Wall clock time and date at job start Tue Mar 31 2020 14:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48494 * 109.47162 * 270.00194 * 3 2 1 5 5 H 1.48503 * 109.46912 * 30.00027 * 3 2 1 6 6 H 1.48500 * 109.47355 * 149.99514 * 3 2 1 7 7 C 1.39933 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00445 * 162.93269 * 7 2 1 9 9 C 1.41425 * 119.99350 * 342.94084 * 7 2 1 10 10 C 1.40808 * 120.62068 * 155.80169 * 9 7 2 11 11 N 1.31467 * 120.56398 * 179.97438 * 10 9 7 12 12 C 1.32024 * 122.05696 * 359.69437 * 11 10 9 13 13 C 1.39292 * 121.20622 * 0.59975 * 12 11 10 14 14 N 1.39720 * 120.36260 * 179.69412 * 13 12 11 15 15 C 1.46499 * 119.99696 * 359.72594 * 14 13 12 16 16 C 1.53005 * 109.47082 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47135 * 179.97438 * 16 15 14 18 18 H 1.09004 * 109.17405 * 54.29206 * 17 16 15 19 19 C 1.50924 * 109.18439 * 295.00470 * 17 16 15 20 20 N 1.44755 * 116.64193 * 167.11180 * 19 17 16 21 21 C 1.47459 * 112.79687 * 73.86476 * 20 19 17 22 22 C 1.51959 * 107.02401 * 279.69418 * 21 20 19 23 23 C 1.34298 * 127.06894 * 244.62221 * 22 21 20 24 24 C 1.41158 * 107.11949 * 180.15472 * 23 22 21 25 25 C 1.35121 * 107.44826 * 359.97269 * 24 23 22 26 26 N 1.35879 * 107.94963 * 359.97438 * 25 24 23 27 27 C 1.47829 * 126.95429 * 180.02562 * 26 25 24 28 28 C 1.38698 * 119.27765 * 359.42097 * 13 12 11 29 29 H 0.97004 * 120.00334 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.71872 * 359.95427 * 10 9 7 31 31 H 1.07994 * 119.39308 * 180.29253 * 12 11 10 32 32 H 0.96998 * 120.00310 * 179.72510 * 14 13 12 33 33 H 1.09003 * 109.47640 * 59.99808 * 15 14 13 34 34 H 1.09004 * 109.46861 * 299.99695 * 15 14 13 35 35 H 1.08999 * 109.47128 * 59.99977 * 16 15 14 36 36 H 1.08996 * 109.46888 * 299.99800 * 16 15 14 37 37 H 1.09001 * 108.01388 * 45.29919 * 19 17 16 38 38 H 1.08999 * 108.00842 * 288.91729 * 19 17 16 39 39 H 1.00900 * 110.99588 * 199.14936 * 20 19 17 40 40 H 1.09002 * 109.94429 * 39.07058 * 21 20 19 41 41 H 1.09004 * 109.94465 * 160.31430 * 21 20 19 42 42 H 1.07999 * 126.43865 * 0.14912 * 23 22 21 43 43 H 1.08001 * 126.27424 * 179.97438 * 24 23 22 44 44 H 1.08003 * 126.02217 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.95439 * 356.43992 * 27 26 25 46 46 H 1.08997 * 110.01757 * 235.22452 * 27 26 25 47 47 H 1.07995 * 120.93295 * 180.25667 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0522 -1.2326 -0.2739 9 6 1.3474 -2.4094 0.3604 10 6 1.8224 -3.6548 -0.0937 11 7 1.2078 -4.7674 0.2419 12 6 0.1364 -4.7709 1.0134 13 6 -0.4048 -3.5842 1.5022 14 7 -1.5429 -3.6079 2.3122 15 6 -2.1772 -4.8854 2.6468 16 6 -3.3940 -4.6323 3.5393 17 6 -4.0568 -5.9663 3.8883 18 1 -3.3127 -6.6324 4.3250 19 6 -4.6044 -6.5925 2.6289 20 7 -5.0079 -7.9799 2.7163 21 6 -6.2718 -8.1619 3.4539 22 6 -5.9339 -8.1115 4.9346 23 6 -6.0583 -9.1067 5.8276 24 6 -5.6299 -8.6022 7.0744 25 6 -5.2611 -7.3160 6.8859 26 7 -5.4465 -7.0152 5.5739 27 6 -5.1760 -5.7214 4.9119 28 6 0.2019 -2.3790 1.1807 29 1 -0.4851 0.8401 -0.0004 30 1 2.6989 -3.6963 -0.7234 31 1 -0.3317 -5.7107 1.2661 32 1 -1.9131 -2.7786 2.6531 33 1 -1.4642 -5.5176 3.1760 34 1 -2.4952 -5.3839 1.7312 35 1 -4.1072 -4.0000 3.0106 36 1 -3.0756 -4.1339 4.4549 37 1 -3.8428 -6.5110 1.8533 38 1 -5.4685 -6.0093 2.3108 39 1 -5.0603 -8.3995 1.8002 40 1 -6.9670 -7.3606 3.2037 41 1 -6.7114 -9.1279 3.2055 42 1 -6.4184 -10.1054 5.6292 43 1 -5.6021 -9.1447 8.0079 44 1 -4.8844 -6.6456 7.6443 45 1 -4.8520 -4.9869 5.6492 46 1 -6.0732 -5.3673 4.4042 47 1 -0.1927 -1.4434 1.5485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163060685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:18 Heat of formation + Delta-G solvation = 60.645758 kcal Electronic energy + Delta-G solvation = -26600.821797 eV Core-core repulsion = 22975.628625 eV Total energy + Delta-G solvation = -3625.193171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32511 -40.31871 -38.88615 -36.93466 -35.85565 -35.25856 -32.94097 -32.15826 -30.89411 -30.14395 -27.83395 -27.47561 -26.99959 -24.83722 -24.22682 -23.31448 -22.30708 -21.42708 -21.18037 -19.78897 -19.14741 -18.18699 -17.58151 -17.41153 -17.15170 -16.59448 -16.46111 -16.43033 -15.70222 -15.60645 -15.26680 -14.97758 -14.76034 -14.39986 -14.21705 -13.93636 -13.82288 -13.51636 -13.30824 -13.22049 -13.13072 -13.03806 -12.97313 -12.70194 -12.64088 -12.50109 -12.30463 -12.14883 -11.86824 -11.75476 -11.66871 -11.16160 -11.01078 -10.00583 -9.70523 -9.49840 -9.41523 -8.88101 -8.69314 -8.11167 -6.43889 0.93411 1.20523 1.40316 1.40656 1.50894 1.57583 2.05957 2.15035 2.20486 2.68974 2.78011 3.20341 3.50070 3.71234 3.79784 3.86773 3.99528 4.13308 4.18491 4.25168 4.28660 4.33065 4.36498 4.42069 4.53724 4.59183 4.62360 4.66712 4.80582 4.84015 4.86232 4.89647 4.90645 4.97497 5.13547 5.19256 5.24083 5.32448 5.43791 5.48834 5.70663 5.87191 6.01073 6.02933 6.18286 6.34247 6.41446 6.44069 6.56913 6.73023 6.81997 6.83155 7.08597 7.81114 8.28057 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.002156 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.789447 B =12986.842956 C =13480.474054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.038 3.962 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.483 4.483 8 H 0.083 0.917 9 C 0.070 3.930 10 C -0.079 4.079 11 N -0.456 5.456 12 C -0.108 4.108 13 C 0.186 3.814 14 N -0.745 5.745 15 C 0.133 3.867 16 C -0.107 4.107 17 C -0.084 4.084 18 H 0.068 0.932 19 C 0.063 3.937 20 N -0.705 5.705 21 C 0.131 3.869 22 C 0.014 3.986 23 C -0.217 4.217 24 C -0.225 4.225 25 C -0.025 4.025 26 N -0.444 5.444 27 C 0.109 3.891 28 C -0.234 4.234 29 H 0.290 0.710 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.398 0.602 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.363 0.637 40 H 0.052 0.948 41 H 0.109 0.891 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.179 0.821 45 H 0.113 0.887 46 H 0.094 0.906 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.409 -7.672 10.595 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.513 4.513 8 H 0.101 0.899 9 C 0.065 3.935 10 C -0.243 4.243 11 N -0.163 5.163 12 C -0.268 4.268 13 C 0.082 3.918 14 N -0.378 5.378 15 C 0.009 3.991 16 C -0.146 4.146 17 C -0.104 4.104 18 H 0.086 0.914 19 C -0.067 4.067 20 N -0.338 5.338 21 C 0.002 3.998 22 C -0.099 4.099 23 C -0.242 4.242 24 C -0.250 4.250 25 C -0.156 4.156 26 N -0.120 5.120 27 C -0.012 4.012 28 C -0.265 4.265 29 H 0.101 0.899 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.232 0.768 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.184 0.816 40 H 0.070 0.930 41 H 0.127 0.873 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.196 0.804 45 H 0.131 0.869 46 H 0.113 0.887 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.943 -8.318 10.670 20.909 hybrid contribution -0.482 1.886 -0.310 1.972 sum -16.425 -6.432 10.360 20.457 Atomic orbital electron populations 1.69866 1.09010 1.30742 1.34275 1.26796 0.95552 1.04528 0.90984 0.85161 0.79123 0.75619 0.79574 1.18659 1.18901 1.18285 1.19815 0.98295 0.91909 1.41249 0.89927 1.18618 0.91933 0.94037 0.88880 1.22453 1.04589 0.88350 1.08890 1.66813 1.07500 1.31935 1.10072 1.21624 1.00052 0.95673 1.09450 1.18663 0.87843 0.94427 0.90879 1.44414 1.28963 1.08439 1.55942 1.21300 0.94019 0.85571 0.98175 1.21605 0.95918 0.96632 1.00421 1.21041 0.97088 0.96520 0.95748 0.91350 1.21148 0.99989 0.88279 0.97275 1.58804 1.33254 1.17214 1.24546 1.20889 0.89599 1.02925 0.86414 1.20726 1.05911 0.87918 0.95315 1.20783 1.10611 0.99329 0.93449 1.21228 1.09428 0.95468 0.98873 1.22150 1.09074 0.98447 0.85894 1.44415 1.49003 1.10788 1.07769 1.22552 0.99086 0.83219 0.96309 1.21059 1.02580 0.95608 1.07287 0.89918 0.85453 0.84664 0.76775 0.93711 0.92938 0.89756 0.89638 0.90847 0.94706 0.81561 0.92993 0.87266 0.84341 0.84114 0.80409 0.86864 0.88740 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.63 10.93 21.82 0.24 -40.39 16 2 C 0.04 1.84 5.18 85.25 0.44 2.28 16 3 Si 0.98 36.57 29.59 68.60 2.03 38.60 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 6 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 7 C -0.48 -25.60 9.08 23.47 0.21 -25.39 16 8 H 0.08 4.19 7.90 -2.91 -0.02 4.17 16 9 C 0.07 3.86 5.59 -21.21 -0.12 3.74 16 10 C -0.08 -4.21 10.97 85.38 0.94 -3.27 16 11 N -0.46 -23.53 10.33 -193.04 -1.99 -25.52 16 12 C -0.11 -5.08 10.49 84.92 0.89 -4.19 16 13 C 0.19 8.45 6.66 38.25 0.25 8.70 16 14 N -0.74 -25.38 5.74 -339.22 -1.95 -27.32 16 15 C 0.13 3.48 4.68 86.38 0.40 3.88 16 16 C -0.11 -1.85 4.73 30.59 0.14 -1.71 16 17 C -0.08 -1.41 2.16 -11.26 -0.02 -1.44 16 18 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 19 C 0.06 1.06 5.07 86.03 0.44 1.50 16 20 N -0.70 -11.87 6.51 -523.10 -3.41 -15.28 16 21 C 0.13 2.01 6.53 85.85 0.56 2.57 16 22 C 0.01 0.29 6.22 41.42 0.26 0.55 16 23 C -0.22 -4.66 10.81 22.09 0.24 -4.42 16 24 C -0.23 -4.71 10.88 22.27 0.24 -4.47 16 25 C -0.03 -0.49 11.51 83.35 0.96 0.47 16 26 N -0.44 -8.51 2.78 -505.08 -1.40 -9.91 16 27 C 0.11 1.56 5.88 86.34 0.51 2.07 16 28 C -0.23 -12.10 8.67 23.04 0.20 -11.90 16 29 H 0.29 12.94 8.30 -92.71 -0.77 12.17 16 30 H 0.13 6.39 8.06 -2.91 -0.02 6.37 16 31 H 0.14 5.63 6.73 -2.91 -0.02 5.62 16 32 H 0.40 12.39 8.49 -92.71 -0.79 11.60 16 33 H 0.04 1.26 7.95 -2.39 -0.02 1.25 16 34 H 0.05 1.42 6.06 -2.38 -0.01 1.40 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.34 8.01 -2.39 -0.02 1.32 16 37 H 0.07 1.39 5.83 -2.39 -0.01 1.37 16 38 H 0.03 0.53 7.55 -2.39 -0.02 0.51 16 39 H 0.36 4.88 8.89 -89.69 -0.80 4.08 16 40 H 0.05 0.72 7.76 -2.39 -0.02 0.70 16 41 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 43 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 45 H 0.11 1.23 7.89 -2.39 -0.02 1.21 16 46 H 0.09 1.16 7.88 -2.39 -0.02 1.14 16 47 H 0.12 6.08 6.22 -2.91 -0.02 6.06 16 Total: -1.00 -65.88 374.39 -0.52 -66.40 By element: Atomic # 1 Polarization: 45.04 SS G_CDS: -0.59 Total: 44.45 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 6.55 Total: -31.02 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -8.51 Total: -118.43 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Total: -65.88 -0.52 -66.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163060685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.044 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds