Wall clock time and date at job start Tue Mar 31 2020 14:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86805 * 119.99876 * 2 1 4 4 H 1.48501 * 109.46948 * 239.99660 * 3 2 1 5 5 H 1.48494 * 109.46833 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47157 * 119.99886 * 3 2 1 7 7 C 1.40031 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00353 * 179.97438 * 7 2 1 9 9 C 1.41315 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.40591 * 119.78595 * 180.02562 * 9 7 2 11 11 C 1.38344 * 119.15042 * 179.97438 * 10 9 7 12 12 C 1.38638 * 118.67969 * 359.97438 * 11 10 9 13 13 C 1.39756 * 119.49023 * 0.02562 * 12 11 10 14 14 N 1.38830 * 119.58011 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00275 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.47150 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46761 * 179.97438 * 16 15 14 18 18 H 1.08995 * 109.17638 * 305.71726 * 17 16 15 19 19 C 1.50919 * 109.17558 * 65.00395 * 17 16 15 20 20 N 1.44762 * 116.64241 * 192.89032 * 19 17 16 21 21 C 1.47449 * 112.79094 * 286.14469 * 20 19 17 22 22 C 1.51956 * 107.02909 * 80.29423 * 21 20 19 23 23 C 1.34305 * 127.06080 * 115.56344 * 22 21 20 24 24 C 1.41150 * 107.11986 * 180.02562 * 23 22 21 25 25 C 1.35116 * 107.45160 * 359.65264 * 24 23 22 26 26 N 1.35885 * 107.94877 * 0.26621 * 25 24 23 27 27 C 1.47829 * 126.96438 * 179.86339 * 26 25 24 28 28 N 1.31970 * 120.83550 * 0.25004 * 13 12 11 29 29 H 0.96996 * 120.00143 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.42376 * 359.97169 * 10 9 7 31 31 H 1.07998 * 120.65758 * 179.97438 * 11 10 9 32 32 H 1.08003 * 120.25409 * 179.97438 * 12 11 10 33 33 H 0.97006 * 119.99885 * 179.97438 * 14 13 12 34 34 H 1.09001 * 109.46777 * 59.99507 * 15 14 13 35 35 H 1.09001 * 109.46817 * 300.00229 * 15 14 13 36 36 H 1.09001 * 109.47092 * 60.00278 * 16 15 14 37 37 H 1.08994 * 109.47152 * 299.99954 * 16 15 14 38 38 H 1.09004 * 108.01894 * 71.09120 * 19 17 16 39 39 H 1.08998 * 108.01434 * 314.69800 * 19 17 16 40 40 H 1.00899 * 110.99896 * 51.43341 * 20 19 17 41 41 H 1.09002 * 109.94518 * 320.91809 * 21 20 19 42 42 H 1.08999 * 109.94651 * 199.67417 * 21 20 19 43 43 H 1.08001 * 126.44033 * 359.89499 * 23 22 21 44 44 H 1.08008 * 126.27314 * 179.87269 * 24 23 22 45 45 H 1.07993 * 126.02832 * 180.30196 * 25 24 23 46 46 H 1.08996 * 109.94867 * 124.85630 * 27 26 25 47 47 H 1.09001 * 110.02225 * 3.63453 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3011 -2.4365 0.0005 10 6 2.0086 -3.6514 0.0016 11 6 1.3036 -4.8418 0.0022 12 6 -0.0820 -4.7944 0.0021 13 6 -0.7280 -3.5552 0.0010 14 7 -2.1155 -3.5056 0.0005 15 6 -2.8929 -4.7474 0.0005 16 6 -4.3861 -4.4143 0.0004 17 6 -5.1979 -5.7111 -0.0002 18 1 -4.8783 -6.3331 -0.8363 19 6 -4.9505 -6.4515 1.2914 20 7 -5.4028 -7.8254 1.3490 21 6 -6.8679 -7.9399 1.4685 22 6 -7.4441 -7.7524 0.0750 23 6 -8.1160 -8.6600 -0.6520 24 6 -8.4546 -8.0439 -1.8760 25 6 -7.9791 -6.7798 -1.8385 26 7 -7.3584 -6.6011 -0.6429 27 6 -6.6877 -5.3738 -0.1641 28 7 -0.0360 -2.4315 -0.0049 29 1 -0.4850 0.8400 -0.0004 30 1 3.0886 -3.6554 0.0020 31 1 1.8223 -5.7890 0.0026 32 1 -0.6577 -5.7083 0.0021 33 1 -2.5702 -2.6488 0.0001 34 1 -2.6504 -5.3278 0.8907 35 1 -2.6497 -5.3282 -0.8893 36 1 -4.6288 -3.8337 -0.8896 37 1 -4.6289 -3.8337 0.8904 38 1 -5.4408 -5.9013 2.0946 39 1 -3.8781 -6.4411 1.4858 40 1 -5.0622 -8.3516 0.5583 41 1 -7.2482 -7.1660 2.1352 42 1 -7.1339 -8.9253 1.8512 43 1 -8.3510 -9.6719 -0.3566 44 1 -8.9978 -8.4984 -2.6914 45 1 -8.0758 -6.0413 -2.6205 46 1 -7.1080 -5.0703 0.7947 47 1 -6.8096 -4.5731 -0.8936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163057565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:25 Heat of formation + Delta-G solvation = 89.615531 kcal Electronic energy + Delta-G solvation = -26724.689254 eV Core-core repulsion = 23100.752306 eV Total energy + Delta-G solvation = -3623.936948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.76533 -38.53455 -37.88538 -35.61275 -34.31329 -33.27878 -31.82504 -30.39471 -29.88876 -29.00661 -27.00382 -26.27809 -25.34919 -23.96081 -22.96717 -21.53078 -20.81021 -20.61659 -20.35205 -19.16004 -17.58804 -17.35590 -16.35029 -16.14875 -15.82100 -15.09635 -14.89348 -14.77481 -14.32899 -14.27097 -13.95592 -13.81464 -13.63959 -13.29379 -13.00473 -12.84694 -12.59901 -12.55079 -12.36894 -12.04387 -11.97353 -11.82056 -11.60341 -11.46082 -11.24361 -11.01532 -10.98322 -10.90044 -10.61390 -10.43691 -9.94348 -9.48555 -8.97825 -8.88516 -8.78748 -8.15234 -7.91741 -7.52182 -6.53411 -6.33894 -4.48230 2.03668 2.65324 2.82942 2.88234 3.09025 3.12009 3.23144 3.29779 3.96441 3.97868 4.10197 4.25570 4.29901 4.50044 4.68065 4.83109 4.84731 4.92096 4.98573 5.11053 5.17846 5.19257 5.32700 5.39107 5.47440 5.52311 5.58539 5.64183 5.86519 6.01944 6.07213 6.10631 6.13328 6.15628 6.19979 6.56856 6.72330 6.81603 6.84774 6.88945 6.93400 7.00167 7.11948 7.15427 7.24022 7.58800 7.80430 7.91205 8.15345 8.35153 8.66171 8.79364 9.10907 10.23557 10.39351 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.002229 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.562375 B =12557.331144 C =13207.799801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.316 4.316 11 C -0.032 4.032 12 C -0.367 4.367 13 C 0.410 3.590 14 N -0.740 5.740 15 C 0.143 3.857 16 C -0.120 4.120 17 C -0.129 4.129 18 H 0.081 0.919 19 C 0.052 3.948 20 N -0.678 5.678 21 C 0.128 3.872 22 C -0.029 4.029 23 C -0.190 4.190 24 C -0.207 4.207 25 C -0.011 4.011 26 N -0.441 5.441 27 C 0.108 3.892 28 N -0.532 5.532 29 H 0.269 0.731 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.395 0.605 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.348 0.652 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.159 0.841 46 H 0.086 0.914 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.693 -10.386 0.139 19.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.339 4.339 11 C -0.057 4.057 12 C -0.393 4.393 13 C 0.171 3.829 14 N -0.377 5.377 15 C 0.017 3.983 16 C -0.159 4.159 17 C -0.151 4.151 18 H 0.099 0.901 19 C -0.078 4.078 20 N -0.306 5.306 21 C -0.002 4.002 22 C -0.142 4.142 23 C -0.215 4.215 24 C -0.232 4.232 25 C -0.142 4.142 26 N -0.116 5.116 27 C -0.013 4.013 28 N -0.253 5.253 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.229 0.771 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.167 0.833 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.177 0.823 46 H 0.105 0.895 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.040 -9.374 0.948 19.471 hybrid contribution 0.276 0.478 -1.153 1.279 sum -16.764 -8.896 -0.206 18.979 Atomic orbital electron populations 1.70139 1.07150 1.27381 1.29229 1.26049 0.94865 1.00904 0.93541 0.86435 0.80110 0.80633 0.79857 1.19006 1.20378 1.18983 1.19548 0.94137 0.89394 1.43575 0.89925 1.18201 0.86912 0.91850 0.86546 1.21540 0.98434 0.93471 1.20444 1.20601 0.93461 0.96389 0.95205 1.20595 0.94612 0.95436 1.28612 1.18502 0.84239 0.90283 0.89913 1.44101 1.02819 1.06633 1.84182 1.21068 0.88679 0.87894 1.00650 1.21694 0.94842 0.96079 1.03246 1.21879 0.93444 0.98598 1.01201 0.90059 1.21462 1.02842 0.88198 0.95343 1.60157 1.10255 1.11408 1.48736 1.21117 0.86441 1.03220 0.89424 1.21500 1.07495 0.87438 0.97794 1.20602 1.05678 0.99542 0.95681 1.20996 1.08090 0.94608 0.99500 1.21809 1.03294 0.99232 0.89868 1.44339 1.42730 1.10703 1.13864 1.22498 0.92126 0.85349 1.01333 1.68204 1.07693 1.24345 1.25096 0.91940 0.88697 0.88928 0.89283 0.77087 0.92680 0.93272 0.90949 0.90765 0.91332 0.89390 0.83277 0.90364 0.88278 0.84865 0.84942 0.82328 0.89530 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.98 11.46 55.55 0.64 -18.34 16 2 C 0.07 1.83 5.50 -17.34 -0.10 1.73 16 3 Si 0.91 18.69 29.56 -169.99 -5.02 13.66 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.43 -11.80 9.14 -37.74 -0.34 -12.14 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.29 8.17 6.55 -84.99 -0.56 7.61 16 10 C -0.32 -8.05 9.83 -38.66 -0.38 -8.43 16 11 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 12 C -0.37 -8.46 9.34 -38.87 -0.36 -8.82 16 13 C 0.41 9.95 7.65 -155.32 -1.19 8.77 16 14 N -0.74 -14.29 5.72 -60.40 -0.35 -14.63 16 15 C 0.14 2.05 4.64 -4.04 -0.02 2.03 16 16 C -0.12 -1.22 4.73 -26.73 -0.13 -1.35 16 17 C -0.13 -1.15 2.15 -91.34 -0.20 -1.34 16 18 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 19 C 0.05 0.48 5.08 -6.02 -0.03 0.45 16 20 N -0.68 -6.19 6.70 -116.70 -0.78 -6.98 16 21 C 0.13 1.06 6.60 -4.05 -0.03 1.03 16 22 C -0.03 -0.28 5.97 -81.54 -0.49 -0.77 16 23 C -0.19 -1.93 10.81 -39.86 -0.43 -2.36 16 24 C -0.21 -2.10 10.88 -39.59 -0.43 -2.53 16 25 C -0.01 -0.11 11.51 -16.87 -0.19 -0.31 16 26 N -0.44 -4.24 2.78 -111.00 -0.31 -4.55 16 27 C 0.11 0.87 5.88 -2.99 -0.02 0.85 16 28 N -0.53 -14.68 7.89 -10.33 -0.08 -14.76 16 29 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 30 H 0.09 2.25 8.06 -52.49 -0.42 1.82 16 31 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.09 1.83 6.68 -52.48 -0.35 1.48 16 33 H 0.39 7.54 8.59 -40.82 -0.35 7.19 16 34 H 0.06 0.80 6.02 -51.93 -0.31 0.49 16 35 H 0.05 0.74 7.92 -51.93 -0.41 0.33 16 36 H 0.07 0.73 8.01 -51.93 -0.42 0.32 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.61 7.55 -51.93 -0.39 0.22 16 39 H 0.09 0.92 5.83 -51.93 -0.30 0.62 16 40 H 0.35 3.27 8.55 -39.29 -0.34 2.93 16 41 H 0.08 0.62 7.76 -51.93 -0.40 0.22 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 45 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.09 0.64 7.88 -51.93 -0.41 0.23 16 47 H 0.10 0.68 7.89 -51.93 -0.41 0.27 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -30.72 375.30 -12.56 -43.27 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -7.02 Total: 13.41 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -5.29 Total: -16.74 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.88 Total: -59.26 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.72 -12.56 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163057565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.887 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds