Wall clock time and date at job start Tue Mar 31 2020 14:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86805 * 119.99876 * 2 1 4 4 H 1.48501 * 109.46948 * 239.99660 * 3 2 1 5 5 H 1.48494 * 109.46833 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47157 * 119.99886 * 3 2 1 7 7 C 1.40031 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00353 * 179.97438 * 7 2 1 9 9 C 1.41315 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.40591 * 119.78595 * 180.02562 * 9 7 2 11 11 C 1.38344 * 119.15042 * 179.97438 * 10 9 7 12 12 C 1.38638 * 118.67969 * 359.97438 * 11 10 9 13 13 C 1.39756 * 119.49023 * 0.02562 * 12 11 10 14 14 N 1.38830 * 119.58011 * 179.97438 * 13 12 11 15 15 C 1.46504 * 120.00275 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.47150 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46761 * 179.97438 * 16 15 14 18 18 H 1.08995 * 109.17638 * 305.71726 * 17 16 15 19 19 C 1.50919 * 109.17558 * 65.00395 * 17 16 15 20 20 N 1.44762 * 116.64241 * 192.89032 * 19 17 16 21 21 C 1.47449 * 112.79094 * 286.14469 * 20 19 17 22 22 C 1.51956 * 107.02909 * 80.29423 * 21 20 19 23 23 C 1.34305 * 127.06080 * 115.56344 * 22 21 20 24 24 C 1.41150 * 107.11986 * 180.02562 * 23 22 21 25 25 C 1.35116 * 107.45160 * 359.65264 * 24 23 22 26 26 N 1.35885 * 107.94877 * 0.26621 * 25 24 23 27 27 C 1.47829 * 126.96438 * 179.86339 * 26 25 24 28 28 N 1.31970 * 120.83550 * 0.25004 * 13 12 11 29 29 H 0.96996 * 120.00143 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.42376 * 359.97169 * 10 9 7 31 31 H 1.07998 * 120.65758 * 179.97438 * 11 10 9 32 32 H 1.08003 * 120.25409 * 179.97438 * 12 11 10 33 33 H 0.97006 * 119.99885 * 179.97438 * 14 13 12 34 34 H 1.09001 * 109.46777 * 59.99507 * 15 14 13 35 35 H 1.09001 * 109.46817 * 300.00229 * 15 14 13 36 36 H 1.09001 * 109.47092 * 60.00278 * 16 15 14 37 37 H 1.08994 * 109.47152 * 299.99954 * 16 15 14 38 38 H 1.09004 * 108.01894 * 71.09120 * 19 17 16 39 39 H 1.08998 * 108.01434 * 314.69800 * 19 17 16 40 40 H 1.00899 * 110.99896 * 51.43341 * 20 19 17 41 41 H 1.09002 * 109.94518 * 320.91809 * 21 20 19 42 42 H 1.08999 * 109.94651 * 199.67417 * 21 20 19 43 43 H 1.08001 * 126.44033 * 359.89499 * 23 22 21 44 44 H 1.08008 * 126.27314 * 179.87269 * 24 23 22 45 45 H 1.07993 * 126.02832 * 180.30196 * 25 24 23 46 46 H 1.08996 * 109.94867 * 124.85630 * 27 26 25 47 47 H 1.09001 * 110.02225 * 3.63453 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3011 -2.4365 0.0005 10 6 2.0086 -3.6514 0.0016 11 6 1.3036 -4.8418 0.0022 12 6 -0.0820 -4.7944 0.0021 13 6 -0.7280 -3.5552 0.0010 14 7 -2.1155 -3.5056 0.0005 15 6 -2.8929 -4.7474 0.0005 16 6 -4.3861 -4.4143 0.0004 17 6 -5.1979 -5.7111 -0.0002 18 1 -4.8783 -6.3331 -0.8363 19 6 -4.9505 -6.4515 1.2914 20 7 -5.4028 -7.8254 1.3490 21 6 -6.8679 -7.9399 1.4685 22 6 -7.4441 -7.7524 0.0750 23 6 -8.1160 -8.6600 -0.6520 24 6 -8.4546 -8.0439 -1.8760 25 6 -7.9791 -6.7798 -1.8385 26 7 -7.3584 -6.6011 -0.6429 27 6 -6.6877 -5.3738 -0.1641 28 7 -0.0360 -2.4315 -0.0049 29 1 -0.4850 0.8400 -0.0004 30 1 3.0886 -3.6554 0.0020 31 1 1.8223 -5.7890 0.0026 32 1 -0.6577 -5.7083 0.0021 33 1 -2.5702 -2.6488 0.0001 34 1 -2.6504 -5.3278 0.8907 35 1 -2.6497 -5.3282 -0.8893 36 1 -4.6288 -3.8337 -0.8896 37 1 -4.6289 -3.8337 0.8904 38 1 -5.4408 -5.9013 2.0946 39 1 -3.8781 -6.4411 1.4858 40 1 -5.0622 -8.3516 0.5583 41 1 -7.2482 -7.1660 2.1352 42 1 -7.1339 -8.9253 1.8512 43 1 -8.3510 -9.6719 -0.3566 44 1 -8.9978 -8.4984 -2.6914 45 1 -8.0758 -6.0413 -2.6205 46 1 -7.1080 -5.0703 0.7947 47 1 -6.8096 -4.5731 -0.8936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163057565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:24 Heat of formation + Delta-G solvation = 71.817823 kcal Electronic energy + Delta-G solvation = -26725.461020 eV Core-core repulsion = 23100.752306 eV Total energy + Delta-G solvation = -3624.708714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.47029 -40.17263 -38.92154 -36.86853 -35.50880 -34.86913 -32.89211 -32.19143 -30.99753 -30.25642 -28.19569 -27.23342 -26.96262 -24.80686 -24.04163 -23.25082 -22.13325 -21.56289 -21.44667 -19.87657 -19.26259 -18.36550 -17.87000 -17.09856 -16.74453 -16.50489 -16.38409 -15.97375 -15.75052 -15.37662 -15.15958 -14.77807 -14.62825 -14.43271 -14.29938 -14.09905 -13.84789 -13.64222 -13.31464 -13.18664 -12.94663 -12.85336 -12.73210 -12.68889 -12.61153 -12.47469 -12.29083 -12.15741 -11.96137 -11.75129 -11.69207 -11.24660 -10.64420 -9.83667 -9.68967 -9.52164 -9.45164 -8.87643 -8.29699 -8.23271 -6.48099 1.06461 1.31400 1.34003 1.41529 1.53153 1.59512 1.96146 2.08782 2.25091 2.65124 2.92429 3.34389 3.48027 3.56118 3.78366 3.95403 4.03991 4.14660 4.17533 4.20206 4.33200 4.36792 4.39648 4.45156 4.48173 4.59313 4.68522 4.77279 4.77867 4.83347 4.86904 4.98422 5.00279 5.00377 5.08959 5.17829 5.24220 5.35769 5.38167 5.42123 5.71398 5.96284 6.02211 6.06787 6.09493 6.22672 6.27698 6.39413 6.46703 6.55739 6.83579 6.95570 7.22249 8.34026 8.50898 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.002229 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.562375 B =12557.331144 C =13207.799801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.026 3.974 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.472 4.472 8 H 0.086 0.914 9 C 0.258 3.742 10 C -0.344 4.344 11 C -0.031 4.031 12 C -0.368 4.368 13 C 0.394 3.606 14 N -0.734 5.734 15 C 0.142 3.858 16 C -0.106 4.106 17 C -0.113 4.113 18 H 0.068 0.932 19 C 0.054 3.946 20 N -0.681 5.681 21 C 0.131 3.869 22 C -0.036 4.036 23 C -0.207 4.207 24 C -0.225 4.225 25 C -0.021 4.021 26 N -0.444 5.444 27 C 0.108 3.892 28 N -0.565 5.565 29 H 0.276 0.724 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.394 0.606 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.346 0.654 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.177 0.823 46 H 0.098 0.902 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.638 -10.347 0.332 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.503 4.503 8 H 0.104 0.896 9 C 0.131 3.869 10 C -0.367 4.367 11 C -0.055 4.055 12 C -0.393 4.393 13 C 0.153 3.847 14 N -0.370 5.370 15 C 0.017 3.983 16 C -0.145 4.145 17 C -0.135 4.135 18 H 0.087 0.913 19 C -0.076 4.076 20 N -0.308 5.308 21 C 0.002 3.998 22 C -0.149 4.149 23 C -0.233 4.233 24 C -0.250 4.250 25 C -0.152 4.152 26 N -0.120 5.120 27 C -0.012 4.012 28 N -0.288 5.288 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.228 0.772 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.165 0.835 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.194 0.806 46 H 0.116 0.884 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.024 -9.376 1.144 20.349 hybrid contribution 0.479 0.307 -1.219 1.345 sum -17.545 -9.069 -0.076 19.751 Atomic orbital electron populations 1.70229 1.08712 1.28752 1.29606 1.26950 0.95785 1.04304 0.92548 0.85226 0.78651 0.75595 0.79950 1.18495 1.19208 1.18435 1.19911 0.94611 0.90515 1.45310 0.89600 1.18688 0.87763 0.93175 0.87322 1.21694 0.98993 0.93797 1.22251 1.21011 0.93810 0.97162 0.93552 1.20934 0.94942 0.96083 1.27385 1.18971 0.86123 0.90198 0.89411 1.44295 1.01358 1.08382 1.82918 1.21284 0.90620 0.85916 1.00450 1.21564 0.91969 0.96939 1.03988 1.21682 0.93930 0.97389 1.00529 0.91340 1.21416 1.02079 0.88470 0.95648 1.60166 1.10836 1.11237 1.48602 1.21179 0.85711 1.04082 0.88823 1.21744 1.07357 0.87504 0.98316 1.20872 1.06159 1.00253 0.96008 1.21270 1.08625 0.95128 0.99972 1.22185 1.03064 0.99624 0.90337 1.44468 1.42655 1.11040 1.13842 1.22571 0.91084 0.85178 1.02388 1.68190 1.07933 1.26095 1.26549 0.91296 0.88008 0.85435 0.86629 0.77162 0.92458 0.93678 0.90397 0.89855 0.90681 0.90724 0.83539 0.89754 0.87234 0.84029 0.84084 0.80576 0.88395 0.87198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.44 11.46 21.84 0.25 -40.19 16 2 C 0.03 1.34 5.50 85.29 0.47 1.81 16 3 Si 0.99 38.53 29.56 68.60 2.03 40.56 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 7 C -0.47 -26.34 9.14 23.46 0.21 -26.13 16 8 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 9 C 0.26 14.84 6.55 40.19 0.26 15.10 16 10 C -0.34 -17.83 9.83 22.87 0.22 -17.61 16 11 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 12 C -0.37 -16.65 9.34 22.73 0.21 -16.44 16 13 C 0.39 19.17 7.65 133.40 1.02 20.19 16 14 N -0.73 -28.00 5.72 -345.00 -1.97 -29.98 16 15 C 0.14 3.87 4.64 86.38 0.40 4.27 16 16 C -0.11 -1.96 4.73 30.59 0.14 -1.81 16 17 C -0.11 -1.79 2.15 -11.26 -0.02 -1.82 16 18 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 19 C 0.05 0.90 5.08 86.03 0.44 1.34 16 20 N -0.68 -11.39 6.70 -523.13 -3.50 -14.89 16 21 C 0.13 1.95 6.60 85.85 0.57 2.52 16 22 C -0.04 -0.65 5.97 41.43 0.25 -0.40 16 23 C -0.21 -4.00 10.81 22.09 0.24 -3.76 16 24 C -0.23 -4.34 10.88 22.27 0.24 -4.10 16 25 C -0.02 -0.39 11.51 83.35 0.96 0.57 16 26 N -0.44 -7.75 2.78 -505.10 -1.40 -9.15 16 27 C 0.11 1.48 5.88 86.34 0.51 1.99 16 28 N -0.56 -31.90 7.89 -186.59 -1.47 -33.37 16 29 H 0.28 13.42 8.29 -92.71 -0.77 12.65 16 30 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 31 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 32 H 0.12 4.52 6.68 -2.91 -0.02 4.50 16 33 H 0.39 14.99 8.59 -92.70 -0.80 14.19 16 34 H 0.06 1.58 6.02 -2.39 -0.01 1.56 16 35 H 0.04 1.29 7.92 -2.39 -0.02 1.27 16 36 H 0.08 1.41 8.01 -2.39 -0.02 1.39 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.17 7.55 -2.38 -0.02 1.15 16 39 H 0.07 1.45 5.83 -2.39 -0.01 1.44 16 40 H 0.35 6.08 8.55 -89.69 -0.77 5.31 16 41 H 0.08 1.16 7.76 -2.39 -0.02 1.14 16 42 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 44 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 45 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 46 H 0.10 1.16 7.88 -2.39 -0.02 1.14 16 47 H 0.11 1.24 7.89 -2.39 -0.02 1.22 16 Total: -1.00 -67.54 375.30 -0.29 -67.83 By element: Atomic # 1 Polarization: 45.23 SS G_CDS: -0.57 Total: 44.66 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 6.35 Total: -25.48 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -8.10 Total: -127.57 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -67.54 -0.29 -67.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163057565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.651 kcal (2) G-P(sol) polarization free energy of solvation -67.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds