Wall clock time and date at job start Tue Mar 31 2020 14:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48502 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47056 * 299.99652 * 3 2 1 6 6 H 1.48500 * 109.47005 * 60.00054 * 3 2 1 7 7 C 1.39928 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00085 * 162.93577 * 7 2 1 9 9 C 1.41428 * 120.00037 * 342.93522 * 7 2 1 10 10 C 1.40793 * 120.62263 * 155.81641 * 9 7 2 11 11 N 1.31472 * 120.56274 * 179.97438 * 10 9 7 12 12 C 1.32018 * 122.05826 * 359.69489 * 11 10 9 13 13 C 1.39301 * 121.20584 * 0.59536 * 12 11 10 14 14 N 1.39721 * 120.36024 * 179.69793 * 13 12 11 15 15 C 1.46495 * 120.00019 * 359.72245 * 14 13 12 16 16 C 1.52997 * 109.47069 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47194 * 180.02562 * 16 15 14 18 18 H 1.09003 * 109.17202 * 304.28089 * 17 16 15 19 19 C 1.50887 * 109.19015 * 63.47850 * 17 16 15 20 20 N 1.44761 * 116.66235 * 192.86541 * 19 17 16 21 21 C 1.47458 * 112.79207 * 286.16266 * 20 19 17 22 22 C 1.51961 * 107.01999 * 80.30801 * 21 20 19 23 23 C 1.34298 * 127.06376 * 115.26706 * 22 21 20 24 24 C 1.41154 * 107.11967 * 179.97438 * 23 22 21 25 25 C 1.35121 * 107.44738 * 0.02562 * 24 23 22 26 26 N 1.35879 * 107.95097 * 0.02859 * 25 24 23 27 27 C 1.47837 * 126.96041 * 179.88125 * 26 25 24 28 28 C 1.38694 * 119.27506 * 359.42582 * 13 12 11 29 29 H 0.97006 * 119.99586 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.72272 * 359.95085 * 10 9 7 31 31 H 1.07994 * 119.39817 * 180.29609 * 12 11 10 32 32 H 0.96997 * 119.99423 * 179.72708 * 14 13 12 33 33 H 1.09005 * 109.46823 * 60.00417 * 15 14 13 34 34 H 1.08998 * 109.47476 * 300.00556 * 15 14 13 35 35 H 1.08996 * 109.47205 * 60.00290 * 16 15 14 36 36 H 1.09005 * 109.47225 * 300.00160 * 16 15 14 37 37 H 1.08997 * 107.98560 * 71.07526 * 19 17 16 38 38 H 1.09000 * 108.02580 * 314.69590 * 19 17 16 39 39 H 1.00901 * 110.99631 * 160.87175 * 20 19 17 40 40 H 1.09001 * 109.93935 * 199.68485 * 21 20 19 41 41 H 1.08991 * 109.94339 * 320.92839 * 21 20 19 42 42 H 1.07998 * 126.44436 * 359.94799 * 23 22 21 43 43 H 1.07999 * 126.27471 * 180.02562 * 24 23 22 44 44 H 1.07992 * 126.02383 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.94395 * 3.62265 * 27 26 25 46 46 H 1.08999 * 109.94721 * 124.79330 * 27 26 25 47 47 H 1.07998 * 120.93204 * 180.29355 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0523 -1.2325 -0.2739 9 6 1.3475 -2.4095 0.3605 10 6 1.8226 -3.6547 -0.0933 11 7 1.2080 -4.7674 0.2424 12 6 0.1366 -4.7709 1.0138 13 6 -0.4047 -3.5840 1.5024 14 7 -1.5430 -3.6078 2.3124 15 6 -2.1773 -4.8852 2.6470 16 6 -3.3947 -4.6320 3.5383 17 6 -4.0569 -5.9662 3.8884 18 1 -4.3036 -6.4957 2.9682 19 6 -3.0935 -6.8012 4.6955 20 7 -3.4333 -8.1974 4.8709 21 6 -4.5381 -8.4008 5.8260 22 6 -5.8308 -8.1253 5.0762 23 6 -6.8087 -9.0030 4.7991 24 6 -7.8077 -8.3020 4.0900 25 6 -7.3930 -7.0221 3.9647 26 7 -6.1806 -6.9137 4.5684 27 6 -5.3467 -5.6977 4.6761 28 6 0.2018 -2.3789 1.1808 29 1 -0.4850 0.8401 -0.0004 30 1 2.6991 -3.6963 -0.7230 31 1 -0.3315 -5.7106 1.2667 32 1 -1.9131 -2.7785 2.6530 33 1 -1.4641 -5.5172 3.1764 34 1 -2.4951 -5.3840 1.7315 35 1 -4.1077 -4.0002 3.0087 36 1 -3.0773 -4.1330 4.4540 37 1 -3.0027 -6.3498 5.6834 38 1 -2.1171 -6.7498 4.2138 39 1 -2.6224 -8.7363 5.1357 40 1 -4.5309 -9.4285 6.1894 41 1 -4.4387 -7.7090 6.6623 42 1 -6.8272 -10.0489 5.0679 43 1 -8.7337 -8.7132 3.7160 44 1 -7.9305 -6.2257 3.4717 45 1 -5.8741 -4.8460 4.2465 46 1 -5.1109 -5.4999 5.7218 47 1 -0.1925 -1.4433 1.5489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163060684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:15 Heat of formation + Delta-G solvation = 79.418926 kcal Electronic energy + Delta-G solvation = -26601.338241 eV Core-core repulsion = 22976.959135 eV Total energy + Delta-G solvation = -3624.379106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.58586 -38.61643 -37.91595 -35.71969 -34.38017 -33.89628 -31.92421 -30.31104 -29.96381 -28.91385 -26.56365 -26.30646 -25.60490 -23.98249 -22.98374 -21.69780 -20.67369 -20.54794 -20.31907 -19.03240 -17.40696 -17.30820 -16.53832 -15.90144 -15.78739 -15.41306 -15.03215 -14.91330 -14.84313 -14.61304 -14.21227 -13.76079 -13.54340 -13.18553 -13.01114 -12.95333 -12.55411 -12.39890 -12.31576 -12.14570 -11.82603 -11.69702 -11.57936 -11.51341 -11.46578 -11.19631 -11.02187 -10.94579 -10.81837 -10.53047 -9.89658 -9.47478 -9.33214 -8.80469 -8.64974 -8.10628 -8.06196 -7.76271 -6.85964 -6.41070 -4.47823 2.17360 2.71858 2.77796 2.94452 3.02478 3.08160 3.10646 3.23194 3.84075 3.86776 4.07037 4.30102 4.42059 4.58339 4.64172 4.74463 4.84242 4.90865 5.01118 5.12237 5.15725 5.20213 5.24255 5.32837 5.48707 5.56034 5.60592 5.66802 5.74953 5.86740 6.07869 6.12776 6.15687 6.20597 6.25759 6.55705 6.65094 6.70806 6.88426 6.93890 7.06574 7.08213 7.15103 7.18689 7.28940 7.56210 7.70730 7.95593 8.18500 8.43061 8.60810 8.75153 8.85756 9.75097 10.09456 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023210 B = 0.002169 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.104953 B =12907.924049 C =13538.122004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.451 4.451 8 H 0.082 0.918 9 C 0.095 3.905 10 C -0.050 4.050 11 N -0.446 5.446 12 C -0.097 4.097 13 C 0.174 3.826 14 N -0.757 5.757 15 C 0.136 3.864 16 C -0.122 4.122 17 C -0.095 4.095 18 H 0.091 0.909 19 C 0.063 3.937 20 N -0.693 5.693 21 C 0.128 3.872 22 C 0.028 3.972 23 C -0.195 4.195 24 C -0.205 4.205 25 C -0.016 4.016 26 N -0.439 5.439 27 C 0.109 3.891 28 C -0.209 4.209 29 H 0.280 0.720 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.390 0.610 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.084 0.916 39 H 0.354 0.646 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.158 0.842 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.901 -9.025 12.893 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.481 4.481 8 H 0.101 0.899 9 C 0.089 3.911 10 C -0.215 4.215 11 N -0.153 5.153 12 C -0.256 4.256 13 C 0.073 3.927 14 N -0.391 5.391 15 C 0.011 3.989 16 C -0.161 4.161 17 C -0.115 4.115 18 H 0.110 0.890 19 C -0.066 4.066 20 N -0.326 5.326 21 C -0.001 4.001 22 C -0.085 4.085 23 C -0.220 4.220 24 C -0.230 4.230 25 C -0.146 4.146 26 N -0.115 5.115 27 C -0.012 4.012 28 C -0.240 4.240 29 H 0.090 0.910 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.223 0.777 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.102 0.898 39 H 0.174 0.826 40 H 0.113 0.887 41 H 0.062 0.938 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.176 0.824 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.029 -9.565 12.092 20.185 hybrid contribution 0.083 2.198 1.091 2.455 sum -12.946 -7.367 13.182 19.891 Atomic orbital electron populations 1.69848 1.07655 1.29081 1.34798 1.25950 0.94748 1.01441 0.92124 0.86248 0.81108 0.80779 0.78543 1.18236 1.19937 1.19763 1.19579 0.97968 0.90871 1.39712 0.89944 1.18284 0.91059 0.93419 0.88293 1.22346 1.03582 0.88145 1.07418 1.66832 1.06874 1.31968 1.09610 1.21227 1.00260 0.94456 1.09699 1.18666 0.87033 0.95560 0.91473 1.44319 1.30634 1.06440 1.57684 1.21118 0.92816 0.87512 0.97488 1.21734 0.97887 0.96011 1.00452 1.21166 0.93830 0.96344 1.00208 0.89034 1.21164 0.99256 0.87670 0.98530 1.58841 1.11643 1.10250 1.51842 1.20822 0.86651 1.01596 0.91035 1.20316 0.97686 0.85473 1.04978 1.20490 0.95678 0.98802 1.07009 1.20937 1.01242 0.93513 1.07324 1.21736 0.88271 0.99230 1.05382 1.44239 1.15728 1.08525 1.42990 1.22415 0.91370 0.85964 1.01448 1.21075 1.01852 0.95008 1.06060 0.90961 0.85931 0.86863 0.77710 0.92909 0.92955 0.90696 0.91142 0.95753 0.89772 0.82572 0.88732 0.93831 0.85072 0.85037 0.82434 0.88602 0.89986 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.77 10.93 55.55 0.61 -19.16 16 2 C 0.08 1.85 5.18 -17.35 -0.09 1.76 16 3 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.45 -11.71 9.08 -37.74 -0.34 -12.05 16 8 H 0.08 2.04 7.90 -52.48 -0.41 1.63 16 9 C 0.09 2.52 5.59 -106.69 -0.60 1.93 16 10 C -0.05 -1.30 10.97 -16.74 -0.18 -1.48 16 11 N -0.45 -11.34 10.33 -12.37 -0.13 -11.47 16 12 C -0.10 -2.30 10.49 -17.08 -0.18 -2.48 16 13 C 0.17 3.96 6.67 -83.70 -0.56 3.40 16 14 N -0.76 -13.37 5.74 -58.58 -0.34 -13.71 16 15 C 0.14 1.88 4.66 -4.05 -0.02 1.86 16 16 C -0.12 -1.21 4.74 -26.73 -0.13 -1.34 16 17 C -0.10 -0.90 2.17 -91.42 -0.20 -1.10 16 18 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 19 C 0.06 0.59 5.07 -6.03 -0.03 0.55 16 20 N -0.69 -6.31 6.51 -116.72 -0.76 -7.07 16 21 C 0.13 1.09 6.54 -4.05 -0.03 1.06 16 22 C 0.03 0.30 6.22 -81.54 -0.51 -0.20 16 23 C -0.19 -2.17 10.81 -39.87 -0.43 -2.60 16 24 C -0.21 -2.24 10.88 -39.58 -0.43 -2.67 16 25 C -0.02 -0.17 11.51 -16.87 -0.19 -0.36 16 26 N -0.44 -4.61 2.78 -111.07 -0.31 -4.92 16 27 C 0.11 0.93 5.87 -3.05 -0.02 0.91 16 28 C -0.21 -5.33 8.67 -38.39 -0.33 -5.66 16 29 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 30 H 0.12 2.95 8.06 -52.49 -0.42 2.53 16 31 H 0.11 2.41 6.73 -52.49 -0.35 2.05 16 32 H 0.39 6.39 8.49 -40.82 -0.35 6.04 16 33 H 0.05 0.74 6.00 -51.93 -0.31 0.42 16 34 H 0.05 0.79 7.97 -51.93 -0.41 0.38 16 35 H 0.07 0.72 8.04 -51.93 -0.42 0.31 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.02 0.21 7.55 -51.93 -0.39 -0.18 16 38 H 0.08 0.84 5.75 -51.93 -0.30 0.54 16 39 H 0.35 2.58 8.89 -39.29 -0.35 2.23 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.04 0.35 7.76 -51.93 -0.40 -0.06 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 45 H 0.10 0.69 7.91 -51.93 -0.41 0.28 16 46 H 0.08 0.63 7.88 -51.93 -0.41 0.22 16 47 H 0.12 3.20 6.22 -52.49 -0.33 2.88 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -30.34 374.29 -11.52 -41.86 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -6.94 Total: 14.21 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -4.26 Total: -18.46 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.93 Total: -56.33 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.34 -11.52 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163060684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.280 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds