Wall clock time and date at job start Tue Mar 31 2020 14:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38674 * 119.27512 * 2 1 4 4 C 1.38005 * 119.62776 * 179.97438 * 3 2 1 5 5 C 1.41003 * 118.28168 * 0.02562 * 4 3 2 6 6 C 1.41017 * 120.70538 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00371 * 155.00980 * 6 5 4 8 8 C 1.39954 * 120.00202 * 335.00409 * 6 5 4 9 9 N 1.30867 * 119.99373 * 343.33726 * 8 6 5 10 10 Si 1.86794 * 120.00004 * 163.33790 * 8 6 5 11 11 H 1.48504 * 109.47322 * 94.68102 * 10 8 6 12 12 H 1.48494 * 109.47038 * 214.67688 * 10 8 6 13 13 H 1.48500 * 109.47256 * 334.68051 * 10 8 6 14 14 C 1.41705 * 118.58759 * 359.97438 * 5 4 3 15 15 N 1.38082 * 119.90640 * 180.02562 * 14 5 4 16 16 C 1.46502 * 120.00057 * 179.97438 * 15 14 5 17 17 C 1.50705 * 109.47209 * 180.02562 * 16 15 14 18 18 C 1.34665 * 126.59544 * 95.02281 * 17 16 15 19 19 N 1.34127 * 108.02375 * 179.97438 * 18 17 16 20 20 C 1.30490 * 109.25632 * 0.02562 * 19 18 17 21 21 N 1.35046 * 108.69951 * 359.76919 * 20 19 18 22 22 C 1.46507 * 126.39706 * 180.26473 * 21 20 19 23 23 C 1.52993 * 109.47286 * 265.12143 * 22 21 20 24 24 C 1.53779 * 113.61603 * 272.50065 * 23 22 21 25 25 C 1.53783 * 87.08346 * 220.01901 * 24 23 22 26 26 C 1.53781 * 113.61537 * 175.00008 * 23 22 21 27 27 N 1.31969 * 119.27392 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47102 * 269.99975 * 1 2 3 29 29 H 1.08997 * 109.47258 * 30.00069 * 1 2 3 30 30 H 1.09001 * 109.46968 * 150.00260 * 1 2 3 31 31 H 1.08002 * 120.18834 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.86432 * 179.97438 * 4 3 2 33 33 H 0.97000 * 119.99612 * 180.02562 * 9 8 6 34 34 H 0.97006 * 120.00286 * 359.97403 * 15 14 5 35 35 H 1.08994 * 109.47629 * 299.99874 * 16 15 14 36 36 H 1.09006 * 109.47010 * 60.00327 * 16 15 14 37 37 H 1.08006 * 125.98445 * 359.96811 * 18 17 16 38 38 H 1.08004 * 125.65157 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.46905 * 25.12406 * 22 21 20 40 40 H 1.09000 * 109.46821 * 145.12127 * 22 21 20 41 41 H 1.08999 * 112.84944 * 43.80274 * 23 22 21 42 42 H 1.09008 * 113.61227 * 334.56080 * 24 23 22 43 43 H 1.08995 * 113.61888 * 105.46871 * 24 23 22 44 44 H 1.09000 * 113.61490 * 270.88458 * 25 24 23 45 45 H 1.09002 * 113.61898 * 139.97721 * 25 24 23 46 46 H 1.08998 * 113.61407 * 254.53032 * 26 23 22 47 47 H 1.08995 * 113.61520 * 25.35047 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2096 0.0000 4 6 3.5652 1.2181 0.0005 5 6 4.2409 -0.0195 0.0005 6 6 5.6501 -0.0704 0.0005 7 1 6.1592 -0.9371 0.3956 8 6 6.3892 1.0021 -0.5116 9 7 5.8078 1.8919 -1.2750 10 14 8.2053 1.1633 -0.1056 11 1 9.0115 0.5432 -1.1877 12 1 8.5600 2.6002 0.0144 13 1 8.4883 0.4745 1.1792 14 6 3.4737 -1.2109 0.0005 15 7 4.1074 -2.4377 0.0010 16 6 3.3162 -3.6708 0.0016 17 6 4.2408 -4.8609 0.0027 18 6 4.6582 -5.5522 1.0803 19 7 5.4675 -6.5339 0.6557 20 6 5.5679 -6.4769 -0.6441 21 7 4.8140 -5.4499 -1.0919 22 6 4.6430 -5.0412 -2.4884 23 6 5.6381 -3.9273 -2.8194 24 6 5.1145 -2.5177 -2.4974 25 6 5.7732 -2.0588 -3.8091 26 6 5.6248 -3.5089 -4.2991 27 7 2.1523 -1.1512 0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6364 2.1398 -0.0004 32 1 4.1135 2.1486 0.0001 33 1 6.3200 2.6351 -1.6303 34 1 5.0763 -2.4832 0.0010 35 1 2.6876 -3.6988 0.8915 36 1 2.6876 -3.6995 -0.8885 37 1 4.3886 -5.3512 2.1067 38 1 6.1540 -7.1430 -1.2600 39 1 4.8231 -5.8952 -3.1415 40 1 3.6267 -4.6769 -2.6385 41 1 6.6372 -4.1228 -2.4299 42 1 4.0269 -2.4435 -2.5058 43 1 5.5629 -2.0782 -1.6065 44 1 6.8093 -1.7421 -3.6898 45 1 5.1732 -1.3440 -4.3723 46 1 6.4853 -3.8696 -4.8626 47 1 4.6774 -3.7070 -4.8003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161535638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:15 Heat of formation + Delta-G solvation = 104.284755 kcal Electronic energy + Delta-G solvation = -28789.480710 eV Core-core repulsion = 25166.179868 eV Total energy + Delta-G solvation = -3623.300843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.09838 -40.43062 -39.66572 -36.65026 -35.91916 -34.74208 -32.84653 -32.16709 -30.39316 -29.35320 -29.06406 -26.66636 -26.42243 -25.30376 -24.27993 -22.60195 -22.48026 -22.31040 -20.68447 -20.34141 -19.09205 -18.40467 -17.52802 -17.29492 -16.69048 -16.41816 -16.16935 -15.79712 -15.58141 -15.21448 -14.89524 -14.86865 -14.57415 -14.24230 -14.13884 -14.04367 -13.74161 -13.43599 -13.32861 -13.23088 -13.10707 -13.04251 -12.91503 -12.76983 -12.53097 -12.43443 -12.18213 -11.73215 -11.61477 -11.35346 -11.12757 -11.01699 -10.90337 -10.45406 -10.37838 -9.91966 -9.71263 -9.35804 -8.61495 -8.24011 -6.06134 0.94753 1.00344 1.27698 1.37566 1.45448 1.50912 1.88746 2.18137 2.20216 2.83610 2.98187 3.53095 3.63258 3.75373 3.79694 3.83241 3.93983 4.03934 4.19595 4.23498 4.26962 4.29971 4.46359 4.54006 4.56063 4.72471 4.77293 4.84335 4.88248 4.93292 4.94858 5.00999 5.02353 5.09088 5.09472 5.22703 5.28489 5.30817 5.45179 5.46918 5.48222 5.60042 5.75568 5.83494 5.95282 6.17586 6.34400 6.45056 6.80024 6.84657 6.94876 7.12031 7.20568 7.98255 8.40637 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009045 B = 0.005658 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.046863 B = 4947.973329 C = 6208.465106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.022 3.978 3 C -0.201 4.201 4 C -0.147 4.147 5 C 0.005 3.995 6 C -0.466 4.466 7 H 0.069 0.931 8 C 0.045 3.955 9 N -0.824 5.824 10 Si 0.959 3.041 11 H -0.265 1.265 12 H -0.272 1.272 13 H -0.264 1.264 14 C 0.314 3.686 15 N -0.712 5.712 16 C 0.233 3.767 17 C -0.038 4.038 18 C -0.028 4.028 19 N -0.531 5.531 20 C 0.192 3.808 21 N -0.443 5.443 22 C 0.115 3.885 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.149 4.149 26 C -0.106 4.106 27 N -0.540 5.540 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.283 0.717 34 H 0.402 0.598 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.168 0.832 38 H 0.242 0.758 39 H 0.132 0.868 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.087 0.913 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.184 -10.965 -6.111 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C -0.223 4.223 4 C -0.174 4.174 5 C -0.002 4.002 6 C -0.497 4.497 7 H 0.087 0.913 8 C -0.170 4.170 9 N -0.451 5.451 10 Si 0.782 3.218 11 H -0.190 1.190 12 H -0.197 1.197 13 H -0.188 1.188 14 C 0.075 3.925 15 N -0.353 5.353 16 C 0.108 3.892 17 C -0.153 4.153 18 C -0.177 4.177 19 N -0.249 5.249 20 C -0.091 4.091 21 N -0.125 5.125 22 C -0.006 4.006 23 C -0.136 4.136 24 C -0.164 4.164 25 C -0.187 4.187 26 C -0.144 4.144 27 N -0.259 5.259 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.241 0.759 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.185 0.815 38 H 0.258 0.742 39 H 0.150 0.850 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.445 -12.146 -5.903 13.512 hybrid contribution 1.260 2.224 -0.148 2.561 sum 0.815 -9.922 -6.051 11.650 Atomic orbital electron populations 1.20327 0.88537 1.02005 1.01722 1.20691 0.96535 0.87486 1.06465 1.21429 0.94816 0.97987 1.08070 1.21332 0.93171 0.97815 1.05068 1.18119 0.94434 0.90708 0.96917 1.19124 0.90835 1.03096 1.36651 0.91276 1.26378 1.03897 0.94422 0.92266 1.69872 1.39740 1.11737 1.23779 0.85521 0.78220 0.78436 0.79628 1.19019 1.19684 1.18770 1.18528 0.88019 0.86023 0.99911 1.44038 1.07345 1.00539 1.83348 1.19003 0.90168 0.78968 1.01077 1.21199 1.05495 1.00733 0.87896 1.22238 1.00791 0.95673 0.98966 1.70268 1.20203 1.23762 1.10705 1.25659 0.98474 0.93339 0.91613 1.45560 1.35200 1.24061 1.07635 1.22145 1.00568 0.99715 0.78169 1.22887 0.98992 0.93559 0.98201 1.23038 0.99162 0.96000 0.98209 1.22761 1.00290 0.97587 0.98080 1.22777 1.03380 0.94075 0.94138 1.66507 1.08163 1.30140 1.21101 0.91652 0.91020 0.92138 0.87080 0.87596 0.90684 0.75930 0.91792 0.93145 0.81460 0.74206 0.85008 0.89644 0.89178 0.92446 0.91964 0.91400 0.93336 0.89426 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 10.15 71.24 0.72 -1.56 16 2 C 0.02 0.98 6.79 42.64 0.29 1.27 16 3 C -0.20 -9.33 9.69 22.32 0.22 -9.11 16 4 C -0.15 -7.64 8.79 22.89 0.20 -7.44 16 5 C 0.01 0.27 5.60 -21.06 -0.12 0.15 16 6 C -0.47 -23.25 7.26 23.37 0.17 -23.08 16 7 H 0.07 3.36 6.68 -2.91 -0.02 3.34 16 8 C 0.04 2.16 5.18 85.25 0.44 2.60 16 9 N -0.82 -41.62 10.96 21.83 0.24 -41.38 16 10 Si 0.96 37.64 29.59 68.60 2.03 39.67 16 11 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 12 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 13 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 14 C 0.31 14.59 7.08 134.05 0.95 15.54 16 15 N -0.71 -27.90 3.10 -347.37 -1.08 -28.98 16 16 C 0.23 7.79 5.67 85.63 0.49 8.27 16 17 C -0.04 -1.12 6.32 40.95 0.26 -0.86 16 18 C -0.03 -0.86 11.79 83.52 0.98 0.13 16 19 N -0.53 -15.81 11.25 -200.31 -2.25 -18.07 16 20 C 0.19 4.37 12.56 180.26 2.26 6.64 16 21 N -0.44 -10.59 2.75 -514.55 -1.42 -12.01 16 22 C 0.12 2.20 5.78 86.38 0.50 2.70 16 23 C -0.12 -2.68 3.96 -10.27 -0.04 -2.72 16 24 C -0.13 -4.14 5.49 31.12 0.17 -3.97 16 25 C -0.15 -4.49 8.08 31.12 0.25 -4.24 16 26 C -0.11 -2.14 7.64 31.12 0.24 -1.90 16 27 N -0.54 -24.68 9.44 -179.58 -1.70 -26.38 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 29 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 32 H 0.11 5.76 6.26 -2.91 -0.02 5.74 16 33 H 0.28 13.16 8.30 -92.71 -0.77 12.39 16 34 H 0.40 16.22 4.92 -92.70 -0.46 15.76 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 1.72 7.47 -2.38 -0.02 1.70 16 37 H 0.17 4.86 8.06 -2.91 -0.02 4.84 16 38 H 0.24 3.17 8.06 -2.91 -0.02 3.14 16 39 H 0.13 1.48 8.13 -2.39 -0.02 1.46 16 40 H 0.09 1.79 7.16 -2.39 -0.02 1.78 16 41 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.06 2.13 7.38 -2.38 -0.02 2.11 16 43 H 0.06 2.46 4.35 -2.39 -0.01 2.45 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.09 1.65 8.10 -2.39 -0.02 1.64 16 Total: -1.00 -61.45 374.24 4.34 -57.11 By element: Atomic # 1 Polarization: 47.08 SS G_CDS: 0.53 Total: 47.61 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 7.98 Total: -17.58 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -6.20 Total: -126.81 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -61.45 4.34 -57.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161535638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.396 kcal (2) G-P(sol) polarization free energy of solvation -61.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds