Wall clock time and date at job start Tue Mar 31 2020 15:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 H 1.09001 * 109.47398 * 305.00273 * 3 2 1 5 5 C 1.50694 * 109.47433 * 185.00122 * 3 2 1 6 6 H 1.08006 * 120.00185 * 240.00404 * 5 3 2 7 7 C 1.37878 * 120.00104 * 60.00250 * 5 3 2 8 8 N 1.31514 * 119.99757 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00126 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46922 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47223 * 119.99654 * 9 7 5 12 12 H 1.48499 * 109.46754 * 239.99980 * 9 7 5 13 13 N 1.46502 * 109.46972 * 64.99824 * 3 2 1 14 14 C 1.38413 * 120.00136 * 275.00213 * 13 3 2 15 15 N 1.32534 * 119.15345 * 359.97438 * 14 13 3 16 16 C 1.32388 * 120.99106 * 180.02562 * 15 14 13 17 17 C 1.38314 * 119.29337 * 0.02562 * 16 15 14 18 18 C 1.39795 * 118.44876 * 359.97438 * 17 16 15 19 19 C 1.48163 * 120.51677 * 179.97438 * 18 17 16 20 20 C 1.39508 * 120.04417 * 0.30145 * 19 18 17 21 21 C 1.37779 * 119.94709 * 180.23150 * 20 19 18 22 22 C 1.39090 * 120.05108 * 359.46868 * 21 20 19 23 23 N 1.39375 * 119.95078 * 180.25612 * 22 21 20 24 24 C 1.46493 * 120.00355 * 0.02562 * 23 22 21 25 25 C 1.46503 * 119.99646 * 179.97438 * 23 22 21 26 26 C 1.39091 * 120.09456 * 0.27761 * 22 21 20 27 27 C 1.37774 * 120.05160 * 359.97438 * 26 22 21 28 28 N 1.32354 * 119.14840 * 180.29288 * 14 13 3 29 29 H 1.09010 * 109.46825 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47275 * 299.99619 * 1 2 3 31 31 H 1.09001 * 109.47112 * 60.00162 * 1 2 3 32 32 H 1.09007 * 109.47394 * 240.00325 * 2 1 3 33 33 H 1.08998 * 109.47541 * 120.00463 * 2 1 3 34 34 H 0.97008 * 119.99625 * 180.02562 * 8 7 5 35 35 H 0.97007 * 119.99619 * 94.99716 * 13 3 2 36 36 H 1.07999 * 120.35429 * 179.97438 * 16 15 14 37 37 H 1.07997 * 120.77352 * 179.97438 * 17 16 15 38 38 H 1.08004 * 120.03043 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.97869 * 179.75100 * 21 20 19 40 40 H 1.09005 * 109.47657 * 89.99564 * 24 23 22 41 41 H 1.09001 * 109.47492 * 210.00241 * 24 23 22 42 42 H 1.09001 * 109.47186 * 329.99778 * 24 23 22 43 43 H 1.09005 * 109.46853 * 60.00719 * 25 23 22 44 44 H 1.09005 * 109.46878 * 179.97438 * 25 23 22 45 45 H 1.08997 * 109.47906 * 300.00177 * 25 23 22 46 46 H 1.07998 * 119.97006 * 179.97438 * 26 22 21 47 47 H 1.07998 * 120.02265 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4061 0.3368 -2.1729 9 14 6.0050 0.8803 -1.3812 10 1 6.5987 1.5455 -0.1937 11 1 6.4962 -0.5186 -1.4628 12 1 6.3998 1.6161 -2.6092 13 7 1.6523 2.0975 1.2518 14 6 0.4022 2.6796 1.3701 15 7 -0.4308 2.6352 0.3401 16 6 -1.6349 3.1805 0.4132 17 6 -2.0249 3.8055 1.5839 18 6 -1.1254 3.8368 2.6536 19 6 -1.4953 4.4946 3.9286 20 6 -2.7518 5.0837 4.0718 21 6 -3.0920 5.6990 5.2567 22 6 -2.1879 5.7234 6.3135 23 7 -2.5362 6.3417 7.5130 24 6 -3.8538 6.9648 7.6604 25 6 -1.5850 6.3676 8.6269 26 6 -0.9367 5.1320 6.1747 27 6 -0.5903 4.5202 4.9898 28 7 0.0717 3.2719 2.5066 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0616 -2.9496 35 1 2.2719 2.1231 1.9978 36 1 -2.3052 3.1387 -0.4325 37 1 -3.0014 4.2586 1.6696 38 1 -3.4561 5.0604 3.2533 39 1 -4.0630 6.1588 5.3667 40 1 -4.5622 6.2306 8.0442 41 1 -3.7845 7.8012 8.3560 42 1 -4.1953 7.3265 6.6904 43 1 -0.6772 6.8856 8.3175 44 1 -2.0307 6.8904 9.4732 45 1 -1.3392 5.3465 8.9187 46 1 -0.2361 5.1525 6.9964 47 1 0.3815 4.0615 4.8824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:56 Heat of formation + Delta-G solvation = 96.148161 kcal Electronic energy + Delta-G solvation = -26685.148080 eV Core-core repulsion = 23061.494408 eV Total energy + Delta-G solvation = -3623.653672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.42830 -39.50566 -36.77682 -35.92616 -33.16218 -32.97532 -31.50869 -31.18726 -30.03591 -29.06066 -28.42823 -26.64838 -25.53297 -23.41434 -23.28586 -22.51621 -21.68197 -20.66345 -19.52316 -17.90232 -17.57028 -16.62803 -16.15206 -15.65566 -15.38683 -15.24487 -15.06495 -14.75856 -14.63219 -13.99239 -13.83681 -13.62867 -13.49552 -13.24487 -12.99237 -12.91714 -12.65223 -12.48091 -12.32395 -12.25605 -11.73741 -11.57652 -11.23689 -11.00356 -10.89884 -10.88969 -10.61819 -10.44842 -10.22782 -10.05785 -9.65772 -9.61158 -9.32188 -8.97116 -8.95062 -8.47845 -8.31827 -7.39377 -7.01254 -6.10260 -4.18382 0.95033 1.45712 1.89240 2.27904 2.84330 3.25870 3.33710 3.37173 3.83790 3.87470 4.37669 4.59204 4.63727 4.68126 4.70411 4.87474 4.90332 4.98447 5.05430 5.21583 5.23690 5.31595 5.34136 5.39703 5.43645 5.58592 5.65552 5.77271 5.78101 6.04942 6.09728 6.16635 6.41145 6.44763 6.48661 6.65898 6.70390 6.74756 6.91306 6.98858 7.08559 7.22125 7.27805 7.41233 7.54370 7.68679 7.79887 7.87710 8.02887 8.25305 8.64117 8.81189 9.21949 9.48510 10.95128 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020857 B = 0.002435 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.137841 B =11495.685295 C =12435.349316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.127 4.127 3 C 0.281 3.719 4 H 0.055 0.945 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.671 5.671 14 C 0.575 3.425 15 N -0.556 5.556 16 C 0.189 3.811 17 C -0.317 4.317 18 C 0.263 3.737 19 C -0.106 4.106 20 C -0.043 4.043 21 C -0.206 4.206 22 C 0.222 3.778 23 N -0.638 5.638 24 C 0.092 3.908 25 C 0.095 3.905 26 C -0.204 4.204 27 C -0.023 4.023 28 N -0.587 5.587 29 H 0.020 0.980 30 H 0.031 0.969 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.402 0.598 36 H 0.157 0.843 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.122 0.878 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.018 11.514 17.282 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.179 3.821 4 H 0.073 0.927 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.301 5.301 14 C 0.218 3.782 15 N -0.279 5.279 16 C 0.020 3.980 17 C -0.344 4.344 18 C 0.116 3.884 19 C -0.109 4.109 20 C -0.063 4.063 21 C -0.228 4.228 22 C 0.120 3.880 23 N -0.349 5.349 24 C -0.051 4.051 25 C -0.048 4.048 26 C -0.226 4.226 27 C -0.043 4.043 28 N -0.312 5.312 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.237 0.763 36 H 0.174 0.826 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.140 0.860 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.961 10.933 16.956 24.535 hybrid contribution 0.315 0.339 0.287 0.544 sum -13.646 11.272 17.243 24.711 Atomic orbital electron populations 1.21811 0.98488 0.97665 1.00872 1.21948 0.92627 0.99899 1.02167 1.18846 0.93984 0.88991 0.80248 0.92690 1.21286 0.90782 1.38786 1.06250 0.92070 1.24854 0.98570 0.94811 0.95363 1.69904 1.34953 1.37765 1.09359 0.86403 0.84928 0.77740 0.78101 1.19756 1.20882 1.20900 1.45203 1.09931 1.56135 1.18871 1.19457 0.88015 0.86576 0.84142 1.68239 1.04789 1.24312 1.30591 1.22745 0.91506 0.87860 0.95871 1.22157 1.02941 1.12558 0.96739 1.19606 0.87967 0.88962 0.91867 1.18294 0.95239 1.04527 0.92874 1.20970 0.94910 0.93843 0.96548 1.20528 1.00333 1.08343 0.93580 1.17948 0.93319 0.91231 0.85501 1.46288 1.15944 1.60855 1.11828 1.21671 0.83975 0.97091 1.02339 1.21615 0.92966 1.01669 0.88564 1.20614 0.96175 1.06335 0.99498 1.21136 0.99054 0.93451 0.90677 1.67880 1.19617 1.18160 1.25515 0.96128 0.95036 0.92586 0.88189 0.95253 0.92666 0.76309 0.82616 0.85112 0.85422 0.85844 0.93411 0.91651 0.91168 0.92660 0.91013 0.92647 0.86002 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.43 37.16 0.31 -2.57 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.28 7.14 2.24 -69.08 -0.15 6.98 16 4 H 0.06 1.56 7.50 -51.93 -0.39 1.17 16 5 C -0.53 -14.33 8.73 -34.44 -0.30 -14.63 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.61 11.29 55.43 0.63 -23.98 16 9 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -15.18 5.15 -56.95 -0.29 -15.48 16 14 C 0.58 12.32 6.99 -322.92 -2.26 10.06 16 15 N -0.56 -11.49 6.35 -14.00 -0.09 -11.58 16 16 C 0.19 3.13 11.29 -17.28 -0.20 2.94 16 17 C -0.32 -4.78 9.52 -38.97 -0.37 -5.15 16 18 C 0.26 4.46 6.76 -82.62 -0.56 3.90 16 19 C -0.11 -1.53 5.88 -104.88 -0.62 -2.15 16 20 C -0.04 -0.50 9.43 -39.28 -0.37 -0.87 16 21 C -0.21 -2.13 9.19 -39.43 -0.36 -2.49 16 22 C 0.22 2.39 6.55 -83.80 -0.55 1.84 16 23 N -0.64 -5.32 3.40 -187.53 -0.64 -5.96 16 24 C 0.09 0.53 10.15 59.84 0.61 1.14 16 25 C 0.10 0.59 9.39 59.85 0.56 1.16 16 26 C -0.20 -2.37 9.29 -39.43 -0.37 -2.74 16 27 C -0.02 -0.32 9.58 -39.28 -0.38 -0.70 16 28 N -0.59 -11.50 9.61 -10.48 -0.10 -11.60 16 29 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 30 H 0.03 0.69 5.60 -51.93 -0.29 0.40 16 31 H 0.06 1.25 7.65 -51.93 -0.40 0.86 16 32 H 0.10 2.69 5.95 -51.92 -0.31 2.38 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.40 8.61 8.65 -40.82 -0.35 8.25 16 36 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.13 1.50 6.31 -52.49 -0.33 1.17 16 38 H 0.13 1.22 6.26 -52.48 -0.33 0.90 16 39 H 0.12 0.99 6.12 -52.49 -0.32 0.67 16 40 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.06 0.27 7.92 -51.93 -0.41 -0.14 16 42 H 0.07 0.38 6.18 -51.93 -0.32 0.06 16 43 H 0.05 0.35 7.94 -51.93 -0.41 -0.07 16 44 H 0.07 0.30 7.79 -51.93 -0.40 -0.10 16 45 H 0.05 0.35 7.94 -51.93 -0.41 -0.06 16 46 H 0.12 1.20 6.71 -52.49 -0.35 0.85 16 47 H 0.14 1.97 7.57 -52.49 -0.40 1.57 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -30.84 375.43 -11.76 -42.60 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.66 Total: 9.28 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -5.24 Total: -4.83 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -0.49 Total: -68.59 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.84 -11.76 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.744 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds