 0.915 21 C -0.220 4.220 22 N -0.549 5.549 23 Si 0.951 3.049 24 H -0.204 1.204 25 H -0.189 1.189 26 H -0.190 1.190 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.107 0.893 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.325 12.219 16.515 20.675 hybrid contribution 0.306 1.161 1.480 1.905 sum -2.019 13.379 17.995 22.515 Atomic orbital electron populations 1.23963 0.95118 1.02734 1.00518 1.22964 0.96687 0.98190 1.00527 1.20599 0.97240 0.95287 0.98527 1.21624 0.94449 0.91948 0.95583 1.62145 1.09983 1.02774 1.50060 1.22546 0.96564 0.94843 0.99208 1.22164 0.92858 0.98792 0.91642 1.21359 0.92437 0.98088 0.82878 0.90151 1.21940 0.97302 0.99678 0.97547 1.21472 0.98119 0.97949 0.97337 1.21837 0.97709 1.02651 0.94738 1.21805 0.89212 0.92035 0.98962 1.47842 1.39670 1.27427 1.19214 1.19655 0.81600 0.82666 0.84962 1.90729 1.33711 1.36909 1.75315 1.23260 1.03307 1.01665 0.97266 1.84850 1.62913 1.31662 1.15567 1.24062 1.33748 1.15709 1.02889 0.91469 1.27722 0.97013 0.91245 1.06033 1.70917 1.26539 1.29157 1.28262 0.82766 0.75056 0.76943 0.70166 1.20428 1.18916 1.18991 0.87712 0.87154 0.88348 0.91036 0.93481 0.93085 0.95347 0.91249 0.92075 0.95279 0.91369 0.94791 0.89127 0.92817 0.90570 0.90169 0.88612 0.92885 0.90633 0.90080 0.89066 0.89285 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.45 14.32 67.78 0.97 -3.48 16 2 C -0.17 -4.83 9.52 25.65 0.24 -4.59 16 3 C -0.08 -2.52 5.59 29.85 0.17 -2.35 16 4 C 0.09 2.90 4.25 86.30 0.37 3.26 16 5 N -0.53 -15.77 2.53 -922.46 -2.33 -18.10 16 6 C 0.02 0.39 9.14 127.69 1.17 1.55 16 7 C 0.07 1.97 3.62 86.30 0.31 2.28 16 8 C 0.16 3.46 2.91 44.98 0.13 3.59 16 9 H 0.08 1.62 6.20 -2.39 -0.01 1.61 16 10 C -0.13 -2.09 5.36 30.67 0.16 -1.92 16 11 C -0.11 -1.43 5.89 30.62 0.18 -1.25 16 12 C -0.13 -2.04 6.06 30.53 0.19 -1.85 16 13 C 0.10 2.09 6.29 86.22 0.54 2.64 16 14 N -0.60 -16.27 2.98 -795.86 -2.37 -18.64 16 15 C 0.53 19.43 7.40 87.66 0.65 20.08 16 16 O -0.49 -20.59 8.57 -3.05 -0.03 -20.62 16 17 C -0.10 -4.31 4.58 71.23 0.33 -3.98 16 18 S -0.18 -9.81 19.60 -56.49 -1.11 -10.92 16 19 C -0.62 -36.36 9.50 67.95 0.65 -35.72 16 20 H 0.07 3.77 7.80 -2.91 -0.02 3.75 16 21 C -0.02 -1.00 5.49 84.86 0.47 -0.53 16 22 N -0.91 -58.72 13.67 21.65 0.30 -58.43 16 23 Si 1.13 50.35 29.92 68.60 2.05 52.41 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 27 H 0.10 2.22 7.84 -2.91 -0.02 2.20 16 28 H 0.11 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.10 3.02 8.06 -2.91 -0.02 2.99 16 30 H 0.07 2.01 6.12 -2.39 -0.01 2.00 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.91 7.17 -2.38 -0.02 1.89 16 33 H 0.03 0.80 8.12 -2.39 -0.02 0.78 16 34 H 0.07 1.50 6.30 -2.39 -0.02 1.49 16 35 H 0.06 1.49 6.30 -2.39 -0.02 1.48 16 36 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 2.30 6.10 -2.39 -0.01 2.28 16 38 H 0.03 0.79 8.11 -2.39 -0.02 0.78 16 39 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.05 0.99 8.14 -2.38 -0.02 0.98 16 45 H 0.08 1.70 5.97 -2.39 -0.01 1.69 16 46 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.09 3.60 7.43 -2.39 -0.02 3.58 16 48 H 0.09 3.59 8.13 -2.39 -0.02 3.57 16 49 H 0.26 17.40 7.12 -92.71 -0.66 16.74 16 Total: -1.00 -73.71 386.63 4.04 -69.67 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 1.01 Total: 26.93 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 6.52 Total: -22.28 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -4.41 Total: -95.17 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.03 Total: -20.62 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.41 kcal Atomic # 16 Polarization: -9.81 SS G_CDS: -1.11 Total: -10.92 kcal Total: -73.71 4.04 -69.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157573114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.611 kcal (2) G-P(sol) polarization free energy of solvation -73.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds