Wall clock time and date at job start Tue Mar 31 2020 15:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46772 * 2 1 4 4 H 1.08996 * 109.47252 * 304.59041 * 3 2 1 5 5 C 1.50698 * 109.46787 * 184.58945 * 3 2 1 6 6 H 1.08006 * 120.00502 * 240.00043 * 5 3 2 7 7 C 1.37875 * 120.00155 * 60.00022 * 5 3 2 8 8 N 1.31518 * 120.00017 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00332 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46894 * 60.00079 * 9 7 5 11 11 H 1.48493 * 109.47457 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47208 * 300.00812 * 9 7 5 13 13 N 1.46501 * 109.46828 * 64.59275 * 3 2 1 14 14 C 1.38627 * 120.00022 * 259.02165 * 13 3 2 15 15 C 1.39183 * 120.48267 * 359.92429 * 14 13 3 16 16 C 1.39134 * 118.26457 * 180.25889 * 15 14 13 17 17 N 1.38738 * 120.48206 * 179.76060 * 16 15 14 18 18 C 1.46504 * 119.99754 * 275.10468 * 17 16 15 19 19 C 1.52999 * 109.47165 * 270.00503 * 18 17 16 20 20 C 1.39785 * 120.00268 * 95.11030 * 17 16 15 21 21 C 1.38912 * 120.06968 * 354.61875 * 20 17 16 22 22 C 1.38095 * 119.92317 * 180.02562 * 21 20 17 23 23 C 1.38294 * 120.07750 * 0.02562 * 22 21 20 24 24 C 1.38293 * 120.14363 * 0.25087 * 23 22 21 25 25 C 1.38103 * 120.07088 * 359.49192 * 24 23 22 26 26 N 1.33204 * 119.02669 * 359.48924 * 16 15 14 27 27 C 1.31718 * 120.88521 * 0.27378 * 26 16 15 28 28 N 1.31762 * 121.91423 * 359.97438 * 27 26 16 29 29 H 1.09003 * 109.46800 * 183.16317 * 1 2 3 30 30 H 1.09004 * 109.46999 * 303.15757 * 1 2 3 31 31 H 1.08996 * 109.47230 * 63.16278 * 1 2 3 32 32 H 1.08995 * 109.47199 * 239.99900 * 2 1 3 33 33 H 1.09001 * 109.46956 * 120.00175 * 2 1 3 34 34 H 0.96998 * 120.00412 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00358 * 79.03329 * 13 3 2 36 36 H 1.07997 * 120.86848 * 0.04214 * 15 14 13 37 37 H 1.09000 * 109.47331 * 30.00434 * 18 17 16 38 38 H 1.09001 * 109.47039 * 150.00297 * 18 17 16 39 39 H 1.09009 * 109.47142 * 299.99978 * 19 18 17 40 40 H 1.09001 * 109.47310 * 59.99960 * 19 18 17 41 41 H 1.08997 * 109.47366 * 180.02562 * 19 18 17 42 42 H 1.07997 * 120.03791 * 0.02562 * 21 20 17 43 43 H 1.08000 * 119.96666 * 179.97438 * 22 21 20 44 44 H 1.07994 * 119.92840 * 179.97438 * 23 22 21 45 45 H 1.08000 * 119.95914 * 179.72682 * 24 23 22 46 46 H 1.08004 * 120.03607 * 180.23128 * 25 24 23 47 47 H 1.07994 * 119.04238 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6110 1.9795 -0.8460 5 6 3.5426 1.4441 -0.1137 6 1 4.1428 1.8905 0.6654 7 6 4.1515 0.8756 -1.2123 8 7 3.4208 0.3324 -2.1614 9 14 6.0141 0.8781 -1.3537 10 1 6.5989 0.1468 -0.2010 11 1 6.4155 0.2116 -2.6185 12 1 6.5087 2.2783 -1.3539 13 7 1.6439 2.1004 1.2477 14 6 0.5555 2.9588 1.2635 15 6 -0.1672 3.2041 0.0996 16 6 -1.2479 4.0778 0.1668 17 7 -1.9971 4.3592 -0.9665 18 6 -1.5601 5.4076 -1.8918 19 6 -2.1683 6.7465 -1.4694 20 6 -3.1689 3.6424 -1.2254 21 6 -3.5260 2.5747 -0.4117 22 6 -4.6840 1.8683 -0.6706 23 6 -5.4876 2.2224 -1.7389 24 6 -5.1320 3.2812 -2.5544 25 6 -3.9780 3.9951 -2.2979 26 7 -1.5559 4.6360 1.3364 27 6 -0.8500 4.3744 2.4172 28 7 0.1830 3.5568 2.3935 29 1 -0.3633 -1.0261 0.0567 30 1 -0.3633 0.5621 0.8604 31 1 -0.3633 0.4639 -0.9169 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8491 -0.0680 -2.9342 35 1 2.1434 1.9355 2.0627 36 1 0.1059 2.7313 -0.8322 37 1 -0.4727 5.4800 -1.8715 38 1 -1.8891 5.1614 -2.9013 39 1 -3.2558 6.6741 -1.4896 40 1 -1.8393 6.9927 -0.4598 41 1 -1.8436 7.5265 -2.1580 42 1 -2.8986 2.2974 0.4226 43 1 -4.9620 1.0379 -0.0386 44 1 -6.3925 1.6681 -1.9395 45 1 -5.7595 3.5524 -3.3906 46 1 -3.7028 4.8242 -2.9329 47 1 -1.1263 4.8431 3.3501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161055229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:49 Heat of formation + Delta-G solvation = 75.931938 kcal Electronic energy + Delta-G solvation = -28106.073637 eV Core-core repulsion = 24481.543324 eV Total energy + Delta-G solvation = -3624.530313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.09160 -40.40395 -38.46641 -37.57339 -35.11171 -33.84671 -33.01364 -32.19868 -31.57544 -31.39635 -29.34850 -28.64240 -25.65840 -25.18845 -24.32360 -24.04715 -22.94338 -21.82378 -21.60035 -19.55355 -19.06370 -18.15791 -18.01517 -17.04638 -16.66370 -16.53936 -16.09284 -15.93131 -15.69932 -15.46048 -15.37387 -14.92847 -14.73629 -14.60967 -14.47748 -14.36422 -14.00175 -13.62696 -13.41723 -13.23294 -12.99436 -12.94832 -12.73719 -12.43064 -12.29978 -12.17117 -12.06262 -11.90983 -11.82868 -11.80560 -11.52945 -11.15170 -10.98135 -10.75441 -10.50589 -10.20672 -9.81638 -8.90513 -8.44346 -8.20512 -6.36968 0.02631 0.43013 0.54348 0.68135 1.42331 1.42988 1.50549 1.77604 2.23618 2.46720 2.91581 2.99046 3.08259 3.49541 3.60304 3.87886 4.02611 4.05091 4.12388 4.26233 4.32416 4.35898 4.44265 4.47426 4.51110 4.58701 4.62614 4.64930 4.66752 4.74770 4.88248 4.93930 4.95362 5.10403 5.14134 5.22462 5.27970 5.31236 5.40541 5.50037 5.59948 5.61432 5.73640 5.74258 5.88579 5.98664 6.09556 6.30372 6.45419 6.52734 6.68122 6.88395 7.30549 7.39793 8.82690 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.003724 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.585542 B = 7516.105060 C = 7885.708670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C 0.282 3.718 4 H 0.026 0.974 5 C -0.553 4.553 6 H 0.059 0.941 7 C 0.028 3.972 8 N -0.907 5.907 9 Si 0.960 3.040 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.275 1.275 13 N -0.683 5.683 14 C 0.443 3.557 15 C -0.294 4.294 16 C 0.432 3.568 17 N -0.582 5.582 18 C 0.119 3.881 19 C -0.158 4.158 20 C 0.203 3.797 21 C -0.201 4.201 22 C -0.085 4.085 23 C -0.175 4.175 24 C -0.075 4.075 25 C -0.191 4.191 26 N -0.588 5.588 27 C 0.344 3.656 28 N -0.602 5.602 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.267 0.733 35 H 0.401 0.599 36 H 0.126 0.874 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.131 0.869 44 H 0.144 0.856 45 H 0.153 0.847 46 H 0.142 0.858 47 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.716 7.146 -0.313 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.179 3.821 4 H 0.043 0.957 5 C -0.592 4.592 6 H 0.077 0.923 7 C -0.174 4.174 8 N -0.545 5.545 9 Si 0.786 3.214 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.201 1.201 13 N -0.309 5.309 14 C 0.197 3.803 15 C -0.325 4.325 16 C 0.201 3.799 17 N -0.292 5.292 18 C -0.002 4.002 19 C -0.216 4.216 20 C 0.105 3.895 21 C -0.223 4.223 22 C -0.103 4.103 23 C -0.195 4.195 24 C -0.094 4.094 25 C -0.213 4.213 26 N -0.311 5.311 27 C 0.053 3.947 28 N -0.328 5.328 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.237 0.763 36 H 0.144 0.856 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.148 0.852 44 H 0.162 0.838 45 H 0.171 0.829 46 H 0.160 0.840 47 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -14.718 7.441 0.105 16.492 hybrid contribution 1.840 -0.688 -0.325 1.991 sum -12.877 6.753 -0.220 14.542 Atomic orbital electron populations 1.21630 0.96870 1.00354 0.99558 1.21835 0.93774 0.98961 1.01715 1.18659 0.93642 0.89264 0.80525 0.95673 1.21517 0.91780 1.39127 1.06755 0.92269 1.25561 1.02639 0.94211 0.94941 1.69957 1.36872 1.37863 1.09784 0.85572 0.79956 0.78283 0.77605 1.19518 1.20672 1.20083 1.45187 1.27645 1.44406 1.13692 1.18722 0.86412 0.86318 0.88803 1.22266 1.02382 1.07846 1.00029 1.17842 0.87360 0.88134 0.86515 1.43660 1.24024 1.39903 1.21604 1.21675 0.99264 0.86367 0.92900 1.22114 1.01570 0.96344 1.01596 1.17988 0.85672 0.90883 0.94969 1.20635 1.00515 0.99062 1.02075 1.21097 0.93110 0.98437 0.97671 1.21260 1.01581 0.99959 0.96655 1.21280 0.95226 0.93977 0.98896 1.20939 0.96802 1.04338 0.99191 1.68266 1.33969 1.29250 0.99654 1.25118 0.84312 0.88463 0.96785 1.68067 1.21043 1.15997 1.27732 0.92807 0.94768 0.94550 0.90141 0.94395 0.92332 0.76344 0.85632 0.91728 0.87946 0.91944 0.94043 0.89458 0.89461 0.85154 0.83850 0.82923 0.84031 0.75610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 8.88 71.98 0.64 -4.40 16 2 C -0.12 -5.60 5.45 30.60 0.17 -5.44 16 3 C 0.28 13.34 2.14 44.25 0.09 13.43 16 4 H 0.03 1.33 5.69 -2.39 -0.01 1.31 16 5 C -0.55 -28.44 8.79 25.60 0.23 -28.22 16 6 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.03 1.42 5.29 84.65 0.45 1.87 16 8 N -0.91 -48.42 11.30 21.45 0.24 -48.18 16 9 Si 0.96 41.13 29.54 68.60 2.03 43.16 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 13 N -0.68 -28.52 4.75 -327.81 -1.56 -30.07 16 14 C 0.44 17.58 6.63 132.97 0.88 18.47 16 15 C -0.29 -11.52 8.23 22.71 0.19 -11.34 16 16 C 0.43 15.19 4.55 132.91 0.61 15.80 16 17 N -0.58 -17.90 2.71 -512.95 -1.39 -19.29 16 18 C 0.12 2.95 5.75 86.38 0.50 3.45 16 19 C -0.16 -3.31 10.21 71.98 0.73 -2.58 16 20 C 0.20 6.05 6.51 38.19 0.25 6.30 16 21 C -0.20 -6.28 9.31 22.40 0.21 -6.07 16 22 C -0.08 -2.17 10.04 22.25 0.22 -1.94 16 23 C -0.17 -3.68 10.04 22.30 0.22 -3.46 16 24 C -0.08 -1.50 10.04 22.25 0.22 -1.28 16 25 C -0.19 -4.48 9.12 22.40 0.20 -4.28 16 26 N -0.59 -19.80 10.47 -197.75 -2.07 -21.87 16 27 C 0.34 10.69 12.28 180.92 2.22 12.91 16 28 N -0.60 -21.64 10.47 -197.83 -2.07 -23.71 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.03 1.34 6.54 -2.39 -0.02 1.33 16 31 H 0.04 1.48 7.84 -2.39 -0.02 1.46 16 32 H 0.08 4.08 5.96 -2.39 -0.01 4.06 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 35 H 0.40 16.04 8.88 -92.71 -0.82 15.22 16 36 H 0.13 5.45 5.62 -2.91 -0.02 5.43 16 37 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16 38 H 0.10 2.08 6.44 -2.39 -0.02 2.06 16 39 H 0.06 1.27 8.06 -2.38 -0.02 1.25 16 40 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 42 H 0.09 3.13 7.01 -2.91 -0.02 3.11 16 43 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 44 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 45 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 46 H 0.14 2.68 6.23 -2.91 -0.02 2.66 16 47 H 0.23 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -59.48 381.05 3.38 -56.10 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: 0.16 Total: 40.65 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 8.03 Total: 3.22 kcal Atomic # 7 Polarization: -136.28 SS G_CDS: -6.85 Total: -143.13 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -59.48 3.38 -56.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.031 kcal (2) G-P(sol) polarization free energy of solvation -59.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds