Wall clock time and date at job start Tue Mar 31 2020 14:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86805 * 119.99760 * 2 1 4 4 H 1.48499 * 109.46882 * 269.99562 * 3 2 1 5 5 H 1.48490 * 109.47086 * 30.00017 * 3 2 1 6 6 H 1.48502 * 109.47075 * 149.99901 * 3 2 1 7 7 C 1.39949 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00057 * 164.00066 * 7 2 1 9 9 C 1.41016 * 120.00348 * 344.01057 * 7 2 1 10 10 C 1.41008 * 120.70228 * 334.85121 * 9 7 2 11 11 C 1.38003 * 118.28154 * 180.02562 * 10 9 7 12 12 C 1.38682 * 119.62565 * 0.02562 * 11 10 9 13 13 N 1.31968 * 121.44943 * 359.97438 * 12 11 10 14 14 C 1.32267 * 121.86485 * 0.02562 * 13 12 11 15 15 N 1.38086 * 119.90490 * 180.02562 * 14 13 12 16 16 C 1.46503 * 120.00166 * 0.02562 * 15 14 13 17 17 C 1.53001 * 109.47115 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.46982 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.17235 * 304.29032 * 18 17 16 20 20 C 1.50925 * 109.17901 * 63.52331 * 18 17 16 21 21 N 1.44747 * 116.65055 * 192.87190 * 20 18 17 22 22 C 1.47455 * 112.81506 * 286.16976 * 21 20 18 23 23 C 1.51961 * 107.03067 * 80.28029 * 22 21 20 24 24 C 1.34301 * 127.07103 * 115.36223 * 23 22 21 25 25 C 1.41163 * 107.11944 * 179.84144 * 24 23 22 26 26 C 1.35122 * 107.44684 * 0.02562 * 25 24 23 27 27 N 1.35873 * 107.94944 * 0.02672 * 26 25 24 28 28 C 1.47835 * 126.95777 * 179.90779 * 27 26 25 29 29 H 0.96998 * 119.99894 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.86144 * 0.02562 * 10 9 7 31 31 H 1.07999 * 120.18529 * 180.02562 * 11 10 9 32 32 H 1.08003 * 119.27571 * 180.02562 * 12 11 10 33 33 H 0.97005 * 120.00326 * 179.97438 * 15 14 13 34 34 H 1.09001 * 109.47025 * 299.99504 * 16 15 14 35 35 H 1.09005 * 109.47073 * 59.99566 * 16 15 14 36 36 H 1.09001 * 109.46926 * 299.99757 * 17 16 15 37 37 H 1.08997 * 109.47209 * 60.00244 * 17 16 15 38 38 H 1.09000 * 108.01594 * 314.69958 * 20 18 17 39 39 H 1.09000 * 108.01116 * 71.08971 * 20 18 17 40 40 H 1.00902 * 110.96994 * 51.45740 * 21 20 18 41 41 H 1.08995 * 109.94325 * 320.90219 * 22 21 20 42 42 H 1.08998 * 109.93922 * 199.65564 * 22 21 20 43 43 H 1.07992 * 126.44476 * 359.83362 * 24 23 22 44 44 H 1.08001 * 126.27539 * 180.02562 * 25 24 23 45 45 H 1.07995 * 126.01996 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.94357 * 124.82431 * 28 27 26 47 47 H 1.09005 * 110.02152 * 3.61410 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4401 2.6526 0.7000 6 1 3.5402 1.4403 0.7001 7 6 2.0085 -1.2120 0.0005 8 1 3.0571 -1.2302 -0.2573 9 6 1.3444 -2.4095 0.3375 10 6 0.1961 -2.3903 1.1557 11 6 -0.4139 -3.5916 1.4545 12 6 0.1113 -4.7716 0.9495 13 7 1.1868 -4.7747 0.1847 14 6 1.8174 -3.6577 -0.1381 15 7 2.9392 -3.7080 -0.9417 16 6 3.4291 -4.9973 -1.4359 17 6 4.6740 -4.7737 -2.2968 18 6 5.1860 -6.1202 -2.8124 19 1 5.3650 -6.7831 -1.9658 20 6 4.1418 -6.7365 -3.7111 21 7 4.3250 -8.1296 -4.0590 22 6 5.4081 -8.3368 -5.0379 23 6 6.7173 -8.3014 -4.2672 24 6 7.5897 -9.3098 -4.1068 25 6 8.6560 -8.8162 -3.3245 26 6 8.3855 -7.5231 -3.0407 27 7 7.1966 -7.2076 -3.6177 28 6 6.5042 -5.9023 -3.5703 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1958 -1.4597 1.5387 31 1 -1.2954 -3.6126 2.0781 32 1 -0.3709 -5.7084 1.1865 33 1 3.4025 -2.8897 -1.1796 34 1 3.6815 -5.6381 -0.5910 35 1 2.6540 -5.4748 -2.0354 36 1 4.4212 -4.1331 -3.1417 37 1 5.4491 -4.2960 -1.6976 38 1 3.1733 -6.6357 -3.2212 39 1 4.1100 -6.1599 -4.6356 40 1 4.4708 -8.6917 -3.2339 41 1 5.3935 -7.5409 -5.7825 42 1 5.2892 -9.3048 -5.5245 43 1 7.4935 -10.3103 -4.5018 44 1 9.5282 -9.3704 -3.0105 45 1 9.0052 -6.8577 -2.4579 46 1 6.2980 -5.5537 -4.5822 47 1 7.1194 -5.1724 -3.0440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163049956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:00 Heat of formation + Delta-G solvation = 65.169989 kcal Electronic energy + Delta-G solvation = -26959.748061 eV Core-core repulsion = 23334.751075 eV Total energy + Delta-G solvation = -3624.996986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.45838 -40.34681 -38.89686 -36.62334 -35.82636 -35.11092 -32.85649 -32.29171 -30.97571 -30.19845 -28.19836 -27.11092 -26.96181 -24.81908 -24.08626 -23.07169 -22.29728 -21.54417 -21.43369 -19.85570 -19.14250 -18.43628 -18.01782 -17.29934 -16.96421 -16.62815 -16.34499 -15.75613 -15.67140 -15.36026 -15.13965 -14.86066 -14.59674 -14.37645 -14.26796 -14.16825 -13.79116 -13.67327 -13.33299 -13.22560 -13.18431 -13.13597 -12.76864 -12.66415 -12.61250 -12.52776 -12.26221 -12.18394 -11.91434 -11.70675 -11.58666 -11.13195 -10.64812 -9.99950 -9.81548 -9.67926 -9.50785 -8.86492 -8.64357 -8.30896 -6.15403 0.92887 1.22211 1.32646 1.41359 1.51015 1.56498 1.98182 2.09648 2.22240 2.77259 2.85601 3.35043 3.51223 3.57885 3.79676 3.82227 3.97210 4.16987 4.19565 4.21598 4.29697 4.38491 4.44345 4.48966 4.52384 4.63640 4.68210 4.70977 4.80195 4.84366 4.87217 4.91803 5.00513 5.04786 5.20548 5.26972 5.28514 5.33005 5.36839 5.42756 5.79422 5.92067 6.03710 6.10001 6.10455 6.28001 6.39661 6.40583 6.47941 6.76055 6.85970 6.91436 7.15083 7.93375 8.38826 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.016490 B = 0.002606 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.567415 B =10740.369105 C =11776.362074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.033 3.967 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.478 4.478 8 H 0.084 0.916 9 C -0.001 4.001 10 C -0.153 4.153 11 C -0.199 4.199 12 C -0.003 4.003 13 N -0.545 5.545 14 C 0.296 3.704 15 N -0.726 5.726 16 C 0.150 3.850 17 C -0.107 4.107 18 C -0.113 4.113 19 H 0.065 0.935 20 C 0.055 3.945 21 N -0.682 5.682 22 C 0.131 3.869 23 C -0.036 4.036 24 C -0.207 4.207 25 C -0.226 4.226 26 C -0.021 4.021 27 N -0.444 5.444 28 C 0.109 3.891 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.147 0.853 33 H 0.405 0.595 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.345 0.655 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.178 0.822 46 H 0.098 0.902 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.146 -9.203 -8.952 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.509 4.509 8 H 0.102 0.898 9 C -0.008 4.008 10 C -0.179 4.179 11 C -0.221 4.221 12 C -0.156 4.156 13 N -0.264 5.264 14 C 0.057 3.943 15 N -0.365 5.365 16 C 0.026 3.974 17 C -0.146 4.146 18 C -0.135 4.135 19 H 0.083 0.917 20 C -0.075 4.075 21 N -0.309 5.309 22 C 0.002 3.998 23 C -0.150 4.150 24 C -0.233 4.233 25 C -0.251 4.251 26 C -0.151 4.151 27 N -0.120 5.120 28 C -0.011 4.011 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.164 0.836 33 H 0.242 0.758 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.164 0.836 41 H 0.103 0.897 42 H 0.128 0.872 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.196 0.804 46 H 0.116 0.884 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.553 -9.689 -9.765 19.311 hybrid contribution 0.532 1.870 1.209 2.290 sum 14.084 -7.819 -8.556 18.240 Atomic orbital electron populations 1.69885 1.09065 1.30278 1.36679 1.26698 0.95417 1.04352 0.91657 0.85210 0.79045 0.76114 0.79387 1.18662 1.19909 1.18089 1.19398 0.97384 0.91379 1.42736 0.89774 1.18315 0.95359 0.92629 0.94462 1.21391 0.99171 0.97020 1.00328 1.21651 1.02003 0.93852 1.04601 1.21900 0.95188 0.97273 1.01256 1.66670 1.11427 1.29711 1.18556 1.18746 0.91343 0.89307 0.94894 1.43797 1.28852 1.08570 1.55287 1.21009 0.95098 0.85335 0.95987 1.21603 0.96574 0.96635 0.99807 1.21659 0.95364 0.97543 0.98887 0.91680 1.21393 0.98181 0.88776 0.99179 1.60158 1.45153 1.07661 1.17955 1.21182 0.81444 1.04153 0.93001 1.21734 1.00555 0.88060 1.04644 1.20868 0.96418 0.99453 1.06537 1.21276 1.01874 0.95331 1.06573 1.22199 0.89729 0.98182 1.05020 1.44473 1.17136 1.10260 1.40121 1.22566 0.92940 0.82840 1.02760 0.90408 0.87240 0.86374 0.83566 0.75754 0.94887 0.93797 0.89840 0.90119 0.91241 0.90707 0.83643 0.89740 0.87220 0.84039 0.84003 0.80442 0.88373 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.66 10.93 21.83 0.24 -42.42 16 2 C 0.03 1.58 5.20 85.25 0.44 2.02 16 3 Si 0.98 36.37 29.59 68.60 2.03 38.40 16 4 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.48 -24.02 8.52 23.37 0.20 -23.82 16 8 H 0.08 3.88 6.69 -2.91 -0.02 3.86 16 9 C 0.00 -0.03 5.60 -21.06 -0.12 -0.15 16 10 C -0.15 -8.08 8.79 22.89 0.20 -7.88 16 11 C -0.20 -9.43 10.08 22.32 0.22 -9.21 16 12 C 0.00 -0.15 11.17 84.78 0.95 0.79 16 13 N -0.55 -26.43 9.54 -191.46 -1.83 -28.25 16 14 C 0.30 14.45 7.52 134.05 1.01 15.46 16 15 N -0.73 -28.64 5.61 -343.64 -1.93 -30.56 16 16 C 0.15 4.72 5.41 86.38 0.47 5.19 16 17 C -0.11 -2.24 4.74 30.60 0.14 -2.09 16 18 C -0.11 -2.06 2.16 -11.26 -0.02 -2.08 16 19 H 0.06 1.43 8.09 -2.38 -0.02 1.41 16 20 C 0.06 1.09 5.08 86.03 0.44 1.52 16 21 N -0.68 -13.16 6.70 -523.14 -3.50 -16.67 16 22 C 0.13 2.18 6.60 85.85 0.57 2.75 16 23 C -0.04 -0.71 5.97 41.43 0.25 -0.46 16 24 C -0.21 -4.23 10.81 22.09 0.24 -3.99 16 25 C -0.23 -4.54 10.88 22.27 0.24 -4.30 16 26 C -0.02 -0.39 11.51 83.35 0.96 0.57 16 27 N -0.44 -8.29 2.78 -505.11 -1.40 -9.69 16 28 C 0.11 1.65 5.88 86.33 0.51 2.16 16 29 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 30 H 0.11 6.01 6.25 -2.91 -0.02 6.00 16 31 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 32 H 0.15 5.73 8.06 -2.91 -0.02 5.71 16 33 H 0.41 15.02 6.68 -92.70 -0.62 14.40 16 34 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.04 1.49 6.19 -2.38 -0.01 1.48 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.55 8.04 -2.39 -0.02 1.53 16 38 H 0.07 1.68 5.75 -2.39 -0.01 1.66 16 39 H 0.07 1.36 7.55 -2.39 -0.02 1.35 16 40 H 0.34 7.02 8.55 -89.69 -0.77 6.25 16 41 H 0.08 1.30 7.76 -2.39 -0.02 1.28 16 42 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 44 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 46 H 0.10 1.29 7.88 -2.39 -0.02 1.27 16 47 H 0.11 1.35 7.91 -2.38 -0.02 1.34 16 Total: -1.00 -62.53 372.71 -0.09 -62.62 By element: Atomic # 1 Polarization: 50.49 SS G_CDS: -0.39 Total: 50.10 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 6.69 Total: -23.53 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -8.42 Total: -127.59 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -62.53 -0.09 -62.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163049956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.790 kcal (2) G-P(sol) polarization free energy of solvation -62.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds