Wall clock time and date at job start Tue Mar 31 2020 15:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46772 * 2 1 4 4 H 1.08996 * 109.47252 * 304.59041 * 3 2 1 5 5 C 1.50698 * 109.46787 * 184.58945 * 3 2 1 6 6 H 1.08006 * 120.00502 * 240.00043 * 5 3 2 7 7 C 1.37875 * 120.00155 * 60.00022 * 5 3 2 8 8 N 1.31518 * 120.00017 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00332 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46894 * 60.00079 * 9 7 5 11 11 H 1.48493 * 109.47457 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47208 * 300.00812 * 9 7 5 13 13 N 1.46501 * 109.46828 * 64.59275 * 3 2 1 14 14 C 1.38627 * 120.00022 * 259.02165 * 13 3 2 15 15 C 1.39183 * 120.48267 * 359.92429 * 14 13 3 16 16 C 1.39134 * 118.26457 * 180.25889 * 15 14 13 17 17 N 1.38738 * 120.48206 * 179.76060 * 16 15 14 18 18 C 1.46504 * 119.99754 * 275.10468 * 17 16 15 19 19 C 1.52999 * 109.47165 * 270.00503 * 18 17 16 20 20 C 1.39785 * 120.00268 * 95.11030 * 17 16 15 21 21 C 1.38912 * 120.06968 * 354.61875 * 20 17 16 22 22 C 1.38095 * 119.92317 * 180.02562 * 21 20 17 23 23 C 1.38294 * 120.07750 * 0.02562 * 22 21 20 24 24 C 1.38293 * 120.14363 * 0.25087 * 23 22 21 25 25 C 1.38103 * 120.07088 * 359.49192 * 24 23 22 26 26 N 1.33204 * 119.02669 * 359.48924 * 16 15 14 27 27 C 1.31718 * 120.88521 * 0.27378 * 26 16 15 28 28 N 1.31762 * 121.91423 * 359.97438 * 27 26 16 29 29 H 1.09003 * 109.46800 * 183.16317 * 1 2 3 30 30 H 1.09004 * 109.46999 * 303.15757 * 1 2 3 31 31 H 1.08996 * 109.47230 * 63.16278 * 1 2 3 32 32 H 1.08995 * 109.47199 * 239.99900 * 2 1 3 33 33 H 1.09001 * 109.46956 * 120.00175 * 2 1 3 34 34 H 0.96998 * 120.00412 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00358 * 79.03329 * 13 3 2 36 36 H 1.07997 * 120.86848 * 0.04214 * 15 14 13 37 37 H 1.09000 * 109.47331 * 30.00434 * 18 17 16 38 38 H 1.09001 * 109.47039 * 150.00297 * 18 17 16 39 39 H 1.09009 * 109.47142 * 299.99978 * 19 18 17 40 40 H 1.09001 * 109.47310 * 59.99960 * 19 18 17 41 41 H 1.08997 * 109.47366 * 180.02562 * 19 18 17 42 42 H 1.07997 * 120.03791 * 0.02562 * 21 20 17 43 43 H 1.08000 * 119.96666 * 179.97438 * 22 21 20 44 44 H 1.07994 * 119.92840 * 179.97438 * 23 22 21 45 45 H 1.08000 * 119.95914 * 179.72682 * 24 23 22 46 46 H 1.08004 * 120.03607 * 180.23128 * 25 24 23 47 47 H 1.07994 * 119.04238 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6110 1.9795 -0.8460 5 6 3.5426 1.4441 -0.1137 6 1 4.1428 1.8905 0.6654 7 6 4.1515 0.8756 -1.2123 8 7 3.4208 0.3324 -2.1614 9 14 6.0141 0.8781 -1.3537 10 1 6.5989 0.1468 -0.2010 11 1 6.4155 0.2116 -2.6185 12 1 6.5087 2.2783 -1.3539 13 7 1.6439 2.1004 1.2477 14 6 0.5555 2.9588 1.2635 15 6 -0.1672 3.2041 0.0996 16 6 -1.2479 4.0778 0.1668 17 7 -1.9971 4.3592 -0.9665 18 6 -1.5601 5.4076 -1.8918 19 6 -2.1683 6.7465 -1.4694 20 6 -3.1689 3.6424 -1.2254 21 6 -3.5260 2.5747 -0.4117 22 6 -4.6840 1.8683 -0.6706 23 6 -5.4876 2.2224 -1.7389 24 6 -5.1320 3.2812 -2.5544 25 6 -3.9780 3.9951 -2.2979 26 7 -1.5559 4.6360 1.3364 27 6 -0.8500 4.3744 2.4172 28 7 0.1830 3.5568 2.3935 29 1 -0.3633 -1.0261 0.0567 30 1 -0.3633 0.5621 0.8604 31 1 -0.3633 0.4639 -0.9169 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8491 -0.0680 -2.9342 35 1 2.1434 1.9355 2.0627 36 1 0.1059 2.7313 -0.8322 37 1 -0.4727 5.4800 -1.8715 38 1 -1.8891 5.1614 -2.9013 39 1 -3.2558 6.6741 -1.4896 40 1 -1.8393 6.9927 -0.4598 41 1 -1.8436 7.5265 -2.1580 42 1 -2.8986 2.2974 0.4226 43 1 -4.9620 1.0379 -0.0386 44 1 -6.3925 1.6681 -1.9395 45 1 -5.7595 3.5524 -3.3906 46 1 -3.7028 4.8242 -2.9329 47 1 -1.1263 4.8431 3.3501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:49 Heat of formation + Delta-G solvation = 86.923958 kcal Electronic energy + Delta-G solvation = -28105.596988 eV Core-core repulsion = 24481.543324 eV Total energy + Delta-G solvation = -3624.053663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74831 -39.28297 -36.96715 -36.33338 -33.45111 -32.39053 -31.53913 -30.96395 -30.53592 -29.95834 -28.17692 -26.87992 -24.30005 -23.67021 -23.09926 -22.72338 -21.83804 -20.55479 -19.98770 -18.17444 -17.69162 -16.89200 -16.34243 -15.68060 -15.44385 -14.85181 -14.73526 -14.64003 -14.41738 -14.22374 -13.94273 -13.72621 -13.49353 -13.37152 -13.07341 -13.01049 -12.75144 -12.44592 -12.04405 -11.87037 -11.45231 -11.34952 -11.24687 -11.09140 -11.00409 -10.86283 -10.73404 -10.54958 -10.28589 -10.12028 -9.95299 -9.80573 -9.40056 -9.17355 -8.83015 -8.80767 -8.59599 -7.35279 -7.32034 -6.27539 -4.37227 1.39651 1.54912 1.69474 1.87661 2.92342 3.18003 3.23542 3.25344 3.82918 4.00457 4.25333 4.31574 4.69551 4.83067 5.02935 5.03710 5.08579 5.12708 5.23399 5.28713 5.39741 5.43470 5.55896 5.63803 5.69817 5.81626 5.90659 5.91751 6.03163 6.08930 6.10823 6.18094 6.22494 6.32249 6.38284 6.54958 6.60181 6.72071 6.74536 6.80860 6.95879 7.03611 7.19561 7.35388 7.43357 7.53740 7.61847 7.70395 7.93318 8.09648 8.41135 8.63712 8.81873 9.30613 10.77201 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.003724 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.585542 B = 7516.105060 C = 7885.708670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.902 3.098 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.678 5.678 14 C 0.452 3.548 15 C -0.278 4.278 16 C 0.418 3.582 17 N -0.573 5.573 18 C 0.125 3.875 19 C -0.170 4.170 20 C 0.226 3.774 21 C -0.174 4.174 22 C -0.076 4.076 23 C -0.177 4.177 24 C -0.079 4.079 25 C -0.190 4.190 26 N -0.585 5.585 27 C 0.342 3.658 28 N -0.595 5.595 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.038 0.962 34 H 0.267 0.733 35 H 0.399 0.601 36 H 0.147 0.853 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.078 6.281 0.173 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.730 3.270 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.303 5.303 14 C 0.204 3.796 15 C -0.310 4.310 16 C 0.190 3.810 17 N -0.282 5.282 18 C 0.003 3.997 19 C -0.228 4.228 20 C 0.127 3.873 21 C -0.196 4.196 22 C -0.094 4.094 23 C -0.197 4.197 24 C -0.098 4.098 25 C -0.212 4.212 26 N -0.309 5.309 27 C 0.050 3.950 28 N -0.322 5.322 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.234 0.766 36 H 0.165 0.835 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.141 0.859 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.051 6.557 0.576 14.617 hybrid contribution 1.475 -0.467 -0.467 1.616 sum -11.576 6.090 0.109 13.081 Atomic orbital electron populations 1.21824 0.98776 0.99438 1.00109 1.22005 0.92210 0.99730 1.03114 1.19019 0.94854 0.89067 0.80232 0.93215 1.21210 0.90446 1.39134 1.06677 0.91905 1.24865 0.98848 0.94504 0.95209 1.69841 1.35485 1.37358 1.09459 0.86481 0.84549 0.78443 0.77559 1.20038 1.21024 1.20128 1.45491 1.26763 1.43519 1.14535 1.18640 0.86581 0.86224 0.88114 1.22392 1.01058 1.06570 1.00931 1.17725 0.88151 0.89473 0.85701 1.43493 1.23834 1.39052 1.21831 1.21483 0.99774 0.86150 0.92321 1.22219 1.01634 0.96671 1.02309 1.17730 0.85232 0.90536 0.93832 1.20663 0.99474 0.97585 1.01915 1.20860 0.93573 0.98232 0.96762 1.20881 1.01157 0.99987 0.97686 1.20832 0.95627 0.94875 0.98418 1.20644 0.96845 1.03753 0.99941 1.68117 1.33940 1.29304 0.99511 1.24269 0.85482 0.89571 0.95643 1.68009 1.20228 1.15544 1.28407 0.94575 0.94666 0.93658 0.87689 0.94311 0.92308 0.76617 0.83546 0.90475 0.89948 0.92235 0.91932 0.91924 0.86761 0.86386 0.86655 0.86317 0.85950 0.79590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.88 37.16 0.33 -2.46 16 2 C -0.13 -2.88 5.45 -26.73 -0.15 -3.03 16 3 C 0.27 6.13 2.14 -69.08 -0.15 5.98 16 4 H 0.05 1.23 5.69 -51.93 -0.30 0.93 16 5 C -0.54 -13.42 8.79 -34.44 -0.30 -13.72 16 6 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.04 11.30 55.43 0.63 -22.42 16 9 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.68 -13.66 4.75 -54.96 -0.26 -13.92 16 14 C 0.45 8.69 6.63 -154.71 -1.03 7.66 16 15 C -0.28 -5.21 8.23 -38.90 -0.32 -5.53 16 16 C 0.42 7.19 4.55 -154.59 -0.70 6.49 16 17 N -0.57 -8.76 2.71 -113.48 -0.31 -9.07 16 18 C 0.12 1.58 5.75 -4.04 -0.02 1.55 16 19 C -0.17 -1.90 10.21 37.16 0.38 -1.52 16 20 C 0.23 3.40 6.51 -83.74 -0.55 2.86 16 21 C -0.17 -2.70 9.31 -39.38 -0.37 -3.06 16 22 C -0.08 -1.00 10.04 -39.61 -0.40 -1.40 16 23 C -0.18 -2.11 10.04 -39.54 -0.40 -2.50 16 24 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 25 C -0.19 -2.42 9.12 -39.39 -0.36 -2.78 16 26 N -0.59 -9.89 10.47 -13.86 -0.15 -10.03 16 27 C 0.34 5.45 12.28 -92.25 -1.13 4.32 16 28 N -0.60 -10.69 10.47 -13.88 -0.15 -10.83 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.03 0.67 6.54 -51.93 -0.34 0.33 16 31 H 0.04 0.89 7.84 -51.93 -0.41 0.48 16 32 H 0.11 2.57 5.96 -51.93 -0.31 2.26 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.40 7.74 8.88 -40.82 -0.36 7.38 16 36 H 0.15 2.96 5.62 -52.49 -0.29 2.66 16 37 H 0.08 1.01 8.05 -51.93 -0.42 0.60 16 38 H 0.08 0.89 6.44 -51.93 -0.33 0.56 16 39 H 0.06 0.67 8.06 -51.92 -0.42 0.25 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.11 1.95 7.01 -52.49 -0.37 1.58 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 46 H 0.12 1.33 6.23 -52.48 -0.33 1.01 16 47 H 0.19 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -26.90 381.05 -11.96 -38.86 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -6.80 Total: 13.60 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -5.65 Total: -6.81 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -0.23 Total: -66.27 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -26.90 -11.96 -38.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.788 kcal (2) G-P(sol) polarization free energy of solvation -26.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds