Wall clock time and date at job start Tue Mar 31 2020 14:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48494 * 109.47162 * 270.00194 * 3 2 1 5 5 H 1.48503 * 109.46912 * 30.00027 * 3 2 1 6 6 H 1.48500 * 109.47355 * 149.99514 * 3 2 1 7 7 C 1.39933 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00445 * 162.93269 * 7 2 1 9 9 C 1.41425 * 119.99350 * 342.94084 * 7 2 1 10 10 C 1.40808 * 120.62068 * 155.80169 * 9 7 2 11 11 N 1.31467 * 120.56398 * 179.97438 * 10 9 7 12 12 C 1.32024 * 122.05696 * 359.69437 * 11 10 9 13 13 C 1.39292 * 121.20622 * 0.59975 * 12 11 10 14 14 N 1.39720 * 120.36260 * 179.69412 * 13 12 11 15 15 C 1.46499 * 119.99696 * 359.72594 * 14 13 12 16 16 C 1.53005 * 109.47082 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47135 * 179.97438 * 16 15 14 18 18 H 1.09004 * 109.17405 * 54.29206 * 17 16 15 19 19 C 1.50924 * 109.18439 * 295.00470 * 17 16 15 20 20 N 1.44755 * 116.64193 * 167.11180 * 19 17 16 21 21 C 1.47459 * 112.79687 * 73.86476 * 20 19 17 22 22 C 1.51959 * 107.02401 * 279.69418 * 21 20 19 23 23 C 1.34298 * 127.06894 * 244.62221 * 22 21 20 24 24 C 1.41158 * 107.11949 * 180.15472 * 23 22 21 25 25 C 1.35121 * 107.44826 * 359.97269 * 24 23 22 26 26 N 1.35879 * 107.94963 * 359.97438 * 25 24 23 27 27 C 1.47829 * 126.95429 * 180.02562 * 26 25 24 28 28 C 1.38698 * 119.27765 * 359.42097 * 13 12 11 29 29 H 0.97004 * 120.00334 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.71872 * 359.95427 * 10 9 7 31 31 H 1.07994 * 119.39308 * 180.29253 * 12 11 10 32 32 H 0.96998 * 120.00310 * 179.72510 * 14 13 12 33 33 H 1.09003 * 109.47640 * 59.99808 * 15 14 13 34 34 H 1.09004 * 109.46861 * 299.99695 * 15 14 13 35 35 H 1.08999 * 109.47128 * 59.99977 * 16 15 14 36 36 H 1.08996 * 109.46888 * 299.99800 * 16 15 14 37 37 H 1.09001 * 108.01388 * 45.29919 * 19 17 16 38 38 H 1.08999 * 108.00842 * 288.91729 * 19 17 16 39 39 H 1.00900 * 110.99588 * 199.14936 * 20 19 17 40 40 H 1.09002 * 109.94429 * 39.07058 * 21 20 19 41 41 H 1.09004 * 109.94465 * 160.31430 * 21 20 19 42 42 H 1.07999 * 126.43865 * 0.14912 * 23 22 21 43 43 H 1.08001 * 126.27424 * 179.97438 * 24 23 22 44 44 H 1.08003 * 126.02217 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.95439 * 356.43992 * 27 26 25 46 46 H 1.08997 * 110.01757 * 235.22452 * 27 26 25 47 47 H 1.07995 * 120.93295 * 180.25667 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0522 -1.2326 -0.2739 9 6 1.3474 -2.4094 0.3604 10 6 1.8224 -3.6548 -0.0937 11 7 1.2078 -4.7674 0.2419 12 6 0.1364 -4.7709 1.0134 13 6 -0.4048 -3.5842 1.5022 14 7 -1.5429 -3.6079 2.3122 15 6 -2.1772 -4.8854 2.6468 16 6 -3.3940 -4.6323 3.5393 17 6 -4.0568 -5.9663 3.8883 18 1 -3.3127 -6.6324 4.3250 19 6 -4.6044 -6.5925 2.6289 20 7 -5.0079 -7.9799 2.7163 21 6 -6.2718 -8.1619 3.4539 22 6 -5.9339 -8.1115 4.9346 23 6 -6.0583 -9.1067 5.8276 24 6 -5.6299 -8.6022 7.0744 25 6 -5.2611 -7.3160 6.8859 26 7 -5.4465 -7.0152 5.5739 27 6 -5.1760 -5.7214 4.9119 28 6 0.2019 -2.3790 1.1807 29 1 -0.4851 0.8401 -0.0004 30 1 2.6989 -3.6963 -0.7234 31 1 -0.3317 -5.7107 1.2661 32 1 -1.9131 -2.7786 2.6531 33 1 -1.4642 -5.5176 3.1760 34 1 -2.4952 -5.3839 1.7312 35 1 -4.1072 -4.0000 3.0106 36 1 -3.0756 -4.1339 4.4549 37 1 -3.8428 -6.5110 1.8533 38 1 -5.4685 -6.0093 2.3108 39 1 -5.0603 -8.3995 1.8002 40 1 -6.9670 -7.3606 3.2037 41 1 -6.7114 -9.1279 3.2055 42 1 -6.4184 -10.1054 5.6292 43 1 -5.6021 -9.1447 8.0079 44 1 -4.8844 -6.6456 7.6443 45 1 -4.8520 -4.9869 5.6492 46 1 -6.0732 -5.3673 4.4042 47 1 -0.1927 -1.4434 1.5485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163060685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:19 Heat of formation + Delta-G solvation = 79.128350 kcal Electronic energy + Delta-G solvation = -26600.020331 eV Core-core repulsion = 22975.628625 eV Total energy + Delta-G solvation = -3624.391706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.58509 -38.60967 -37.90684 -35.71880 -34.37546 -33.89653 -31.92158 -30.31142 -29.96470 -28.91226 -26.56373 -26.29836 -25.60427 -23.98418 -22.96876 -21.69330 -20.67457 -20.54622 -20.32942 -19.03331 -17.40209 -17.30682 -16.53127 -15.90291 -15.78027 -15.41112 -15.02894 -14.91899 -14.84645 -14.60048 -14.21861 -13.75504 -13.54420 -13.18033 -13.00821 -12.95721 -12.56181 -12.38113 -12.28587 -12.17632 -11.82996 -11.70453 -11.58581 -11.50323 -11.42929 -11.21054 -11.00974 -10.96435 -10.79606 -10.56257 -9.91657 -9.47077 -9.32141 -8.80055 -8.65117 -8.10876 -8.06074 -7.76113 -6.86047 -6.40957 -4.47755 2.17205 2.73248 2.77617 2.94207 3.01855 3.06056 3.11415 3.23909 3.84409 3.86653 4.07157 4.30292 4.42156 4.58489 4.64579 4.74460 4.84385 4.91004 5.01272 5.12448 5.16031 5.20281 5.24713 5.33273 5.49322 5.56133 5.60350 5.66598 5.75185 5.86446 6.08198 6.13329 6.15520 6.20326 6.25470 6.55900 6.65275 6.71337 6.88375 6.93803 7.06922 7.08061 7.15181 7.18458 7.28746 7.56290 7.70845 7.95500 8.18451 8.43191 8.60668 8.75098 8.85862 9.75263 10.09315 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.002156 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.789447 B =12986.842956 C =13480.474054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.451 4.451 8 H 0.082 0.918 9 C 0.095 3.905 10 C -0.050 4.050 11 N -0.446 5.446 12 C -0.098 4.098 13 C 0.174 3.826 14 N -0.757 5.757 15 C 0.136 3.864 16 C -0.122 4.122 17 C -0.095 4.095 18 H 0.091 0.909 19 C 0.063 3.937 20 N -0.693 5.693 21 C 0.128 3.872 22 C 0.029 3.971 23 C -0.195 4.195 24 C -0.205 4.205 25 C -0.016 4.016 26 N -0.439 5.439 27 C 0.109 3.891 28 C -0.210 4.210 29 H 0.280 0.720 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.390 0.610 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.025 0.975 39 H 0.354 0.646 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.158 0.842 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.126 -8.710 9.857 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.481 4.481 8 H 0.100 0.900 9 C 0.090 3.910 10 C -0.215 4.215 11 N -0.153 5.153 12 C -0.257 4.257 13 C 0.073 3.927 14 N -0.391 5.391 15 C 0.011 3.989 16 C -0.161 4.161 17 C -0.115 4.115 18 H 0.110 0.890 19 C -0.066 4.066 20 N -0.326 5.326 21 C -0.001 4.001 22 C -0.084 4.084 23 C -0.220 4.220 24 C -0.230 4.230 25 C -0.146 4.146 26 N -0.115 5.115 27 C -0.012 4.012 28 C -0.240 4.240 29 H 0.091 0.909 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.223 0.777 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.043 0.957 39 H 0.174 0.826 40 H 0.062 0.938 41 H 0.113 0.887 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.176 0.824 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.626 -9.335 9.923 19.988 hybrid contribution -0.787 2.319 -0.122 2.452 sum -15.413 -7.016 9.801 19.566 Atomic orbital electron populations 1.69832 1.07662 1.29181 1.34758 1.25944 0.94746 1.01430 0.92102 0.86302 0.80685 0.80400 0.79318 1.19390 1.20147 1.18341 1.19537 0.97939 0.90887 1.39782 0.89992 1.18278 0.91060 0.93401 0.88285 1.22349 1.03583 0.88148 1.07425 1.66833 1.06838 1.31953 1.09655 1.21226 1.00282 0.94451 1.09699 1.18663 0.87051 0.95556 0.91448 1.44319 1.30653 1.06435 1.57672 1.21113 0.92857 0.87539 0.97406 1.21737 0.97563 0.96044 1.00753 1.21196 0.97336 0.97473 0.95504 0.89045 1.21164 0.99926 0.87835 0.97694 1.58845 1.32678 1.17258 1.23791 1.20827 0.89795 1.01753 0.87754 1.20319 1.06049 0.87776 0.94265 1.20492 1.09954 0.98592 0.92955 1.20937 1.08907 0.94807 0.98364 1.21733 1.09430 0.98144 0.85342 1.44236 1.49277 1.10286 1.07674 1.22442 0.99052 0.83571 0.96160 1.21072 1.01851 0.95013 1.06074 0.90917 0.85936 0.86860 0.77711 0.92985 0.92906 0.91075 0.90766 0.89800 0.95714 0.82563 0.93816 0.88727 0.85070 0.85042 0.82444 0.88613 0.89972 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.73 10.93 55.55 0.61 -19.12 16 2 C 0.08 1.86 5.18 -17.35 -0.09 1.77 16 3 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 7 C -0.45 -11.72 9.08 -37.73 -0.34 -12.06 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 9 C 0.09 2.53 5.59 -106.69 -0.60 1.94 16 10 C -0.05 -1.30 10.97 -16.74 -0.18 -1.48 16 11 N -0.45 -11.35 10.33 -12.37 -0.13 -11.48 16 12 C -0.10 -2.30 10.49 -17.08 -0.18 -2.48 16 13 C 0.17 3.97 6.66 -83.70 -0.56 3.41 16 14 N -0.76 -13.38 5.74 -58.57 -0.34 -13.72 16 15 C 0.14 1.89 4.68 -4.04 -0.02 1.87 16 16 C -0.12 -1.21 4.73 -26.73 -0.13 -1.34 16 17 C -0.09 -0.90 2.16 -91.33 -0.20 -1.10 16 18 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 19 C 0.06 0.59 5.07 -6.02 -0.03 0.56 16 20 N -0.69 -6.37 6.51 -116.69 -0.76 -7.13 16 21 C 0.13 1.10 6.53 -4.05 -0.03 1.07 16 22 C 0.03 0.31 6.22 -81.54 -0.51 -0.20 16 23 C -0.19 -2.16 10.81 -39.86 -0.43 -2.59 16 24 C -0.21 -2.23 10.88 -39.58 -0.43 -2.66 16 25 C -0.02 -0.17 11.51 -16.87 -0.19 -0.36 16 26 N -0.44 -4.59 2.78 -111.00 -0.31 -4.90 16 27 C 0.11 0.93 5.88 -2.98 -0.02 0.91 16 28 C -0.21 -5.33 8.67 -38.39 -0.33 -5.66 16 29 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 30 H 0.12 2.95 8.06 -52.49 -0.42 2.53 16 31 H 0.11 2.41 6.73 -52.49 -0.35 2.06 16 32 H 0.39 6.39 8.49 -40.82 -0.35 6.04 16 33 H 0.05 0.77 7.95 -51.93 -0.41 0.36 16 34 H 0.05 0.76 6.06 -51.93 -0.31 0.44 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16 37 H 0.08 0.85 5.83 -51.93 -0.30 0.55 16 38 H 0.02 0.22 7.55 -51.93 -0.39 -0.17 16 39 H 0.35 2.63 8.89 -39.29 -0.35 2.28 16 40 H 0.04 0.35 7.76 -51.93 -0.40 -0.05 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 45 H 0.10 0.68 7.89 -51.93 -0.41 0.27 16 46 H 0.08 0.64 7.88 -51.93 -0.41 0.23 16 47 H 0.12 3.20 6.22 -52.49 -0.33 2.88 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -30.28 374.39 -11.52 -41.80 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -6.94 Total: 14.27 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -4.26 Total: -18.41 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.92 Total: -56.36 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.28 -11.52 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163060685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.925 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds