Wall clock time and date at job start Tue Mar 31 2020 14:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86805 * 119.99760 * 2 1 4 4 H 1.48499 * 109.46882 * 269.99562 * 3 2 1 5 5 H 1.48490 * 109.47086 * 30.00017 * 3 2 1 6 6 H 1.48502 * 109.47075 * 149.99901 * 3 2 1 7 7 C 1.39949 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00057 * 164.00066 * 7 2 1 9 9 C 1.41016 * 120.00348 * 344.01057 * 7 2 1 10 10 C 1.41008 * 120.70228 * 334.85121 * 9 7 2 11 11 C 1.38003 * 118.28154 * 180.02562 * 10 9 7 12 12 C 1.38682 * 119.62565 * 0.02562 * 11 10 9 13 13 N 1.31968 * 121.44943 * 359.97438 * 12 11 10 14 14 C 1.32267 * 121.86485 * 0.02562 * 13 12 11 15 15 N 1.38086 * 119.90490 * 180.02562 * 14 13 12 16 16 C 1.46503 * 120.00166 * 0.02562 * 15 14 13 17 17 C 1.53001 * 109.47115 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.46982 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.17235 * 304.29032 * 18 17 16 20 20 C 1.50925 * 109.17901 * 63.52331 * 18 17 16 21 21 N 1.44747 * 116.65055 * 192.87190 * 20 18 17 22 22 C 1.47455 * 112.81506 * 286.16976 * 21 20 18 23 23 C 1.51961 * 107.03067 * 80.28029 * 22 21 20 24 24 C 1.34301 * 127.07103 * 115.36223 * 23 22 21 25 25 C 1.41163 * 107.11944 * 179.84144 * 24 23 22 26 26 C 1.35122 * 107.44684 * 0.02562 * 25 24 23 27 27 N 1.35873 * 107.94944 * 0.02672 * 26 25 24 28 28 C 1.47835 * 126.95777 * 179.90779 * 27 26 25 29 29 H 0.96998 * 119.99894 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.86144 * 0.02562 * 10 9 7 31 31 H 1.07999 * 120.18529 * 180.02562 * 11 10 9 32 32 H 1.08003 * 119.27571 * 180.02562 * 12 11 10 33 33 H 0.97005 * 120.00326 * 179.97438 * 15 14 13 34 34 H 1.09001 * 109.47025 * 299.99504 * 16 15 14 35 35 H 1.09005 * 109.47073 * 59.99566 * 16 15 14 36 36 H 1.09001 * 109.46926 * 299.99757 * 17 16 15 37 37 H 1.08997 * 109.47209 * 60.00244 * 17 16 15 38 38 H 1.09000 * 108.01594 * 314.69958 * 20 18 17 39 39 H 1.09000 * 108.01116 * 71.08971 * 20 18 17 40 40 H 1.00902 * 110.96994 * 51.45740 * 21 20 18 41 41 H 1.08995 * 109.94325 * 320.90219 * 22 21 20 42 42 H 1.08998 * 109.93922 * 199.65564 * 22 21 20 43 43 H 1.07992 * 126.44476 * 359.83362 * 24 23 22 44 44 H 1.08001 * 126.27539 * 180.02562 * 25 24 23 45 45 H 1.07995 * 126.01996 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.94357 * 124.82431 * 28 27 26 47 47 H 1.09005 * 110.02152 * 3.61410 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4401 2.6526 0.7000 6 1 3.5402 1.4403 0.7001 7 6 2.0085 -1.2120 0.0005 8 1 3.0571 -1.2302 -0.2573 9 6 1.3444 -2.4095 0.3375 10 6 0.1961 -2.3903 1.1557 11 6 -0.4139 -3.5916 1.4545 12 6 0.1113 -4.7716 0.9495 13 7 1.1868 -4.7747 0.1847 14 6 1.8174 -3.6577 -0.1381 15 7 2.9392 -3.7080 -0.9417 16 6 3.4291 -4.9973 -1.4359 17 6 4.6740 -4.7737 -2.2968 18 6 5.1860 -6.1202 -2.8124 19 1 5.3650 -6.7831 -1.9658 20 6 4.1418 -6.7365 -3.7111 21 7 4.3250 -8.1296 -4.0590 22 6 5.4081 -8.3368 -5.0379 23 6 6.7173 -8.3014 -4.2672 24 6 7.5897 -9.3098 -4.1068 25 6 8.6560 -8.8162 -3.3245 26 6 8.3855 -7.5231 -3.0407 27 7 7.1966 -7.2076 -3.6177 28 6 6.5042 -5.9023 -3.5703 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1958 -1.4597 1.5387 31 1 -1.2954 -3.6126 2.0781 32 1 -0.3709 -5.7084 1.1865 33 1 3.4025 -2.8897 -1.1796 34 1 3.6815 -5.6381 -0.5910 35 1 2.6540 -5.4748 -2.0354 36 1 4.4212 -4.1331 -3.1417 37 1 5.4491 -4.2960 -1.6976 38 1 3.1733 -6.6357 -3.2212 39 1 4.1100 -6.1599 -4.6356 40 1 4.4708 -8.6917 -3.2339 41 1 5.3935 -7.5409 -5.7825 42 1 5.2892 -9.3048 -5.5245 43 1 7.4935 -10.3103 -4.5018 44 1 9.5282 -9.3704 -3.0105 45 1 9.0052 -6.8577 -2.4579 46 1 6.2980 -5.5537 -4.5822 47 1 7.1194 -5.1724 -3.0440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163049956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:01 Heat of formation + Delta-G solvation = 80.981872 kcal Electronic energy + Delta-G solvation = -26959.062406 eV Core-core repulsion = 23334.751075 eV Total energy + Delta-G solvation = -3624.311331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70366 -38.61865 -37.90895 -35.40586 -34.04237 -33.98259 -31.81690 -30.41178 -29.89639 -28.97990 -26.91436 -26.20272 -25.32124 -23.86908 -22.91859 -21.40861 -20.74567 -20.54395 -20.50379 -19.09662 -17.50350 -17.27374 -16.47122 -16.19522 -15.78352 -15.35208 -14.99845 -14.81104 -14.13374 -14.03608 -13.89755 -13.78193 -13.63335 -13.33631 -12.93514 -12.72198 -12.63058 -12.52060 -12.38368 -12.08782 -11.82641 -11.71768 -11.55674 -11.47230 -11.34431 -11.30460 -10.96130 -10.89884 -10.76535 -10.56144 -9.80512 -9.33670 -8.98741 -8.86652 -8.72968 -8.10962 -8.08629 -7.92028 -6.83202 -6.53428 -4.26858 2.09527 2.71471 2.71986 2.87846 3.02710 3.05019 3.09043 3.21624 3.88414 4.09982 4.22175 4.34692 4.42667 4.57545 4.67359 4.76621 4.91665 4.99635 5.06126 5.22174 5.27621 5.31376 5.41011 5.51418 5.53658 5.58487 5.70852 5.76015 5.79406 6.00856 6.08362 6.12236 6.18301 6.36654 6.40737 6.43936 6.75397 6.81827 6.86231 6.87816 7.06759 7.08950 7.15592 7.19362 7.21382 7.63483 7.79058 7.97370 8.24926 8.48936 8.62923 8.75956 8.97326 9.76423 10.17721 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016490 B = 0.002606 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.567415 B =10740.369105 C =11776.362074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.074 0.926 9 C 0.031 3.969 10 C -0.125 4.125 11 C -0.191 4.191 12 C 0.002 3.998 13 N -0.532 5.532 14 C 0.303 3.697 15 N -0.732 5.732 16 C 0.147 3.853 17 C -0.122 4.122 18 C -0.128 4.128 19 H 0.080 0.920 20 C 0.051 3.949 21 N -0.678 5.678 22 C 0.127 3.873 23 C -0.028 4.028 24 C -0.190 4.190 25 C -0.208 4.208 26 C -0.012 4.012 27 N -0.440 5.440 28 C 0.108 3.892 29 H 0.280 0.720 30 H 0.125 0.875 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.401 0.599 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.348 0.652 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.159 0.841 46 H 0.086 0.914 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.553 -9.669 -8.028 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.092 0.908 9 C 0.024 3.976 10 C -0.152 4.152 11 C -0.214 4.214 12 C -0.151 4.151 13 N -0.250 5.250 14 C 0.066 3.934 15 N -0.372 5.372 16 C 0.021 3.979 17 C -0.161 4.161 18 C -0.150 4.150 19 H 0.099 0.901 20 C -0.079 4.079 21 N -0.305 5.305 22 C -0.002 4.002 23 C -0.141 4.141 24 C -0.216 4.216 25 C -0.233 4.233 26 C -0.143 4.143 27 N -0.116 5.116 28 C -0.013 4.013 29 H 0.091 0.909 30 H 0.143 0.857 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.238 0.762 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.167 0.833 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.176 0.824 46 H 0.104 0.896 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.944 -10.133 -8.824 17.977 hybrid contribution 1.062 2.127 0.922 2.549 sum 13.006 -8.007 -7.902 17.196 Atomic orbital electron populations 1.69807 1.07455 1.29046 1.36154 1.25810 0.94721 1.01015 0.92636 0.86351 0.80557 0.80940 0.79092 1.19626 1.20149 1.18617 1.19105 0.96792 0.90906 1.42008 0.90843 1.17927 0.94639 0.91332 0.93667 1.21357 0.98044 0.96740 0.99042 1.21419 1.01280 0.94394 1.04303 1.21369 0.95494 0.96164 1.02087 1.66554 1.10816 1.29769 1.17842 1.18454 0.90448 0.89699 0.94841 1.43663 1.30177 1.06897 1.56442 1.20921 0.93446 0.87396 0.96089 1.21736 0.98627 0.95548 1.00189 1.21856 0.94735 0.98915 0.99462 0.90129 1.21472 0.99072 0.88330 0.99020 1.60159 1.44532 1.07957 1.17881 1.21122 0.82457 1.03249 0.93403 1.21513 1.00197 0.87921 1.04494 1.20594 0.96062 0.98767 1.06170 1.20991 1.01314 0.94757 1.06209 1.21797 0.89517 0.97850 1.05097 1.44347 1.17059 1.09901 1.40255 1.22513 0.93733 0.83012 1.02085 0.90946 0.85723 0.88738 0.86501 0.76219 0.93481 0.92781 0.90991 0.91241 0.89122 0.91466 0.83284 0.90398 0.88336 0.84895 0.84982 0.82365 0.89580 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.17 10.93 55.55 0.61 -19.57 16 2 C 0.08 1.81 5.20 -17.32 -0.09 1.72 16 3 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.46 -11.41 8.52 -37.89 -0.32 -11.73 16 8 H 0.07 1.71 6.69 -52.48 -0.35 1.36 16 9 C 0.03 0.81 5.60 -106.47 -0.60 0.22 16 10 C -0.13 -3.24 8.79 -38.62 -0.34 -3.58 16 11 C -0.19 -4.52 10.08 -39.50 -0.40 -4.92 16 12 C 0.00 0.06 11.17 -17.33 -0.19 -0.14 16 13 N -0.53 -12.88 9.54 -11.87 -0.11 -12.99 16 14 C 0.30 7.34 7.52 -155.03 -1.17 6.17 16 15 N -0.73 -14.54 5.61 -59.97 -0.34 -14.88 16 16 C 0.15 2.34 5.41 -4.04 -0.02 2.32 16 17 C -0.12 -1.38 4.74 -26.73 -0.13 -1.51 16 18 C -0.13 -1.27 2.16 -91.35 -0.20 -1.47 16 19 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 20 C 0.05 0.53 5.08 -6.02 -0.03 0.50 16 21 N -0.68 -6.88 6.70 -116.70 -0.78 -7.66 16 22 C 0.13 1.16 6.60 -4.05 -0.03 1.13 16 23 C -0.03 -0.29 5.97 -81.53 -0.49 -0.78 16 24 C -0.19 -2.04 10.81 -39.86 -0.43 -2.47 16 25 C -0.21 -2.21 10.88 -39.58 -0.43 -2.64 16 26 C -0.01 -0.12 11.51 -16.87 -0.19 -0.32 16 27 N -0.44 -4.53 2.78 -111.01 -0.31 -4.83 16 28 C 0.11 0.95 5.88 -2.99 -0.02 0.93 16 29 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 30 H 0.13 3.30 6.25 -52.48 -0.33 2.97 16 31 H 0.09 1.97 8.06 -52.49 -0.42 1.54 16 32 H 0.12 2.38 8.06 -52.48 -0.42 1.95 16 33 H 0.40 7.58 6.68 -40.82 -0.27 7.31 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.92 6.19 -51.93 -0.32 0.59 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 38 H 0.09 1.10 5.75 -51.93 -0.30 0.80 16 39 H 0.07 0.67 7.55 -51.93 -0.39 0.28 16 40 H 0.35 3.63 8.55 -39.29 -0.34 3.30 16 41 H 0.08 0.68 7.76 -51.93 -0.40 0.28 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.09 0.70 7.88 -51.93 -0.41 0.29 16 47 H 0.10 0.74 7.91 -51.93 -0.41 0.33 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -28.82 372.71 -12.29 -41.11 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -6.88 Total: 16.82 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -5.07 Total: -16.57 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.93 Total: -59.93 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.82 -12.29 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163049956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.093 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds