Wall clock time and date at job start Tue Mar 31 2020 14:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38674 * 119.27512 * 2 1 4 4 C 1.38005 * 119.62776 * 179.97438 * 3 2 1 5 5 C 1.41003 * 118.28168 * 0.02562 * 4 3 2 6 6 C 1.41017 * 120.70538 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00371 * 155.00980 * 6 5 4 8 8 C 1.39954 * 120.00202 * 335.00409 * 6 5 4 9 9 N 1.30867 * 119.99373 * 343.33726 * 8 6 5 10 10 Si 1.86794 * 120.00004 * 163.33790 * 8 6 5 11 11 H 1.48504 * 109.47322 * 94.68102 * 10 8 6 12 12 H 1.48494 * 109.47038 * 214.67688 * 10 8 6 13 13 H 1.48500 * 109.47256 * 334.68051 * 10 8 6 14 14 C 1.41705 * 118.58759 * 359.97438 * 5 4 3 15 15 N 1.38082 * 119.90640 * 180.02562 * 14 5 4 16 16 C 1.46502 * 120.00057 * 179.97438 * 15 14 5 17 17 C 1.50705 * 109.47209 * 180.02562 * 16 15 14 18 18 C 1.34665 * 126.59544 * 95.02281 * 17 16 15 19 19 N 1.34127 * 108.02375 * 179.97438 * 18 17 16 20 20 C 1.30490 * 109.25632 * 0.02562 * 19 18 17 21 21 N 1.35046 * 108.69951 * 359.76919 * 20 19 18 22 22 C 1.46507 * 126.39706 * 180.26473 * 21 20 19 23 23 C 1.52993 * 109.47286 * 265.12143 * 22 21 20 24 24 C 1.53779 * 113.61603 * 272.50065 * 23 22 21 25 25 C 1.53783 * 87.08346 * 220.01901 * 24 23 22 26 26 C 1.53781 * 113.61537 * 175.00008 * 23 22 21 27 27 N 1.31969 * 119.27392 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47102 * 269.99975 * 1 2 3 29 29 H 1.08997 * 109.47258 * 30.00069 * 1 2 3 30 30 H 1.09001 * 109.46968 * 150.00260 * 1 2 3 31 31 H 1.08002 * 120.18834 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.86432 * 179.97438 * 4 3 2 33 33 H 0.97000 * 119.99612 * 180.02562 * 9 8 6 34 34 H 0.97006 * 120.00286 * 359.97403 * 15 14 5 35 35 H 1.08994 * 109.47629 * 299.99874 * 16 15 14 36 36 H 1.09006 * 109.47010 * 60.00327 * 16 15 14 37 37 H 1.08006 * 125.98445 * 359.96811 * 18 17 16 38 38 H 1.08004 * 125.65157 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.46905 * 25.12406 * 22 21 20 40 40 H 1.09000 * 109.46821 * 145.12127 * 22 21 20 41 41 H 1.08999 * 112.84944 * 43.80274 * 23 22 21 42 42 H 1.09008 * 113.61227 * 334.56080 * 24 23 22 43 43 H 1.08995 * 113.61888 * 105.46871 * 24 23 22 44 44 H 1.09000 * 113.61490 * 270.88458 * 25 24 23 45 45 H 1.09002 * 113.61898 * 139.97721 * 25 24 23 46 46 H 1.08998 * 113.61407 * 254.53032 * 26 23 22 47 47 H 1.08995 * 113.61520 * 25.35047 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2096 0.0000 4 6 3.5652 1.2181 0.0005 5 6 4.2409 -0.0195 0.0005 6 6 5.6501 -0.0704 0.0005 7 1 6.1592 -0.9371 0.3956 8 6 6.3892 1.0021 -0.5116 9 7 5.8078 1.8919 -1.2750 10 14 8.2053 1.1633 -0.1056 11 1 9.0115 0.5432 -1.1877 12 1 8.5600 2.6002 0.0144 13 1 8.4883 0.4745 1.1792 14 6 3.4737 -1.2109 0.0005 15 7 4.1074 -2.4377 0.0010 16 6 3.3162 -3.6708 0.0016 17 6 4.2408 -4.8609 0.0027 18 6 4.6582 -5.5522 1.0803 19 7 5.4675 -6.5339 0.6557 20 6 5.5679 -6.4769 -0.6441 21 7 4.8140 -5.4499 -1.0919 22 6 4.6430 -5.0412 -2.4884 23 6 5.6381 -3.9273 -2.8194 24 6 5.1145 -2.5177 -2.4974 25 6 5.7732 -2.0588 -3.8091 26 6 5.6248 -3.5089 -4.2991 27 7 2.1523 -1.1512 0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6364 2.1398 -0.0004 32 1 4.1135 2.1486 0.0001 33 1 6.3200 2.6351 -1.6303 34 1 5.0763 -2.4832 0.0010 35 1 2.6876 -3.6988 0.8915 36 1 2.6876 -3.6995 -0.8885 37 1 4.3886 -5.3512 2.1067 38 1 6.1540 -7.1430 -1.2600 39 1 4.8231 -5.8952 -3.1415 40 1 3.6267 -4.6769 -2.6385 41 1 6.6372 -4.1228 -2.4299 42 1 4.0269 -2.4435 -2.5058 43 1 5.5629 -2.0782 -1.6065 44 1 6.8093 -1.7421 -3.6898 45 1 5.1732 -1.3440 -4.3723 46 1 6.4853 -3.8696 -4.8626 47 1 4.6774 -3.7070 -4.8003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161535638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:17 Heat of formation + Delta-G solvation = 114.484639 kcal Electronic energy + Delta-G solvation = -28789.038410 eV Core-core repulsion = 25166.179868 eV Total energy + Delta-G solvation = -3622.858542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.99189 -38.82138 -38.41759 -35.09461 -34.14829 -33.65512 -31.26360 -30.48094 -28.95515 -28.07019 -27.61961 -25.35766 -25.13497 -23.66630 -23.19009 -21.23846 -20.87380 -20.75506 -19.48378 -19.22551 -17.28038 -17.16596 -16.06400 -15.80126 -15.33331 -15.11980 -14.74543 -14.54360 -13.93419 -13.87875 -13.60031 -13.39942 -13.31487 -13.07500 -12.69992 -12.58666 -12.28611 -12.11431 -11.96657 -11.79317 -11.65153 -11.48604 -11.40900 -11.38753 -11.19972 -10.85750 -10.59198 -10.53196 -10.16060 -9.91829 -9.83330 -9.74245 -9.28898 -9.26693 -8.81777 -8.31921 -8.03517 -7.87467 -6.83938 -6.51526 -4.23576 2.14295 2.68865 2.90659 3.03541 3.05140 3.09773 3.20009 3.32150 3.89060 4.49024 4.53946 4.63729 4.74449 4.78900 4.82924 4.96566 5.10487 5.22525 5.33032 5.44035 5.46226 5.62932 5.75227 5.79608 5.82516 5.93976 6.03782 6.08868 6.12093 6.17010 6.30191 6.41916 6.42977 6.45560 6.55647 6.65155 6.75856 6.80431 6.83801 6.91684 6.92556 7.09242 7.19480 7.35230 7.62193 7.76728 7.97909 8.22600 8.25091 8.46710 8.63285 8.76153 8.97148 9.75821 10.16447 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009045 B = 0.005658 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.046863 B = 4947.973329 C = 6208.465106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.026 3.974 3 C -0.185 4.185 4 C -0.124 4.124 5 C 0.035 3.965 6 C -0.452 4.452 7 H 0.071 0.929 8 C 0.080 3.920 9 N -0.794 5.794 10 Si 0.897 3.103 11 H -0.272 1.272 12 H -0.276 1.276 13 H -0.261 1.261 14 C 0.310 3.690 15 N -0.724 5.724 16 C 0.222 3.778 17 C -0.026 4.026 18 C -0.018 4.018 19 N -0.498 5.498 20 C 0.174 3.826 21 N -0.445 5.445 22 C 0.115 3.885 23 C -0.134 4.134 24 C -0.120 4.120 25 C -0.138 4.138 26 C -0.130 4.130 27 N -0.529 5.529 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.279 0.721 34 H 0.405 0.595 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.167 0.833 38 H 0.199 0.801 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 -8.672 -4.885 9.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 C -0.207 4.207 4 C -0.150 4.150 5 C 0.028 3.972 6 C -0.483 4.483 7 H 0.090 0.910 8 C -0.137 4.137 9 N -0.420 5.420 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.201 1.201 13 H -0.185 1.185 14 C 0.073 3.927 15 N -0.366 5.366 16 C 0.096 3.904 17 C -0.141 4.141 18 C -0.167 4.167 19 N -0.216 5.216 20 C -0.108 4.108 21 N -0.127 5.127 22 C -0.008 4.008 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.176 4.176 26 C -0.168 4.168 27 N -0.247 5.247 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.244 0.756 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.184 0.816 38 H 0.216 0.784 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.772 -9.837 -4.671 10.917 hybrid contribution 1.435 1.542 -0.526 2.171 sum 0.663 -8.295 -5.197 9.811 Atomic orbital electron populations 1.20283 0.91920 1.00661 1.00287 1.19919 0.94200 0.87995 1.08707 1.21212 0.95377 0.96613 1.07528 1.21330 0.92082 0.98210 1.03363 1.17848 0.93727 0.89968 0.95683 1.19050 0.90717 1.02597 1.35978 0.91049 1.25727 1.00321 0.94939 0.92757 1.69807 1.38218 1.11106 1.22893 0.86468 0.82785 0.78501 0.80068 1.19749 1.20107 1.18519 1.18343 0.87838 0.85247 1.01314 1.44010 1.07400 1.00635 1.84549 1.19132 0.90191 0.79400 1.01666 1.21537 1.04709 1.00908 0.86926 1.22088 1.00630 0.95364 0.98574 1.70258 1.19245 1.23135 1.09005 1.24825 0.99978 0.94004 0.91989 1.45458 1.35614 1.24297 1.07338 1.21988 1.01386 0.98657 0.78733 1.23041 0.99039 0.95471 0.97715 1.23203 1.00862 0.92644 0.99047 1.22723 1.01312 0.95212 0.98335 1.22892 1.01563 0.97770 0.94618 1.66334 1.08359 1.29832 1.20198 0.93273 0.93002 0.92850 0.88930 0.85812 0.91051 0.75649 0.91099 0.92859 0.81564 0.78398 0.89327 0.89079 0.89118 0.90068 0.88712 0.90576 0.91625 0.91859 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.01 0.37 -0.93 16 2 C 0.03 0.58 6.79 -82.37 -0.56 0.02 16 3 C -0.18 -4.22 9.69 -39.51 -0.38 -4.60 16 4 C -0.12 -3.06 8.79 -38.62 -0.34 -3.40 16 5 C 0.03 0.85 5.60 -106.47 -0.60 0.25 16 6 C -0.45 -10.80 7.26 -37.89 -0.28 -11.08 16 7 H 0.07 1.66 6.68 -52.49 -0.35 1.31 16 8 C 0.08 1.86 5.18 -17.32 -0.09 1.77 16 9 N -0.79 -19.24 10.96 55.55 0.61 -18.63 16 10 Si 0.90 17.94 29.59 -169.99 -5.03 12.91 16 11 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 12 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 13 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 14 C 0.31 6.97 7.08 -155.03 -1.10 5.88 16 15 N -0.72 -13.76 3.10 -61.15 -0.19 -13.95 16 16 C 0.22 3.68 5.67 -5.19 -0.03 3.65 16 17 C -0.03 -0.39 6.32 -81.60 -0.52 -0.90 16 18 C -0.02 -0.28 11.79 -17.81 -0.21 -0.49 16 19 N -0.50 -7.89 11.25 -14.67 -0.16 -8.05 16 20 C 0.17 2.28 12.56 -90.38 -1.13 1.15 16 21 N -0.44 -5.87 2.75 -113.99 -0.31 -6.18 16 22 C 0.11 1.28 5.78 -4.04 -0.02 1.26 16 23 C -0.13 -1.67 3.96 -89.81 -0.36 -2.02 16 24 C -0.12 -1.94 5.49 -25.92 -0.14 -2.08 16 25 C -0.14 -2.07 8.08 -25.91 -0.21 -2.28 16 26 C -0.13 -1.50 7.64 -25.92 -0.20 -1.70 16 27 N -0.53 -11.94 9.44 -8.11 -0.08 -12.01 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.12 3.18 6.26 -52.49 -0.33 2.85 16 33 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 34 H 0.40 7.86 4.92 -40.82 -0.20 7.66 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.90 7.47 -51.93 -0.39 0.52 16 37 H 0.17 2.40 8.06 -52.48 -0.42 1.97 16 38 H 0.20 1.83 8.06 -52.48 -0.42 1.41 16 39 H 0.09 0.75 8.13 -51.93 -0.42 0.33 16 40 H 0.09 1.07 7.16 -51.93 -0.37 0.69 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.46 7.38 -51.92 -0.38 1.08 16 43 H 0.09 1.80 4.35 -51.93 -0.23 1.58 16 44 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -26.95 374.24 -12.19 -39.14 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -6.87 Total: 16.64 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -5.79 Total: -15.51 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.14 Total: -58.82 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -26.95 -12.19 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161535638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.628 kcal (2) G-P(sol) polarization free energy of solvation -26.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds