Wall clock time and date at job start Tue Mar 31 2020 15:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 H 1.09001 * 109.47398 * 305.00273 * 3 2 1 5 5 C 1.50694 * 109.47433 * 185.00122 * 3 2 1 6 6 H 1.08006 * 120.00185 * 240.00404 * 5 3 2 7 7 C 1.37878 * 120.00104 * 60.00250 * 5 3 2 8 8 N 1.31514 * 119.99757 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00126 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46922 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47223 * 119.99654 * 9 7 5 12 12 H 1.48499 * 109.46754 * 239.99980 * 9 7 5 13 13 N 1.46502 * 109.46972 * 64.99824 * 3 2 1 14 14 C 1.38413 * 120.00136 * 275.00213 * 13 3 2 15 15 N 1.32534 * 119.15345 * 359.97438 * 14 13 3 16 16 C 1.32388 * 120.99106 * 180.02562 * 15 14 13 17 17 C 1.38314 * 119.29337 * 0.02562 * 16 15 14 18 18 C 1.39795 * 118.44876 * 359.97438 * 17 16 15 19 19 C 1.48163 * 120.51677 * 179.97438 * 18 17 16 20 20 C 1.39508 * 120.04417 * 0.30145 * 19 18 17 21 21 C 1.37779 * 119.94709 * 180.23150 * 20 19 18 22 22 C 1.39090 * 120.05108 * 359.46868 * 21 20 19 23 23 N 1.39375 * 119.95078 * 180.25612 * 22 21 20 24 24 C 1.46493 * 120.00355 * 0.02562 * 23 22 21 25 25 C 1.46503 * 119.99646 * 179.97438 * 23 22 21 26 26 C 1.39091 * 120.09456 * 0.27761 * 22 21 20 27 27 C 1.37774 * 120.05160 * 359.97438 * 26 22 21 28 28 N 1.32354 * 119.14840 * 180.29288 * 14 13 3 29 29 H 1.09010 * 109.46825 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47275 * 299.99619 * 1 2 3 31 31 H 1.09001 * 109.47112 * 60.00162 * 1 2 3 32 32 H 1.09007 * 109.47394 * 240.00325 * 2 1 3 33 33 H 1.08998 * 109.47541 * 120.00463 * 2 1 3 34 34 H 0.97008 * 119.99625 * 180.02562 * 8 7 5 35 35 H 0.97007 * 119.99619 * 94.99716 * 13 3 2 36 36 H 1.07999 * 120.35429 * 179.97438 * 16 15 14 37 37 H 1.07997 * 120.77352 * 179.97438 * 17 16 15 38 38 H 1.08004 * 120.03043 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.97869 * 179.75100 * 21 20 19 40 40 H 1.09005 * 109.47657 * 89.99564 * 24 23 22 41 41 H 1.09001 * 109.47492 * 210.00241 * 24 23 22 42 42 H 1.09001 * 109.47186 * 329.99778 * 24 23 22 43 43 H 1.09005 * 109.46853 * 60.00719 * 25 23 22 44 44 H 1.09005 * 109.46878 * 179.97438 * 25 23 22 45 45 H 1.08997 * 109.47906 * 300.00177 * 25 23 22 46 46 H 1.07998 * 119.97006 * 179.97438 * 26 22 21 47 47 H 1.07998 * 120.02265 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4061 0.3368 -2.1729 9 14 6.0050 0.8803 -1.3812 10 1 6.5987 1.5455 -0.1937 11 1 6.4962 -0.5186 -1.4628 12 1 6.3998 1.6161 -2.6092 13 7 1.6523 2.0975 1.2518 14 6 0.4022 2.6796 1.3701 15 7 -0.4308 2.6352 0.3401 16 6 -1.6349 3.1805 0.4132 17 6 -2.0249 3.8055 1.5839 18 6 -1.1254 3.8368 2.6536 19 6 -1.4953 4.4946 3.9286 20 6 -2.7518 5.0837 4.0718 21 6 -3.0920 5.6990 5.2567 22 6 -2.1879 5.7234 6.3135 23 7 -2.5362 6.3417 7.5130 24 6 -3.8538 6.9648 7.6604 25 6 -1.5850 6.3676 8.6269 26 6 -0.9367 5.1320 6.1747 27 6 -0.5903 4.5202 4.9898 28 7 0.0717 3.2719 2.5066 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0616 -2.9496 35 1 2.2719 2.1231 1.9978 36 1 -2.3052 3.1387 -0.4325 37 1 -3.0014 4.2586 1.6696 38 1 -3.4561 5.0604 3.2533 39 1 -4.0630 6.1588 5.3667 40 1 -4.5622 6.2306 8.0442 41 1 -3.7845 7.8012 8.3560 42 1 -4.1953 7.3265 6.6904 43 1 -0.6772 6.8856 8.3175 44 1 -2.0307 6.8904 9.4732 45 1 -1.3392 5.3465 8.9187 46 1 -0.2361 5.1525 6.9964 47 1 0.3815 4.0615 4.8824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:55 Heat of formation + Delta-G solvation = 80.727112 kcal Electronic energy + Delta-G solvation = -26685.816787 eV Core-core repulsion = 23061.494408 eV Total energy + Delta-G solvation = -3624.322379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76360 -40.41715 -38.11593 -37.14792 -34.76725 -34.47882 -33.12084 -32.21941 -31.45131 -30.19098 -29.00643 -28.52180 -26.43506 -25.09789 -24.54885 -23.81095 -22.75726 -21.87813 -21.12516 -19.40825 -18.65636 -17.91499 -17.76319 -16.79475 -16.44528 -16.36985 -16.25419 -16.14938 -15.92442 -15.42706 -15.02856 -14.69796 -14.56582 -14.45299 -14.38237 -14.15609 -13.60781 -13.44166 -13.42316 -13.17926 -13.05672 -12.85384 -12.78367 -12.71463 -12.66379 -12.23628 -12.08684 -11.88078 -11.83338 -11.51662 -11.39349 -11.23796 -10.92490 -10.54772 -10.31949 -9.87010 -9.79445 -8.71242 -8.16096 -8.10205 -6.31662 -0.16079 0.52452 0.57090 1.13707 1.41816 1.42998 1.54778 2.23330 2.24722 2.48027 2.87399 3.12618 3.35786 3.37284 3.75072 3.91641 4.06168 4.08344 4.21183 4.44271 4.45990 4.50041 4.54027 4.55998 4.60814 4.64939 4.69887 4.75965 4.80830 4.83311 4.90413 4.91550 4.98257 5.12894 5.19313 5.30082 5.32789 5.38090 5.49618 5.56906 5.62436 5.69650 5.84602 5.86612 5.88000 6.10923 6.27302 6.33810 6.46324 6.51292 6.79084 6.96277 7.36284 7.71405 8.89185 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020857 B = 0.002435 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.137841 B =11495.685295 C =12435.349316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C 0.297 3.703 4 H 0.018 0.982 5 C -0.552 4.552 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.908 5.908 9 Si 0.967 3.033 10 H -0.269 1.269 11 H -0.276 1.276 12 H -0.280 1.280 13 N -0.685 5.685 14 C 0.558 3.442 15 N -0.591 5.591 16 C 0.177 3.823 17 C -0.297 4.297 18 C 0.249 3.751 19 C -0.138 4.138 20 C -0.035 4.035 21 C -0.205 4.205 22 C 0.226 3.774 23 N -0.637 5.637 24 C 0.084 3.916 25 C 0.088 3.912 26 C -0.213 4.213 27 C -0.038 4.038 28 N -0.604 5.604 29 H 0.037 0.963 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.192 0.808 37 H 0.175 0.825 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.053 0.947 46 H 0.133 0.867 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.389 13.237 19.052 28.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.036 0.964 5 C -0.590 4.590 6 H 0.077 0.923 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.202 1.202 12 H -0.205 1.205 13 N -0.318 5.318 14 C 0.201 3.799 15 N -0.315 5.315 16 C 0.010 3.990 17 C -0.323 4.323 18 C 0.103 3.897 19 C -0.142 4.142 20 C -0.054 4.054 21 C -0.227 4.227 22 C 0.121 3.879 23 N -0.347 5.347 24 C -0.058 4.058 25 C -0.055 4.055 26 C -0.235 4.235 27 C -0.058 4.058 28 N -0.329 5.329 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.209 0.791 37 H 0.192 0.808 38 H 0.169 0.831 39 H 0.171 0.829 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.115 0.885 45 H 0.072 0.928 46 H 0.150 0.850 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.414 12.708 18.777 27.991 hybrid contribution 0.849 -0.013 -0.047 0.850 sum -15.565 12.695 18.730 27.463 Atomic orbital electron populations 1.21602 0.96462 0.98526 1.00384 1.21790 0.94373 0.99207 1.00541 1.18371 0.92974 0.88917 0.80346 0.96436 1.21588 0.91891 1.39035 1.06532 0.92326 1.25656 1.03021 0.94337 0.94951 1.70026 1.36704 1.38178 1.09751 0.85381 0.79494 0.77910 0.78035 1.19339 1.20175 1.20541 1.44849 1.11112 1.57859 1.17953 1.19496 0.87818 0.87453 0.85137 1.68209 1.06406 1.26002 1.30876 1.23431 0.90636 0.87215 0.97678 1.22599 1.04043 1.10517 0.95168 1.20238 0.87358 0.88425 0.93637 1.18340 0.96955 1.06834 0.92035 1.21199 0.93852 0.92648 0.97740 1.20850 1.01366 1.07721 0.92784 1.18146 0.92824 0.90316 0.86658 1.46618 1.17162 1.59662 1.11245 1.21903 0.82662 0.97849 1.03360 1.21785 0.92962 1.01991 0.88759 1.20691 0.97247 1.06540 0.99043 1.21067 0.98484 0.94404 0.91870 1.67872 1.21376 1.18706 1.24927 0.94392 0.95183 0.93311 0.90616 0.95742 0.92479 0.76324 0.79122 0.80795 0.83063 0.82913 0.92617 0.89651 0.90567 0.92782 0.88497 0.92823 0.84963 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.05 8.43 71.98 0.61 -4.45 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.96 16 3 C 0.30 15.87 2.24 44.24 0.10 15.97 16 4 H 0.02 1.07 7.50 -2.39 -0.02 1.05 16 5 C -0.55 -30.90 8.73 25.60 0.22 -30.68 16 6 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -52.17 11.29 21.45 0.24 -51.93 16 9 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.69 -32.79 5.15 -334.08 -1.72 -34.51 16 14 C 0.56 24.89 6.99 261.53 1.83 26.72 16 15 N -0.59 -24.98 6.35 -198.21 -1.26 -26.24 16 16 C 0.18 5.67 11.29 84.63 0.96 6.63 16 17 C -0.30 -8.40 9.52 22.66 0.22 -8.19 16 18 C 0.25 8.37 6.76 41.95 0.28 8.66 16 19 C -0.14 -3.88 5.88 -20.03 -0.12 -4.00 16 20 C -0.03 -0.71 9.43 22.47 0.21 -0.50 16 21 C -0.21 -3.57 9.19 22.37 0.21 -3.36 16 22 C 0.23 4.30 6.55 38.35 0.25 4.55 16 23 N -0.64 -8.65 3.40 -747.22 -2.54 -11.19 16 24 C 0.08 0.63 10.15 127.77 1.30 1.93 16 25 C 0.09 0.87 9.39 127.77 1.20 2.07 16 26 C -0.21 -4.80 9.29 22.36 0.21 -4.59 16 27 C -0.04 -1.08 9.58 22.46 0.22 -0.86 16 28 N -0.60 -24.53 9.61 -187.06 -1.80 -26.33 16 29 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.03 1.34 5.60 -2.39 -0.01 1.33 16 31 H 0.05 2.23 7.65 -2.39 -0.02 2.21 16 32 H 0.08 4.24 5.95 -2.38 -0.01 4.23 16 33 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 35 H 0.40 18.43 8.65 -92.70 -0.80 17.63 16 36 H 0.19 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.17 3.27 6.31 -2.91 -0.02 3.25 16 38 H 0.15 2.25 6.26 -2.91 -0.02 2.23 16 39 H 0.15 1.73 6.12 -2.91 -0.02 1.71 16 40 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 41 H 0.08 0.33 7.92 -2.39 -0.02 0.32 16 42 H 0.08 0.50 6.18 -2.39 -0.01 0.48 16 43 H 0.05 0.57 7.94 -2.38 -0.02 0.55 16 44 H 0.10 0.48 7.79 -2.38 -0.02 0.46 16 45 H 0.05 0.57 7.94 -2.39 -0.02 0.55 16 46 H 0.13 2.56 6.71 -2.91 -0.02 2.54 16 47 H 0.11 3.58 7.57 -2.91 -0.02 3.56 16 Total: -1.00 -70.22 375.43 3.44 -66.78 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.19 Total: 32.14 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 8.30 Total: 5.54 kcal Atomic # 7 Polarization: -143.11 SS G_CDS: -7.08 Total: -150.19 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -70.22 3.44 -66.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.509 kcal (2) G-P(sol) polarization free energy of solvation -70.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds